Wall clock time and date at job start Mon Mar 30 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08998 * 110.83047 * 297.44846 * 9 7 2 11 11 C 1.54851 * 110.94329 * 173.68073 * 9 7 2 12 12 O 1.44271 * 101.19339 * 218.60322 * 11 9 7 13 13 C 1.34596 * 107.66695 * 24.64448 * 12 11 9 14 14 C 1.50702 * 122.93492 * 162.80235 * 13 12 11 15 15 C 1.53001 * 109.46965 * 204.99726 * 14 13 12 16 16 C 1.53000 * 109.47079 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.47470 * 60.00252 * 16 15 14 18 18 C 1.53001 * 109.46763 * 299.99941 * 17 16 15 19 19 C 1.52997 * 109.47014 * 85.00094 * 14 13 12 20 20 N 1.28633 * 114.12669 * 342.79867 * 13 12 11 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.08996 * 111.07957 * 336.58826 * 11 9 7 23 23 H 1.09002 * 111.07348 * 100.62639 * 11 9 7 24 24 H 1.08996 * 109.47352 * 324.99689 * 14 13 12 25 25 H 1.08996 * 109.47056 * 300.00145 * 15 14 13 26 26 H 1.09005 * 109.46961 * 60.00076 * 15 14 13 27 27 H 1.08996 * 109.47144 * 299.99906 * 16 15 14 28 28 H 1.08999 * 109.46994 * 180.02562 * 16 15 14 29 29 H 1.08996 * 109.47901 * 180.02562 * 17 16 15 30 30 H 1.08996 * 109.47220 * 59.99700 * 17 16 15 31 31 H 1.09001 * 109.47383 * 299.99572 * 18 17 16 32 32 H 1.09005 * 109.46961 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47390 * 299.98966 * 19 14 13 34 34 H 1.09002 * 109.47732 * 59.99865 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6466 -2.6019 0.8959 11 6 2.2196 -3.6970 -0.1628 12 8 1.4574 -4.5614 -1.0308 13 6 0.5969 -3.7907 -1.7216 14 6 -0.0949 -4.2571 -2.9765 15 6 -0.4745 -3.0453 -3.8300 16 6 -1.1774 -3.5188 -5.1038 17 6 -2.4416 -4.2954 -4.7302 18 6 -2.0620 -5.5072 -3.8767 19 6 -1.3590 -5.0340 -2.6033 20 7 0.4166 -2.6213 -1.2169 21 1 -0.4850 0.8401 -0.0004 22 1 3.1512 -3.3881 -0.6368 23 1 2.4105 -4.1756 0.7977 24 1 0.5756 -4.9041 -3.5420 25 1 -1.1450 -2.3983 -3.2645 26 1 0.4261 -2.4918 -4.0959 27 1 -0.5073 -4.1660 -5.6695 28 1 -1.4474 -2.6555 -5.7121 29 1 -2.9422 -4.6331 -5.6376 30 1 -3.1117 -3.6482 -4.1646 31 1 -1.3918 -6.1545 -4.4424 32 1 -2.9627 -6.0602 -3.6101 33 1 -1.0887 -5.8974 -1.9954 34 1 -2.0296 -4.3870 -2.0378 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260377069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:36 Heat of formation + Delta-G solvation = -38.493174 kcal Electronic energy + Delta-G solvation = -15654.785360 eV Core-core repulsion = 13166.169921 eV Total energy + Delta-G solvation = -2488.615439 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.98333 -37.89793 -33.32908 -32.16379 -30.92912 -30.42270 -28.18441 -24.95592 -22.91007 -22.29402 -20.88909 -19.84348 -18.59574 -16.60617 -15.92603 -15.27625 -14.59672 -14.39086 -14.06259 -13.86832 -13.74320 -12.98966 -12.26071 -12.17301 -11.90853 -11.80943 -11.71747 -11.00415 -10.90551 -10.80304 -10.67620 -10.57894 -10.21896 -9.96770 -9.91502 -9.75204 -9.48629 -8.68640 -8.48883 -7.71177 -5.99526 -4.12746 3.29537 3.35979 3.37275 3.46173 4.22332 4.42182 4.97969 5.04170 5.08439 5.25555 5.49072 5.54963 5.65612 5.74938 5.79149 5.83724 5.88671 6.01743 6.11196 6.14327 6.22926 6.31264 6.35527 6.42361 6.51740 6.55670 6.71422 6.90569 7.01154 7.31508 7.65619 7.85143 8.21063 8.77993 9.21707 9.55018 11.07405 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033198 B = 0.008137 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.233643 B = 3440.052170 C = 3957.335940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.081 3.919 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.158 3.842 10 H 0.055 0.945 11 C 0.022 3.978 12 O -0.373 6.373 13 C 0.219 3.781 14 C 0.003 3.997 15 C -0.103 4.103 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.109 4.109 20 N -0.453 5.453 21 H 0.259 0.741 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 -8.446 -7.577 11.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.079 0.921 9 C 0.051 3.949 10 H 0.072 0.928 11 C -0.055 4.055 12 O -0.279 6.279 13 C -0.010 4.010 14 C -0.016 4.016 15 C -0.140 4.140 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.153 4.153 19 C -0.148 4.148 20 N -0.183 5.183 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.330 -7.718 -7.602 11.333 hybrid contribution 1.114 0.511 0.457 1.308 sum -2.216 -7.207 -7.145 10.388 Atomic orbital electron populations 1.70065 1.05858 1.26281 1.46487 1.24977 0.94765 0.98964 0.93854 0.86627 0.79894 0.83434 0.78187 1.20566 1.21076 1.19832 1.20742 0.92197 0.89267 1.54824 0.92093 1.21195 0.89342 0.93204 0.91125 0.92777 1.24664 0.96135 0.92004 0.92721 1.86759 1.50173 1.36845 1.54132 1.25400 0.92512 0.88253 0.94854 1.19590 0.95179 0.97292 0.89566 1.21419 1.01337 0.96476 0.94799 1.21559 0.96782 0.99566 0.97645 1.21555 0.97807 0.97214 0.99216 1.21514 0.99913 0.97471 0.96396 1.21533 0.96129 0.99756 0.97361 1.75029 1.20684 1.13386 1.09202 0.93070 0.91463 0.89758 0.90345 0.89966 0.91777 0.92409 0.92046 0.92545 0.91781 0.92156 0.92159 0.91864 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.33 12.89 55.43 0.71 -24.61 16 2 C 0.08 2.32 5.41 -17.82 -0.10 2.22 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.06 8.79 -34.44 -0.30 -15.37 16 8 H 0.06 1.67 7.66 -52.49 -0.40 1.27 16 9 C 0.16 4.23 3.61 -67.50 -0.24 3.98 16 10 H 0.05 1.55 8.14 -51.93 -0.42 1.12 16 11 C 0.02 0.49 7.72 38.13 0.29 0.78 16 12 O -0.37 -8.35 11.17 -15.56 -0.17 -8.52 16 13 C 0.22 4.90 6.81 -13.62 -0.09 4.80 16 14 C 0.00 0.06 2.66 -91.77 -0.24 -0.19 16 15 C -0.10 -1.74 4.77 -26.73 -0.13 -1.87 16 16 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 17 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 18 C -0.12 -1.38 5.92 -26.75 -0.16 -1.54 16 19 C -0.11 -1.66 5.18 -26.75 -0.14 -1.79 16 20 N -0.45 -11.80 10.00 -51.72 -0.52 -12.31 16 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.07 1.48 7.81 -51.93 -0.41 1.08 16 23 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 24 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.08 1.61 7.91 -51.93 -0.41 1.20 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 277.04 15.07 4.17 4.17 Total: -1.00 -30.83 277.04 -7.68 -38.51 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.43 Total: -1.48 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.43 Total: -12.24 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.20 Total: -36.93 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.17 Total: -8.52 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.83 -7.68 -38.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260377069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.017 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds