Wall clock time and date at job start Mon Mar 30 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48494 * 109.47459 * 264.61193 * 3 2 1 5 5 H 1.48498 * 109.47084 * 24.61472 * 3 2 1 6 6 H 1.48506 * 109.47053 * 144.61190 * 3 2 1 7 7 C 1.37875 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00097 * 4.78059 * 7 2 1 9 9 C 1.50708 * 120.00037 * 184.77272 * 7 2 1 10 10 H 1.08995 * 109.47064 * 4.89555 * 9 7 2 11 11 C 1.52996 * 109.46920 * 244.89540 * 9 7 2 12 12 C 1.53006 * 117.49840 * 123.42870 * 11 9 7 13 13 C 1.53001 * 117.50215 * 54.80670 * 11 9 7 14 14 C 1.53001 * 109.46878 * 124.89656 * 9 7 2 15 15 H 1.08993 * 109.40230 * 60.17325 * 14 9 7 16 16 C 1.53069 * 109.39941 * 300.42693 * 14 9 7 17 17 C 1.53332 * 108.42437 * 190.96581 * 16 14 9 18 18 C 1.52919 * 108.68390 * 67.52313 * 17 16 14 19 19 N 1.45751 * 110.48922 * 309.25954 * 18 17 16 20 20 C 1.33355 * 124.10536 * 19.07323 * 19 18 17 21 21 O 1.21281 * 118.24980 * 177.78182 * 20 19 18 22 22 H 0.97003 * 120.00155 * 0.02562 * 1 2 3 23 23 H 1.08997 * 115.55420 * 269.13104 * 11 9 7 24 24 H 1.09000 * 117.49837 * 359.97438 * 12 11 9 25 25 H 1.09000 * 117.50347 * 145.01886 * 12 11 9 26 26 H 1.08998 * 117.50046 * 214.97992 * 13 11 9 27 27 H 1.08996 * 117.49784 * 359.97438 * 13 11 9 28 28 H 1.08996 * 109.67755 * 310.70694 * 16 14 9 29 29 H 1.09003 * 109.67254 * 71.23962 * 16 14 9 30 30 H 1.09000 * 109.59176 * 307.77048 * 17 16 14 31 31 H 1.09001 * 109.60945 * 187.28415 * 17 16 14 32 32 H 1.08999 * 109.30249 * 188.94668 * 18 17 16 33 33 H 1.09001 * 109.30423 * 69.57079 * 18 17 16 34 34 H 0.97007 * 117.95103 * 199.09659 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6104 1.9808 -1.3938 5 1 1.3942 2.6829 0.5831 6 1 3.4851 1.4758 0.8108 7 6 2.0045 -1.1940 0.0005 8 1 1.4674 -2.1277 -0.0770 9 6 3.5077 -1.1962 0.1091 10 1 3.8621 -0.1773 0.2648 11 6 4.1113 -1.7546 -1.1810 12 6 5.1098 -0.8726 -1.9334 13 6 3.7041 -1.0895 -2.4973 14 6 3.9323 -2.0702 1.2910 15 1 3.5799 -3.0893 1.1326 16 6 3.3187 -1.5162 2.5793 17 6 3.9694 -2.2284 3.7711 18 6 5.4379 -1.8094 3.8501 19 7 6.0859 -1.9745 2.5550 20 6 5.4302 -2.0712 1.3977 21 8 6.0783 -2.1654 0.3769 22 1 -0.4850 0.8401 -0.0004 23 1 4.2818 -2.8311 -1.1928 24 1 5.3363 0.1057 -1.5095 25 1 5.9375 -1.3687 -2.4403 26 1 3.6070 -1.7283 -3.3751 27 1 3.0058 -0.2543 -2.4442 28 1 3.5073 -0.4447 2.6444 29 1 2.2445 -1.7012 2.5832 30 1 3.9039 -3.3075 3.6322 31 1 3.4581 -1.9440 4.6908 32 1 5.9491 -2.4255 4.5898 33 1 5.4986 -0.7640 4.1525 34 1 7.0547 -2.0172 2.5334 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260389625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:33 Heat of formation + Delta-G solvation = -23.294521 kcal Electronic energy + Delta-G solvation = -16202.072895 eV Core-core repulsion = 13714.116519 eV Total energy + Delta-G solvation = -2487.956376 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.90124 -36.62318 -35.90932 -33.31284 -32.06121 -30.06176 -27.12032 -24.45824 -22.03680 -21.91500 -21.22382 -18.96791 -18.58086 -17.02518 -16.77923 -15.32664 -14.97810 -14.39495 -14.11209 -13.78752 -13.51356 -13.00434 -12.91587 -12.65392 -12.19944 -11.45782 -11.20287 -10.99697 -10.80467 -10.51886 -10.40325 -10.31465 -10.06053 -9.59641 -9.36047 -9.11116 -8.96232 -8.66616 -8.54885 -8.17345 -6.08457 -4.05223 3.26033 3.31405 3.34918 3.37708 3.75040 4.40229 5.02203 5.07307 5.10027 5.19881 5.36081 5.43323 5.66342 5.75151 5.95891 6.02774 6.11741 6.18586 6.24069 6.28124 6.58138 6.65461 6.77599 6.80928 6.95405 7.01595 7.18597 7.23680 7.25194 7.50901 7.73336 7.83757 8.52188 8.83098 8.98028 9.55212 11.04750 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.013470 C = 0.010326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.736302 B = 2078.214109 C = 2710.951353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.077 3.923 3 Si 0.864 3.136 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.492 4.492 8 H 0.076 0.924 9 C 0.049 3.951 10 H 0.042 0.958 11 C -0.094 4.094 12 C -0.183 4.183 13 C -0.184 4.184 14 C -0.084 4.084 15 H 0.092 0.908 16 C -0.107 4.107 17 C -0.139 4.139 18 C 0.114 3.886 19 N -0.732 5.732 20 C 0.514 3.486 21 O -0.544 6.544 22 H 0.263 0.737 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.787 -2.472 7.263 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.125 4.125 3 Si 0.693 3.307 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.530 4.530 8 H 0.094 0.906 9 C 0.029 3.971 10 H 0.060 0.940 11 C -0.112 4.112 12 C -0.220 4.220 13 C -0.221 4.221 14 C -0.106 4.106 15 H 0.110 0.890 16 C -0.144 4.144 17 C -0.177 4.177 18 C -0.011 4.011 19 N -0.386 5.386 20 C 0.302 3.698 21 O -0.420 6.420 22 H 0.073 0.927 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.679 -2.385 6.722 11.234 hybrid contribution 0.831 0.975 0.094 1.285 sum 9.511 -1.410 6.817 11.786 Atomic orbital electron populations 1.69883 1.06098 1.26795 1.50963 1.24983 0.94533 0.98348 0.94611 0.87100 0.80050 0.84417 0.79153 1.19896 1.21714 1.19102 1.20803 0.88317 0.94539 1.49307 0.90622 1.18890 0.96357 0.94188 0.87620 0.94004 1.22223 0.98834 0.96771 0.93408 1.22747 0.92391 1.00911 1.05941 1.22855 0.97246 1.04132 0.97829 1.21402 0.87801 1.02762 0.98615 0.88984 1.21583 1.01957 0.99354 0.91550 1.21952 0.94090 1.01273 1.00400 1.21295 0.94564 1.00590 0.84620 1.45634 1.09978 1.75973 1.06968 1.20926 0.92188 0.74423 0.82275 1.90704 1.68328 1.49385 1.33630 0.92695 0.89861 0.91011 0.90692 0.90693 0.89210 0.92181 0.89083 0.91403 0.90495 0.91607 0.92469 0.77817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.96 55.43 0.77 -25.60 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.86 21.30 26.77 -169.99 -4.55 16.75 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.35 6.21 56.52 0.35 -6.00 16 7 C -0.49 -12.98 7.21 -34.44 -0.25 -13.22 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 9 C 0.05 1.14 1.45 -91.77 -0.13 1.00 16 10 H 0.04 1.04 4.21 -51.93 -0.22 0.82 16 11 C -0.09 -2.12 3.38 -90.62 -0.31 -2.43 16 12 C -0.18 -3.91 9.10 -26.73 -0.24 -4.16 16 13 C -0.18 -4.04 9.77 -26.73 -0.26 -4.30 16 14 C -0.08 -1.68 2.00 -91.99 -0.18 -1.86 16 15 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 16 C -0.11 -1.90 4.84 -26.52 -0.13 -2.03 16 17 C -0.14 -1.81 6.02 -26.60 -0.16 -1.97 16 18 C 0.11 1.35 7.17 -4.49 -0.03 1.31 16 19 N -0.73 -10.80 5.45 -61.39 -0.33 -11.14 16 20 C 0.51 9.73 7.29 -11.87 -0.09 9.64 16 21 O -0.54 -11.77 14.18 5.56 0.08 -11.69 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.08 1.87 7.89 -51.93 -0.41 1.46 16 24 H 0.07 1.57 8.03 -51.93 -0.42 1.15 16 25 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.09 2.15 7.38 -51.93 -0.38 1.76 16 28 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 29 H 0.09 1.76 7.64 -51.93 -0.40 1.36 16 30 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.39 5.04 8.80 -40.82 -0.36 4.68 16 LS Contribution 269.87 15.07 4.07 4.07 Total: -1.00 -30.18 269.87 -7.02 -37.20 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.17 Total: 6.41 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.88 Total: -16.00 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.44 Total: -36.74 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.55 Total: 16.75 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.18 -7.02 -37.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.905 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds