Wall clock time and date at job start Mon Mar 30 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00096 * 2 1 4 4 H 1.48495 * 109.47235 * 270.00222 * 3 2 1 5 5 H 1.48499 * 109.46914 * 30.00850 * 3 2 1 6 6 H 1.48504 * 109.47083 * 150.00365 * 3 2 1 7 7 C 1.37879 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99962 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47237 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.40189 * 55.17432 * 10 9 7 12 12 C 1.53076 * 109.39936 * 175.00094 * 10 9 7 13 13 C 1.53345 * 108.42323 * 169.02661 * 12 10 9 14 14 C 1.52915 * 108.67740 * 292.47082 * 13 12 10 15 15 N 1.45756 * 110.48947 * 50.75223 * 14 13 12 16 16 C 1.46497 * 117.94848 * 160.92874 * 15 14 13 17 17 C 1.53005 * 117.49732 * 65.58112 * 16 15 14 18 18 C 1.52995 * 60.00057 * 252.51359 * 17 16 15 19 19 C 1.33356 * 124.10375 * 341.20543 * 15 14 13 20 20 O 1.21284 * 118.24408 * 181.94573 * 19 15 14 21 21 H 0.97003 * 119.99779 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47007 * 60.00137 * 9 7 2 23 23 H 1.09000 * 109.46894 * 300.00108 * 9 7 2 24 24 H 1.08998 * 109.67465 * 49.29707 * 12 10 9 25 25 H 1.08996 * 109.66989 * 288.75800 * 12 10 9 26 26 H 1.08996 * 109.60453 * 172.70506 * 13 12 10 27 27 H 1.09010 * 109.73717 * 52.30638 * 13 12 10 28 28 H 1.08999 * 109.29808 * 290.44224 * 14 13 12 29 29 H 1.08998 * 109.30054 * 171.06651 * 14 13 12 30 30 H 1.08991 * 115.56468 * 211.27214 * 16 15 14 31 31 H 1.09006 * 117.49548 * 145.02054 * 17 16 15 32 32 H 1.08995 * 117.50421 * 0.02562 * 17 16 15 33 33 H 1.08997 * 117.50138 * 107.49307 * 18 17 16 34 34 H 1.09002 * 117.50159 * 252.51382 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9268 -3.5558 0.8434 12 6 1.4823 -4.9832 0.1253 13 6 2.4571 -6.1340 -0.1521 14 6 2.8692 -6.0828 -1.6238 15 7 3.3186 -4.7432 -1.9814 16 6 4.1368 -4.5925 -3.1873 17 6 3.4788 -4.9097 -4.5316 18 6 4.5194 -5.8655 -3.9449 19 6 3.0361 -3.6467 -1.2769 20 8 3.4353 -2.5792 -1.6917 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 0.6693 -5.0081 -0.6003 25 1 1.0786 -5.0792 1.1331 26 1 1.9689 -7.0856 0.0581 27 1 3.3399 -6.0289 0.4787 28 1 2.0168 -6.3549 -2.2462 29 1 3.6784 -6.7923 -1.7963 30 1 4.8663 -3.7832 -3.1625 31 1 3.7754 -4.3088 -5.3914 32 1 2.4370 -5.2300 -4.5190 33 1 4.1624 -6.8151 -3.5462 34 1 5.5007 -5.8936 -4.4186 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260403828.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:58 Heat of formation + Delta-G solvation = -14.141520 kcal Electronic energy + Delta-G solvation = -15769.592598 eV Core-core repulsion = 13282.033126 eV Total energy + Delta-G solvation = -2487.559472 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.12346 -36.97584 -35.65447 -33.40519 -31.75800 -29.92211 -26.94834 -24.25677 -22.95426 -22.27938 -21.45253 -20.40604 -18.00321 -16.70584 -16.31796 -15.81562 -14.89203 -14.46495 -14.15951 -14.01570 -13.55386 -13.13590 -12.79838 -12.11316 -11.98851 -11.58893 -11.24422 -11.10483 -11.02880 -10.83892 -10.70104 -10.44083 -10.39244 -10.31890 -10.18503 -9.36765 -8.98317 -8.48955 -8.13000 -8.07345 -5.81160 -3.76588 3.33238 3.44031 3.47456 3.52292 3.57693 4.01103 4.65270 4.84758 4.94199 4.97031 5.00010 5.14645 5.27448 5.39930 5.55231 5.57495 5.65080 5.76943 5.89383 5.92732 6.06832 6.08922 6.15654 6.22729 6.39861 6.66663 6.80983 6.96969 7.66811 7.76379 8.04391 8.22017 8.58235 9.03490 9.28801 9.83873 11.31380 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032647 B = 0.008539 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.459620 B = 3278.397289 C = 3841.430445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.049 3.951 3 Si 0.893 3.107 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.488 4.488 8 H 0.066 0.934 9 C 0.038 3.962 10 C -0.092 4.092 11 H 0.090 0.910 12 C -0.121 4.121 13 C -0.134 4.134 14 C 0.116 3.884 15 N -0.593 5.593 16 C 0.086 3.914 17 C -0.193 4.193 18 C -0.193 4.193 19 C 0.520 3.480 20 O -0.508 6.508 21 H 0.256 0.744 22 H 0.016 0.984 23 H 0.027 0.973 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.942 -15.157 -3.849 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.149 4.149 3 Si 0.722 3.278 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.526 4.526 8 H 0.084 0.916 9 C 0.001 3.999 10 C -0.113 4.113 11 H 0.108 0.892 12 C -0.158 4.158 13 C -0.172 4.172 14 C -0.007 4.007 15 N -0.328 5.328 16 C -0.019 4.019 17 C -0.232 4.232 18 C -0.230 4.230 19 C 0.309 3.691 20 O -0.380 6.380 21 H 0.066 0.934 22 H 0.035 0.965 23 H 0.045 0.955 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.992 -14.423 -4.007 16.124 hybrid contribution 0.337 0.782 -0.192 0.873 sum 6.330 -13.641 -4.199 15.613 Atomic orbital electron populations 1.69968 1.05967 1.26183 1.52816 1.24968 0.94765 0.99126 0.96090 0.86566 0.79712 0.83583 0.77928 1.20942 1.21674 1.20044 1.21305 0.93652 0.90115 1.47539 0.91561 1.19065 0.92745 0.90484 0.97615 1.21413 0.98630 0.97352 0.93953 0.89197 1.21786 0.97947 0.93637 1.02464 1.21882 1.00390 0.99791 0.95107 1.21310 0.98896 0.84141 0.96373 1.47066 1.53071 1.07447 1.25246 1.21556 0.97613 0.99110 0.83666 1.23299 0.98292 1.03374 0.98253 1.23320 1.00445 0.94845 1.04431 1.20501 0.80174 0.82508 0.85926 1.90734 1.50603 1.28193 1.68481 0.93412 0.96526 0.95523 0.91559 0.91017 0.90538 0.91248 0.92656 0.91313 0.85395 0.88437 0.88805 0.88434 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.53 13.29 55.43 0.74 -27.79 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 23.56 29.54 -169.99 -5.02 18.54 16 4 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.49 -14.60 7.67 -34.44 -0.26 -14.86 16 8 H 0.07 2.02 6.59 -52.49 -0.35 1.68 16 9 C 0.04 1.01 4.38 -27.88 -0.12 0.89 16 10 C -0.09 -1.92 2.41 -92.00 -0.22 -2.15 16 11 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 12 C -0.12 -1.90 5.34 -26.51 -0.14 -2.05 16 13 C -0.13 -1.62 6.02 -26.60 -0.16 -1.78 16 14 C 0.12 1.46 5.53 -4.49 -0.02 1.43 16 15 N -0.59 -9.98 3.14 -167.38 -0.53 -10.50 16 16 C 0.09 1.30 5.92 -67.93 -0.40 0.90 16 17 C -0.19 -2.52 10.36 -26.73 -0.28 -2.79 16 18 C -0.19 -2.11 9.66 -26.73 -0.26 -2.37 16 19 C 0.52 11.18 7.05 -11.88 -0.08 11.10 16 20 O -0.51 -13.23 13.44 5.55 0.07 -13.15 16 21 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.83 8.13 -51.92 -0.42 0.41 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.71 6.40 -51.93 -0.33 0.37 16 30 H 0.13 2.13 7.60 -51.93 -0.39 1.74 16 31 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.10 0.94 6.18 -51.93 -0.32 0.62 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 275.08 15.07 4.15 4.15 Total: -1.00 -34.31 275.08 -7.82 -42.13 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -5.18 Total: -3.09 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -2.05 Total: -10.28 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.21 Total: -38.30 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.07 Total: -13.15 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.54 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.31 -7.82 -42.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403828.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.986 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds