Wall clock time and date at job start Mon Mar 30 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48494 * 109.47459 * 264.61193 * 3 2 1 5 5 H 1.48498 * 109.47084 * 24.61472 * 3 2 1 6 6 H 1.48506 * 109.47053 * 144.61190 * 3 2 1 7 7 C 1.37875 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00097 * 4.78059 * 7 2 1 9 9 C 1.50708 * 120.00037 * 184.77272 * 7 2 1 10 10 H 1.08995 * 109.47064 * 4.89555 * 9 7 2 11 11 C 1.52996 * 109.46920 * 244.89540 * 9 7 2 12 12 C 1.53006 * 117.49840 * 123.42870 * 11 9 7 13 13 C 1.53001 * 117.50215 * 54.80670 * 11 9 7 14 14 C 1.53001 * 109.46878 * 124.89656 * 9 7 2 15 15 H 1.08993 * 109.40230 * 60.17325 * 14 9 7 16 16 C 1.53069 * 109.39941 * 300.42693 * 14 9 7 17 17 C 1.53332 * 108.42437 * 190.96581 * 16 14 9 18 18 C 1.52919 * 108.68390 * 67.52313 * 17 16 14 19 19 N 1.45751 * 110.48922 * 309.25954 * 18 17 16 20 20 C 1.33355 * 124.10536 * 19.07323 * 19 18 17 21 21 O 1.21281 * 118.24980 * 177.78182 * 20 19 18 22 22 H 0.97003 * 120.00155 * 0.02562 * 1 2 3 23 23 H 1.08997 * 115.55420 * 269.13104 * 11 9 7 24 24 H 1.09000 * 117.49837 * 359.97438 * 12 11 9 25 25 H 1.09000 * 117.50347 * 145.01886 * 12 11 9 26 26 H 1.08998 * 117.50046 * 214.97992 * 13 11 9 27 27 H 1.08996 * 117.49784 * 359.97438 * 13 11 9 28 28 H 1.08996 * 109.67755 * 310.70694 * 16 14 9 29 29 H 1.09003 * 109.67254 * 71.23962 * 16 14 9 30 30 H 1.09000 * 109.59176 * 307.77048 * 17 16 14 31 31 H 1.09001 * 109.60945 * 187.28415 * 17 16 14 32 32 H 1.08999 * 109.30249 * 188.94668 * 18 17 16 33 33 H 1.09001 * 109.30423 * 69.57079 * 18 17 16 34 34 H 0.97007 * 117.95103 * 199.09659 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6104 1.9808 -1.3938 5 1 1.3942 2.6829 0.5831 6 1 3.4851 1.4758 0.8108 7 6 2.0045 -1.1940 0.0005 8 1 1.4674 -2.1277 -0.0770 9 6 3.5077 -1.1962 0.1091 10 1 3.8621 -0.1773 0.2648 11 6 4.1113 -1.7546 -1.1810 12 6 5.1098 -0.8726 -1.9334 13 6 3.7041 -1.0895 -2.4973 14 6 3.9323 -2.0702 1.2910 15 1 3.5799 -3.0893 1.1326 16 6 3.3187 -1.5162 2.5793 17 6 3.9694 -2.2284 3.7711 18 6 5.4379 -1.8094 3.8501 19 7 6.0859 -1.9745 2.5550 20 6 5.4302 -2.0712 1.3977 21 8 6.0783 -2.1654 0.3769 22 1 -0.4850 0.8401 -0.0004 23 1 4.2818 -2.8311 -1.1928 24 1 5.3363 0.1057 -1.5095 25 1 5.9375 -1.3687 -2.4403 26 1 3.6070 -1.7283 -3.3751 27 1 3.0058 -0.2543 -2.4442 28 1 3.5073 -0.4447 2.6444 29 1 2.2445 -1.7012 2.5832 30 1 3.9039 -3.3075 3.6322 31 1 3.4581 -1.9440 4.6908 32 1 5.9491 -2.4255 4.5898 33 1 5.4986 -0.7640 4.1525 34 1 7.0547 -2.0172 2.5334 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:33 Heat of formation + Delta-G solvation = -43.309075 kcal Electronic energy + Delta-G solvation = -16202.940791 eV Core-core repulsion = 13714.116519 eV Total energy + Delta-G solvation = -2488.824272 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.34783 -38.34886 -37.26619 -35.04019 -33.90922 -31.51121 -28.77286 -26.10880 -23.59877 -23.32380 -22.96040 -20.80657 -20.00199 -18.98840 -18.06423 -16.81591 -16.49572 -16.23348 -15.60683 -15.48701 -14.93901 -14.71626 -14.37032 -14.16206 -13.87373 -13.21888 -12.91124 -12.60820 -12.26497 -12.19913 -12.02356 -11.87286 -11.76108 -11.62547 -11.11578 -10.86012 -10.74520 -10.52533 -9.95188 -9.85454 -8.24503 -6.23108 1.28171 1.33316 1.38606 1.83408 2.33379 2.53062 3.11067 3.32434 3.84744 3.91455 4.02540 4.14808 4.20662 4.38365 4.42506 4.56427 4.66816 4.81514 4.83489 4.89091 4.98543 5.04437 5.15535 5.24471 5.34880 5.41454 5.42194 5.54505 5.66365 5.72960 6.08562 6.36884 6.48876 6.79976 7.39595 7.45138 8.92362 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.013470 C = 0.010326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.736302 B = 2078.214109 C = 2710.951353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.032 3.968 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.478 4.478 8 H 0.040 0.960 9 C 0.050 3.950 10 H 0.030 0.970 11 C -0.107 4.107 12 C -0.164 4.164 13 C -0.188 4.188 14 C -0.087 4.087 15 H 0.087 0.913 16 C -0.106 4.106 17 C -0.132 4.132 18 C 0.109 3.891 19 N -0.718 5.718 20 C 0.514 3.486 21 O -0.576 6.576 22 H 0.264 0.736 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 -2.403 8.798 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.166 4.166 3 Si 0.740 3.260 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.031 3.969 10 H 0.048 0.952 11 C -0.126 4.126 12 C -0.201 4.201 13 C -0.225 4.225 14 C -0.108 4.108 15 H 0.105 0.895 16 C -0.143 4.143 17 C -0.170 4.170 18 C -0.014 4.014 19 N -0.370 5.370 20 C 0.301 3.699 21 O -0.456 6.456 22 H 0.073 0.927 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 10.919 -2.319 8.305 13.913 hybrid contribution 0.124 0.868 -0.359 0.947 sum 11.043 -1.451 7.946 13.682 Atomic orbital electron populations 1.70000 1.07633 1.27531 1.53272 1.25555 0.94990 1.01239 0.94788 0.86298 0.79469 0.81057 0.79225 1.19929 1.21288 1.17705 1.20863 0.90080 0.92912 1.47737 0.94188 1.18795 0.93979 0.94433 0.89687 0.95172 1.22195 1.00169 0.96967 0.93277 1.22720 0.92344 1.00303 1.04762 1.22866 0.97472 1.03728 0.98456 1.21245 0.89582 1.01758 0.98220 0.89536 1.21509 1.00770 0.99133 0.92925 1.21931 0.94941 1.01020 0.99065 1.21595 0.93668 1.02418 0.83735 1.45502 1.10724 1.73952 1.06849 1.20541 0.91364 0.74769 0.83183 1.90682 1.68576 1.51239 1.35108 0.92710 0.89916 0.91459 0.88861 0.88622 0.91446 0.93369 0.91680 0.90798 0.87759 0.87297 0.91153 0.76302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.01 13.96 21.45 0.30 -56.71 16 2 C 0.03 1.78 5.47 84.66 0.46 2.24 16 3 Si 0.91 44.19 26.77 68.60 1.84 46.02 16 4 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.25 -11.57 6.21 99.48 0.62 -10.96 16 7 C -0.48 -25.97 7.21 25.60 0.18 -25.78 16 8 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 9 C 0.05 2.36 1.45 -11.54 -0.02 2.34 16 10 H 0.03 1.48 4.21 -2.39 -0.01 1.47 16 11 C -0.11 -4.84 3.38 -10.79 -0.04 -4.88 16 12 C -0.16 -6.81 9.10 30.60 0.28 -6.53 16 13 C -0.19 -8.19 9.77 30.59 0.30 -7.90 16 14 C -0.09 -3.41 2.00 -11.68 -0.02 -3.44 16 15 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 16 C -0.11 -3.66 4.84 30.73 0.15 -3.51 16 17 C -0.13 -3.01 6.02 30.68 0.18 -2.82 16 18 C 0.11 2.07 7.17 86.49 0.62 2.69 16 19 N -0.72 -18.72 5.45 -467.33 -2.55 -21.27 16 20 C 0.51 18.54 7.29 87.71 0.64 19.18 16 21 O -0.58 -24.07 14.18 -3.03 -0.04 -24.11 16 22 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 23 H 0.08 3.71 7.89 -2.39 -0.02 3.69 16 24 H 0.07 2.84 8.03 -2.39 -0.02 2.82 16 25 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 26 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 27 H 0.07 3.24 7.38 -2.39 -0.02 3.22 16 28 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 29 H 0.06 2.56 7.64 -2.39 -0.02 2.54 16 30 H 0.07 1.63 8.12 -2.39 -0.02 1.61 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.40 8.91 8.80 -92.70 -0.82 8.09 16 Total: -1.00 -66.40 269.87 2.47 -63.93 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.18 Total: 20.52 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 2.74 Total: -28.40 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -2.25 Total: -77.98 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.04 Total: -24.11 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.84 Total: 46.02 kcal Total: -66.40 2.47 -63.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.625 kcal (2) G-P(sol) polarization free energy of solvation -66.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds