Wall clock time and date at job start Mon Mar 30 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08998 * 110.83047 * 297.44846 * 9 7 2 11 11 C 1.54851 * 110.94329 * 173.68073 * 9 7 2 12 12 O 1.44271 * 101.19339 * 218.60322 * 11 9 7 13 13 C 1.34596 * 107.66695 * 24.64448 * 12 11 9 14 14 C 1.50702 * 122.93492 * 162.80235 * 13 12 11 15 15 C 1.53001 * 109.46965 * 204.99726 * 14 13 12 16 16 C 1.53000 * 109.47079 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.47470 * 60.00252 * 16 15 14 18 18 C 1.53001 * 109.46763 * 299.99941 * 17 16 15 19 19 C 1.52997 * 109.47014 * 85.00094 * 14 13 12 20 20 N 1.28633 * 114.12669 * 342.79867 * 13 12 11 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.08996 * 111.07957 * 336.58826 * 11 9 7 23 23 H 1.09002 * 111.07348 * 100.62639 * 11 9 7 24 24 H 1.08996 * 109.47352 * 324.99689 * 14 13 12 25 25 H 1.08996 * 109.47056 * 300.00145 * 15 14 13 26 26 H 1.09005 * 109.46961 * 60.00076 * 15 14 13 27 27 H 1.08996 * 109.47144 * 299.99906 * 16 15 14 28 28 H 1.08999 * 109.46994 * 180.02562 * 16 15 14 29 29 H 1.08996 * 109.47901 * 180.02562 * 17 16 15 30 30 H 1.08996 * 109.47220 * 59.99700 * 17 16 15 31 31 H 1.09001 * 109.47383 * 299.99572 * 18 17 16 32 32 H 1.09005 * 109.46961 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47390 * 299.98966 * 19 14 13 34 34 H 1.09002 * 109.47732 * 59.99865 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6466 -2.6019 0.8959 11 6 2.2196 -3.6970 -0.1628 12 8 1.4574 -4.5614 -1.0308 13 6 0.5969 -3.7907 -1.7216 14 6 -0.0949 -4.2571 -2.9765 15 6 -0.4745 -3.0453 -3.8300 16 6 -1.1774 -3.5188 -5.1038 17 6 -2.4416 -4.2954 -4.7302 18 6 -2.0620 -5.5072 -3.8767 19 6 -1.3590 -5.0340 -2.6033 20 7 0.4166 -2.6213 -1.2169 21 1 -0.4850 0.8401 -0.0004 22 1 3.1512 -3.3881 -0.6368 23 1 2.4105 -4.1756 0.7977 24 1 0.5756 -4.9041 -3.5420 25 1 -1.1450 -2.3983 -3.2645 26 1 0.4261 -2.4918 -4.0959 27 1 -0.5073 -4.1660 -5.6695 28 1 -1.4474 -2.6555 -5.7121 29 1 -2.9422 -4.6331 -5.6376 30 1 -3.1117 -3.6482 -4.1646 31 1 -1.3918 -6.1545 -4.4424 32 1 -2.9627 -6.0602 -3.6101 33 1 -1.0887 -5.8974 -1.9954 34 1 -2.0296 -4.3870 -2.0378 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260377069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:36 Heat of formation + Delta-G solvation = -60.127975 kcal Electronic energy + Delta-G solvation = -15655.723515 eV Core-core repulsion = 13166.169921 eV Total energy + Delta-G solvation = -2489.553594 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.79304 -39.14822 -35.39111 -33.85976 -32.63537 -31.59730 -29.92017 -27.01707 -24.28686 -23.54445 -22.79721 -21.12072 -20.13268 -18.71503 -17.67038 -16.97414 -16.40550 -16.05529 -15.64290 -14.98823 -14.95310 -14.49254 -14.23544 -13.88377 -13.40146 -13.26080 -13.04095 -12.80229 -12.53180 -12.46170 -12.20063 -11.96509 -11.91409 -11.50475 -11.34194 -11.10984 -10.95286 -10.70990 -10.51279 -9.66251 -8.15222 -6.36293 1.37392 1.39004 1.49091 1.64472 2.37093 2.55721 3.10168 3.63638 3.87748 3.90346 4.12044 4.21311 4.28317 4.36086 4.41240 4.50507 4.62450 4.66138 4.69126 4.75048 4.90332 5.10166 5.18983 5.24625 5.29690 5.33694 5.37929 5.38864 5.48530 5.63227 5.65899 5.81054 6.11966 6.63778 7.30713 7.38908 8.92276 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033198 B = 0.008137 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.233643 B = 3440.052170 C = 3957.335940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.028 3.972 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.147 3.853 10 H 0.019 0.981 11 C 0.030 3.970 12 O -0.370 6.370 13 C 0.232 3.768 14 C 0.002 3.998 15 C -0.097 4.097 16 C -0.110 4.110 17 C -0.120 4.120 18 C -0.108 4.108 19 C -0.105 4.105 20 N -0.504 5.504 21 H 0.260 0.740 22 H 0.074 0.926 23 H 0.112 0.888 24 H 0.105 0.895 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 -9.624 -9.249 13.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.176 4.176 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.589 4.589 8 H 0.082 0.918 9 C 0.039 3.961 10 H 0.037 0.963 11 C -0.047 4.047 12 O -0.276 6.276 13 C 0.003 3.997 14 C -0.018 4.018 15 C -0.135 4.135 16 C -0.148 4.148 17 C -0.157 4.157 18 C -0.145 4.145 19 C -0.144 4.144 20 N -0.235 5.235 21 H 0.068 0.932 22 H 0.092 0.908 23 H 0.130 0.870 24 H 0.123 0.877 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.873 -8.912 -9.271 13.177 hybrid contribution 0.971 0.804 0.995 1.606 sum -1.901 -8.108 -8.276 11.741 Atomic orbital electron populations 1.70221 1.07559 1.27095 1.47598 1.25861 0.95621 1.02740 0.93358 0.85510 0.78881 0.78697 0.78217 1.20349 1.20497 1.18519 1.21113 0.92569 0.90509 1.54701 0.91751 1.21100 0.89954 0.94571 0.90460 0.96344 1.24626 0.95220 0.90680 0.94169 1.86760 1.50062 1.36756 1.54042 1.26382 0.90870 0.87237 0.95189 1.19912 0.96333 0.98007 0.87506 1.21339 1.00044 0.95734 0.96407 1.21530 0.97361 1.00469 0.95401 1.21573 0.97026 0.96814 1.00308 1.21502 1.00706 0.97752 0.94532 1.21510 0.94681 0.98915 0.99247 1.74993 1.22719 1.15762 1.10046 0.93156 0.90791 0.86993 0.87686 0.93659 0.93796 0.90183 0.91335 0.89573 0.93259 0.90053 0.90318 0.91486 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.71 12.89 21.45 0.28 -54.43 16 2 C 0.03 1.60 5.41 84.66 0.46 2.06 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -31.89 8.79 25.60 0.23 -31.66 16 8 H 0.06 3.56 7.66 -2.91 -0.02 3.54 16 9 C 0.15 8.09 3.61 44.67 0.16 8.25 16 10 H 0.02 1.13 8.14 -2.39 -0.02 1.12 16 11 C 0.03 1.33 7.72 72.61 0.56 1.89 16 12 O -0.37 -16.32 11.17 -78.61 -0.88 -17.20 16 13 C 0.23 10.44 6.81 88.58 0.60 11.04 16 14 C 0.00 0.06 2.66 -11.54 -0.03 0.03 16 15 C -0.10 -3.30 4.77 30.59 0.15 -3.16 16 16 C -0.11 -2.61 5.92 30.59 0.18 -2.42 16 17 C -0.12 -2.50 5.92 30.59 0.18 -2.31 16 18 C -0.11 -2.20 5.92 30.58 0.18 -2.02 16 19 C -0.10 -3.04 5.18 30.58 0.16 -2.88 16 20 N -0.50 -27.24 10.00 -432.77 -4.33 -31.56 16 21 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 22 H 0.07 3.21 7.81 -2.39 -0.02 3.19 16 23 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 24 H 0.11 3.03 8.14 -2.39 -0.02 3.02 16 25 H 0.04 1.85 7.91 -2.39 -0.02 1.83 16 26 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -68.79 277.04 0.98 -67.81 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.06 Total: 9.75 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 2.83 Total: -21.19 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -4.05 Total: -86.00 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.88 Total: -17.20 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -68.79 0.98 -67.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260377069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.686 kcal (2) G-P(sol) polarization free energy of solvation -68.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds