Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99627 * 2 1 4 4 C 1.39675 * 110.99805 * 123.94657 * 2 1 3 5 5 C 1.38889 * 120.06243 * 299.72567 * 4 2 1 6 6 C 1.38304 * 119.89696 * 179.74222 * 5 4 2 7 7 F 1.35099 * 119.98424 * 180.28118 * 6 5 4 8 8 C 1.38537 * 120.02462 * 0.53666 * 6 5 4 9 9 C 1.38230 * 120.12657 * 359.71837 * 8 6 5 10 10 C 1.38138 * 120.09606 * 0.02582 * 9 8 6 11 11 C 1.50695 * 120.01494 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.46995 * 265.02065 * 11 10 9 13 13 H 1.07994 * 119.99561 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99981 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99970 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00037 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46928 * 90.00312 * 16 14 12 18 18 H 1.48498 * 109.47447 * 210.00189 * 16 14 12 19 19 H 1.48504 * 109.46915 * 330.00453 * 16 14 12 20 20 H 1.08998 * 109.47271 * 300.00349 * 1 2 3 21 21 H 1.08996 * 109.47517 * 60.00771 * 1 2 3 22 22 H 1.09006 * 109.46752 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47027 * 179.97438 * 3 2 1 24 24 H 1.09006 * 109.46834 * 299.99189 * 3 2 1 25 25 H 1.09000 * 109.47587 * 59.99818 * 3 2 1 26 26 H 1.07998 * 120.04721 * 0.02562 * 5 4 2 27 27 H 1.07999 * 119.94017 * 179.70181 * 8 6 5 28 28 H 1.07996 * 119.95610 * 179.97438 * 9 8 6 29 29 H 1.09002 * 109.46962 * 25.01728 * 11 10 9 30 30 H 1.08997 * 109.47713 * 145.01595 * 11 10 9 31 31 H 0.97001 * 120.00240 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9695 -0.7282 1.0817 5 6 1.6624 -0.3442 2.3807 6 6 2.1554 -1.0709 3.4492 7 9 1.8531 -0.7023 4.7133 8 6 2.9635 -2.1734 3.2238 9 6 3.2742 -2.5533 1.9315 10 6 2.7802 -1.8343 0.8604 11 6 3.1205 -2.2498 -0.5476 12 6 4.3113 -1.4620 -1.0298 13 1 4.7754 -0.7338 -0.3814 14 6 4.8088 -1.6719 -2.2985 15 7 4.2445 -2.5598 -3.0875 16 14 6.2844 -0.6949 -2.8965 17 1 7.5321 -1.4244 -2.5555 18 1 6.1993 -0.5210 -4.3688 19 1 6.2949 0.6373 -2.2404 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.0850 1.3424 0.0005 24 1 1.6459 1.8947 -0.8901 25 1 1.6458 1.8948 0.8899 26 1 1.0357 0.5177 2.5559 27 1 3.3517 -2.7369 4.0593 28 1 3.9047 -3.4129 1.7590 29 1 3.3573 -3.3136 -0.5653 30 1 2.2687 -2.0563 -1.1995 31 1 4.5942 -2.7072 -3.9802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260356617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = -33.456348 kcal Electronic energy + Delta-G solvation = -15166.707429 eV Core-core repulsion = 12554.850098 eV Total energy + Delta-G solvation = -2611.857331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.83426 -40.80567 -37.30768 -35.28770 -32.76620 -31.03214 -28.64593 -28.42760 -25.66680 -24.98919 -22.61163 -21.72874 -18.52596 -18.37866 -17.52964 -16.79055 -16.57395 -16.22531 -15.84374 -15.74431 -15.17913 -14.63243 -14.33875 -14.18427 -13.50027 -13.24718 -13.12513 -13.03436 -12.72866 -12.57346 -12.51437 -12.42433 -11.89537 -11.50333 -11.41310 -10.48430 -9.84308 -9.27925 -9.26511 -8.08578 -6.17096 0.26169 0.32467 1.43196 1.43537 1.54114 2.44758 2.70754 2.98608 3.23724 3.37509 3.86190 4.06819 4.23682 4.33531 4.40794 4.44284 4.62570 4.65788 4.81402 4.97043 5.02261 5.08917 5.19551 5.29871 5.43724 5.53447 5.82785 5.90122 6.03222 6.11252 6.30340 6.56702 6.92982 7.48015 9.01317 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.029210 B = 0.008913 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.340398 B = 3140.629405 C = 3524.910446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.520 5.520 3 C 0.040 3.960 4 C 0.106 3.894 5 C -0.181 4.181 6 C 0.075 3.925 7 F -0.146 7.146 8 C -0.146 4.146 9 C -0.099 4.099 10 C -0.055 4.055 11 C 0.072 3.928 12 C -0.499 4.499 13 H 0.047 0.953 14 C 0.006 3.994 15 N -0.931 5.931 16 Si 0.955 3.045 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.268 1.268 20 H 0.042 0.958 21 H 0.083 0.917 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.142 0.858 27 H 0.158 0.842 28 H 0.138 0.862 29 H -0.002 1.002 30 H 0.017 0.983 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 5.017 9.872 12.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.240 5.240 3 C -0.107 4.107 4 C 0.012 3.988 5 C -0.202 4.202 6 C 0.055 3.945 7 F -0.125 7.125 8 C -0.164 4.164 9 C -0.117 4.117 10 C -0.056 4.056 11 C 0.035 3.965 12 C -0.537 4.537 13 H 0.065 0.935 14 C -0.191 4.191 15 N -0.572 5.572 16 Si 0.781 3.219 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.192 1.192 20 H 0.061 0.939 21 H 0.102 0.898 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.100 0.900 25 H 0.060 0.940 26 H 0.160 0.840 27 H 0.176 0.824 28 H 0.156 0.844 29 H 0.016 0.984 30 H 0.035 0.965 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.215 4.763 9.292 11.671 hybrid contribution 0.441 0.686 0.213 0.842 sum -4.774 5.448 9.504 11.950 Atomic orbital electron populations 1.22454 0.84989 1.02196 1.01781 1.59392 1.09039 1.14783 1.40835 1.22337 1.00184 0.86706 1.01425 1.18479 0.97226 0.94847 0.88240 1.21611 1.04350 1.02209 0.92065 1.17497 1.01223 0.97272 0.78499 1.91448 1.92069 1.91378 1.37585 1.21280 0.99723 0.97099 0.98340 1.21037 0.99350 1.00345 0.90982 1.20584 0.93803 0.93721 0.97510 1.17881 0.95992 0.94420 0.88166 1.21140 1.12848 1.20944 0.98787 0.93471 1.25746 0.99888 0.96468 0.97000 1.70075 1.42619 1.35682 1.08825 0.85599 0.79722 0.79306 0.77309 1.20096 1.20983 1.19216 0.93949 0.89824 0.92225 0.93124 0.89974 0.93992 0.84050 0.82440 0.84447 0.98395 0.96504 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.29 127.69 1.19 2.12 16 2 N -0.52 -19.15 4.03 -745.10 -3.00 -22.15 16 3 C 0.04 1.28 9.33 127.69 1.19 2.47 16 4 C 0.11 4.04 4.69 38.21 0.18 4.22 16 5 C -0.18 -5.88 8.63 22.44 0.19 -5.68 16 6 C 0.07 2.36 7.30 22.36 0.16 2.52 16 7 F -0.15 -4.33 17.27 44.97 0.78 -3.56 16 8 C -0.15 -4.48 10.02 22.34 0.22 -4.26 16 9 C -0.10 -3.60 9.67 22.24 0.22 -3.38 16 10 C -0.06 -2.36 5.09 -19.73 -0.10 -2.46 16 11 C 0.07 3.78 4.80 29.10 0.14 3.92 16 12 C -0.50 -27.81 9.09 25.60 0.23 -27.57 16 13 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 14 C 0.01 0.36 5.46 84.65 0.46 0.82 16 15 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 16 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H 0.04 1.03 7.28 -2.39 -0.02 1.01 16 21 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 22 H 0.06 1.79 8.12 -2.38 -0.02 1.77 16 23 H 0.05 1.85 8.12 -2.39 -0.02 1.84 16 24 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 25 H 0.04 1.12 7.46 -2.39 -0.02 1.10 16 26 H 0.14 3.93 7.08 -2.91 -0.02 3.91 16 27 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 28 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 29 H 0.00 -0.12 8.05 -2.39 -0.02 -0.14 16 30 H 0.02 0.95 7.62 -2.39 -0.02 0.93 16 31 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -62.71 270.98 5.28 -57.42 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.11 Total: 4.85 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 4.09 Total: -27.29 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.71 Total: -77.67 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -62.71 5.28 -57.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.965 kcal (2) G-P(sol) polarization free energy of solvation -62.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds