Wall clock time and date at job start Mon Mar 30 2020 03:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 120.00126 * 2 1 4 4 H 1.48500 * 109.47251 * 270.00265 * 3 2 1 5 5 H 1.48502 * 109.47021 * 29.99748 * 3 2 1 6 6 H 1.48494 * 109.47015 * 150.00213 * 3 2 1 7 7 C 1.37875 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47014 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.40215 * 304.82125 * 10 9 7 12 12 C 1.53073 * 109.39903 * 184.99882 * 10 9 7 13 13 C 1.53348 * 108.45310 * 190.95191 * 12 10 9 14 14 C 1.52967 * 108.65052 * 67.49537 * 13 12 10 15 15 N 1.45761 * 110.51983 * 309.30643 * 14 13 12 16 16 C 1.46494 * 117.94779 * 199.05391 * 15 14 13 17 17 C 1.53004 * 117.50184 * 3.05204 * 16 15 14 18 18 C 1.52998 * 117.49870 * 294.39126 * 16 15 14 19 19 C 1.33349 * 124.10151 * 19.03135 * 15 14 13 20 20 O 1.21286 * 118.24487 * 177.77660 * 19 15 14 21 21 H 0.97003 * 119.99738 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47167 * 59.99817 * 9 7 2 23 23 H 1.09004 * 109.46954 * 299.99680 * 9 7 2 24 24 H 1.09001 * 109.67626 * 310.70111 * 12 10 9 25 25 H 1.09003 * 109.67787 * 71.20254 * 12 10 9 26 26 H 1.09003 * 109.60128 * 187.30560 * 13 12 10 27 27 H 1.08994 * 109.60312 * 307.79014 * 13 12 10 28 28 H 1.09004 * 109.30467 * 188.97395 * 14 13 12 29 29 H 1.09001 * 109.27009 * 69.61837 * 14 13 12 30 30 H 1.08999 * 115.55095 * 148.72096 * 16 15 14 31 31 H 1.09000 * 117.49675 * 0.02562 * 17 16 15 32 32 H 1.08999 * 117.50075 * 145.01979 * 17 16 15 33 33 H 1.09000 * 117.50275 * 214.97841 * 18 16 15 34 34 H 1.09002 * 117.50055 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9268 -3.5557 -0.8435 12 6 1.4824 -4.9831 -0.1253 13 6 2.4568 -6.1345 0.1515 14 6 2.8697 -6.0828 1.6235 15 7 3.3188 -4.7430 1.9814 16 6 4.1370 -4.5925 3.1871 17 6 4.5204 -5.8655 3.9443 18 6 3.4790 -4.9095 4.5315 19 6 3.0318 -3.6460 1.2798 20 8 3.4267 -2.5779 1.6973 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6240 -2.5566 0.8904 24 1 0.6694 -5.0080 0.6003 25 1 1.0780 -5.0789 -1.1329 26 1 1.9680 -7.0858 -0.0591 27 1 3.3391 -6.0265 -0.4793 28 1 3.6792 -6.7921 1.7958 29 1 2.0175 -6.3554 2.2459 30 1 4.8663 -3.7828 3.1623 31 1 4.1642 -6.8151 3.5451 32 1 5.5018 -5.8932 4.4179 33 1 3.7757 -4.3087 5.3913 34 1 2.4372 -5.2298 4.5189 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260403823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:55 Heat of formation + Delta-G solvation = -14.016201 kcal Electronic energy + Delta-G solvation = -15770.730777 eV Core-core repulsion = 13283.176739 eV Total energy + Delta-G solvation = -2487.554038 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.11978 -36.97054 -35.64951 -33.40267 -31.75555 -29.91860 -26.94626 -24.25466 -22.95037 -22.28072 -21.44919 -20.40158 -18.00337 -16.70115 -16.31577 -15.81676 -14.88804 -14.46421 -14.15520 -14.01508 -13.55288 -13.13502 -12.79468 -12.11126 -11.98639 -11.58901 -11.24734 -11.10242 -11.01996 -10.82746 -10.70670 -10.45399 -10.37352 -10.30763 -10.19447 -9.36211 -8.97662 -8.49982 -8.12369 -8.07139 -5.81022 -3.76434 3.33523 3.43950 3.46359 3.51299 3.60879 4.01158 4.65571 4.84821 4.94180 4.97098 5.00167 5.14698 5.27666 5.40073 5.55304 5.57620 5.65185 5.76959 5.89477 5.92847 6.06843 6.09028 6.15763 6.22832 6.39944 6.66711 6.80978 6.97176 7.66850 7.76466 8.04634 8.22105 8.58315 9.03959 9.28815 9.84017 11.31502 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032654 B = 0.008540 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.257853 B = 3277.997289 C = 3841.477507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.049 3.951 3 Si 0.891 3.109 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.487 4.487 8 H 0.066 0.934 9 C 0.038 3.962 10 C -0.092 4.092 11 H 0.090 0.910 12 C -0.121 4.121 13 C -0.134 4.134 14 C 0.116 3.884 15 N -0.593 5.593 16 C 0.086 3.914 17 C -0.193 4.193 18 C -0.193 4.193 19 C 0.520 3.480 20 O -0.507 6.507 21 H 0.256 0.744 22 H 0.026 0.974 23 H 0.016 0.984 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -15.153 3.862 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.149 4.149 3 Si 0.720 3.280 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.526 4.526 8 H 0.084 0.916 9 C 0.001 3.999 10 C -0.113 4.113 11 H 0.108 0.892 12 C -0.159 4.159 13 C -0.172 4.172 14 C -0.007 4.007 15 N -0.328 5.328 16 C -0.019 4.019 17 C -0.230 4.230 18 C -0.232 4.232 19 C 0.309 3.691 20 O -0.379 6.379 21 H 0.066 0.934 22 H 0.044 0.956 23 H 0.035 0.965 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.017 -14.417 4.032 16.135 hybrid contribution 0.323 0.787 0.166 0.867 sum 6.341 -13.631 4.198 15.608 Atomic orbital electron populations 1.69969 1.05973 1.26185 1.52814 1.24966 0.94762 0.99123 0.96092 0.86592 0.80139 0.83614 0.77700 1.21023 1.21573 1.19810 1.21300 0.93638 0.90113 1.47525 0.91581 1.19067 0.92753 0.90495 0.97608 1.21418 0.98678 0.97339 0.93913 0.89169 1.21791 0.97956 0.93652 1.02464 1.21893 1.00382 0.99777 0.95107 1.21319 0.98893 0.84144 0.96372 1.47067 1.53008 1.07398 1.25373 1.21556 0.97601 0.99101 0.83665 1.23332 1.00436 0.94842 1.04433 1.23311 0.98280 1.03376 0.98261 1.20503 0.80129 0.82521 0.85993 1.90742 1.50601 1.28161 1.68417 0.93417 0.95550 0.96519 0.91575 0.91027 0.90514 0.91247 0.91306 0.92677 0.85410 0.88431 0.88298 0.88435 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.54 13.29 55.43 0.74 -27.81 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 23.49 29.54 -169.99 -5.02 18.47 16 4 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.49 -14.59 7.66 -34.44 -0.26 -14.85 16 8 H 0.07 2.02 6.60 -52.48 -0.35 1.67 16 9 C 0.04 1.01 4.38 -27.89 -0.12 0.89 16 10 C -0.09 -1.92 2.42 -91.99 -0.22 -2.15 16 11 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 12 C -0.12 -1.91 5.33 -26.51 -0.14 -2.05 16 13 C -0.13 -1.62 6.03 -26.57 -0.16 -1.78 16 14 C 0.12 1.46 5.54 -4.46 -0.02 1.43 16 15 N -0.59 -9.99 3.14 -167.34 -0.53 -10.52 16 16 C 0.09 1.31 5.91 -67.93 -0.40 0.91 16 17 C -0.19 -2.11 9.66 -26.69 -0.26 -2.37 16 18 C -0.19 -2.52 10.36 -26.69 -0.28 -2.80 16 19 C 0.52 11.18 7.04 -11.87 -0.08 11.10 16 20 O -0.51 -13.24 13.44 5.55 0.07 -13.17 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 22 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 28 H 0.07 0.71 6.40 -51.93 -0.33 0.38 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.13 2.13 7.60 -51.93 -0.39 1.74 16 31 H 0.10 0.94 6.18 -51.93 -0.32 0.62 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 275.09 15.07 4.15 4.15 Total: -1.00 -34.37 275.09 -7.82 -42.18 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.18 Total: -3.04 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.05 Total: -10.26 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.21 Total: -38.32 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.17 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.47 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.37 -7.82 -42.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.168 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds