Wall clock time and date at job start Mon Mar 30 2020 03:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 120.00126 * 2 1 4 4 H 1.48500 * 109.47251 * 270.00265 * 3 2 1 5 5 H 1.48502 * 109.47021 * 29.99748 * 3 2 1 6 6 H 1.48494 * 109.47015 * 150.00213 * 3 2 1 7 7 C 1.37875 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47014 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.40215 * 304.82125 * 10 9 7 12 12 C 1.53073 * 109.39903 * 184.99882 * 10 9 7 13 13 C 1.53348 * 108.45310 * 190.95191 * 12 10 9 14 14 C 1.52967 * 108.65052 * 67.49537 * 13 12 10 15 15 N 1.45761 * 110.51983 * 309.30643 * 14 13 12 16 16 C 1.46494 * 117.94779 * 199.05391 * 15 14 13 17 17 C 1.53004 * 117.50184 * 3.05204 * 16 15 14 18 18 C 1.52998 * 117.49870 * 294.39126 * 16 15 14 19 19 C 1.33349 * 124.10151 * 19.03135 * 15 14 13 20 20 O 1.21286 * 118.24487 * 177.77660 * 19 15 14 21 21 H 0.97003 * 119.99738 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47167 * 59.99817 * 9 7 2 23 23 H 1.09004 * 109.46954 * 299.99680 * 9 7 2 24 24 H 1.09001 * 109.67626 * 310.70111 * 12 10 9 25 25 H 1.09003 * 109.67787 * 71.20254 * 12 10 9 26 26 H 1.09003 * 109.60128 * 187.30560 * 13 12 10 27 27 H 1.08994 * 109.60312 * 307.79014 * 13 12 10 28 28 H 1.09004 * 109.30467 * 188.97395 * 14 13 12 29 29 H 1.09001 * 109.27009 * 69.61837 * 14 13 12 30 30 H 1.08999 * 115.55095 * 148.72096 * 16 15 14 31 31 H 1.09000 * 117.49675 * 0.02562 * 17 16 15 32 32 H 1.08999 * 117.50075 * 145.01979 * 17 16 15 33 33 H 1.09000 * 117.50275 * 214.97841 * 18 16 15 34 34 H 1.09002 * 117.50055 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9268 -3.5557 -0.8435 12 6 1.4824 -4.9831 -0.1253 13 6 2.4568 -6.1345 0.1515 14 6 2.8697 -6.0828 1.6235 15 7 3.3188 -4.7430 1.9814 16 6 4.1370 -4.5925 3.1871 17 6 4.5204 -5.8655 3.9443 18 6 3.4790 -4.9095 4.5315 19 6 3.0318 -3.6460 1.2798 20 8 3.4267 -2.5779 1.6973 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6240 -2.5566 0.8904 24 1 0.6694 -5.0080 0.6003 25 1 1.0780 -5.0789 -1.1329 26 1 1.9680 -7.0858 -0.0591 27 1 3.3391 -6.0265 -0.4793 28 1 3.6792 -6.7921 1.7958 29 1 2.0175 -6.3554 2.2459 30 1 4.8663 -3.7828 3.1623 31 1 4.1642 -6.8151 3.5451 32 1 5.5018 -5.8932 4.4179 33 1 3.7757 -4.3087 5.3913 34 1 2.4372 -5.2298 4.5189 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260403823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:55 Heat of formation + Delta-G solvation = -36.735443 kcal Electronic energy + Delta-G solvation = -15771.715957 eV Core-core repulsion = 13283.176739 eV Total energy + Delta-G solvation = -2488.539218 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.55494 -38.30330 -37.07414 -35.32143 -33.52539 -31.43676 -28.72968 -25.83352 -24.57777 -23.38749 -22.78035 -21.89482 -19.34560 -18.43731 -17.95719 -17.38293 -16.62864 -16.18682 -15.47070 -15.34139 -15.03788 -14.47636 -14.27609 -13.88596 -13.52446 -13.17181 -12.89995 -12.68220 -12.52220 -12.43403 -12.33399 -12.04111 -11.92544 -11.58127 -11.38747 -11.36016 -10.96576 -10.59665 -10.17053 -9.36943 -8.15237 -6.17181 1.33279 1.36440 1.49348 1.83567 2.05978 2.44145 2.93839 3.18118 3.77884 3.84647 3.90864 3.93021 4.03300 4.10514 4.13509 4.50620 4.58820 4.64142 4.75107 4.83671 4.92150 4.98551 5.06964 5.12651 5.14216 5.20492 5.36245 5.45272 5.59306 5.73939 5.84617 6.30046 6.64347 6.92520 7.43090 7.50293 8.97282 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032654 B = 0.008540 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.257853 B = 3277.997289 C = 3841.477507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.501 4.501 8 H 0.053 0.947 9 C 0.045 3.955 10 C -0.091 4.091 11 H 0.090 0.910 12 C -0.115 4.115 13 C -0.124 4.124 14 C 0.104 3.896 15 N -0.583 5.583 16 C 0.039 3.961 17 C -0.144 4.144 18 C -0.198 4.198 19 C 0.512 3.488 20 O -0.572 6.572 21 H 0.260 0.740 22 H 0.013 0.987 23 H -0.018 1.018 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.920 -17.788 4.111 19.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.203 4.203 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.008 3.992 10 C -0.112 4.112 11 H 0.108 0.892 12 C -0.153 4.153 13 C -0.161 4.161 14 C -0.017 4.017 15 N -0.316 5.316 16 C -0.065 4.065 17 C -0.181 4.181 18 C -0.236 4.236 19 C 0.302 3.698 20 O -0.450 6.450 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.000 1.000 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.138 0.862 27 H 0.093 0.907 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.119 0.881 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.972 -17.125 4.285 18.980 hybrid contribution 0.028 1.544 0.141 1.551 sum 6.999 -15.582 4.426 17.645 Atomic orbital electron populations 1.70075 1.07262 1.27195 1.53730 1.25826 0.95758 1.02813 0.95922 0.85591 0.78344 0.79424 0.78546 1.19030 1.20639 1.20549 1.21602 0.93281 0.91999 1.47036 0.92892 1.18867 0.93223 0.92032 0.95110 1.21251 0.97871 0.98005 0.94071 0.89226 1.21742 0.98100 0.92252 1.03178 1.21904 0.99728 0.99729 0.94770 1.21756 1.00768 0.82164 0.97044 1.46991 1.51770 1.07873 1.24957 1.21665 0.98674 1.01999 0.84190 1.23472 1.00673 0.93530 1.00420 1.23366 0.99001 1.04437 0.96831 1.20565 0.79823 0.83047 0.86415 1.90695 1.53338 1.30812 1.70115 0.93147 0.96847 0.99953 0.92372 0.89687 0.86242 0.90747 0.87600 0.91249 0.88201 0.85906 0.86032 0.88052 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.83 13.29 21.45 0.28 -60.55 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.96 49.54 29.54 68.60 2.03 51.56 16 4 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.28 -14.73 7.11 99.48 0.71 -14.02 16 7 C -0.50 -31.32 7.66 25.60 0.20 -31.13 16 8 H 0.05 3.39 6.60 -2.91 -0.02 3.38 16 9 C 0.05 2.51 4.38 29.85 0.13 2.64 16 10 C -0.09 -3.87 2.42 -11.68 -0.03 -3.90 16 11 H 0.09 3.77 8.14 -2.39 -0.02 3.75 16 12 C -0.12 -3.47 5.33 30.74 0.16 -3.31 16 13 C -0.12 -2.52 6.03 30.70 0.18 -2.33 16 14 C 0.10 2.21 5.54 86.51 0.48 2.69 16 15 N -0.58 -19.08 3.14 -802.53 -2.52 -21.60 16 16 C 0.04 1.17 5.91 44.99 0.27 1.44 16 17 C -0.14 -2.58 9.66 30.62 0.30 -2.29 16 18 C -0.20 -4.82 10.36 30.62 0.32 -4.50 16 19 C 0.51 22.69 7.04 87.71 0.62 23.31 16 20 O -0.57 -31.60 13.44 -3.05 -0.04 -31.64 16 21 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 22 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 23 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 24 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.12 1.53 8.14 -2.39 -0.02 1.52 16 27 H 0.07 1.49 8.12 -2.39 -0.02 1.47 16 28 H 0.11 1.56 6.40 -2.38 -0.02 1.54 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 3.49 7.60 -2.39 -0.02 3.47 16 31 H 0.12 1.63 6.18 -2.39 -0.01 1.62 16 32 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -79.93 275.09 3.90 -76.03 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.07 Total: 3.61 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 3.09 Total: -17.40 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -2.24 Total: -82.15 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.04 Total: -31.64 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.03 Total: 51.56 kcal Total: -79.93 3.90 -76.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.291 kcal (2) G-P(sol) polarization free energy of solvation -79.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds