Wall clock time and date at job start Mon Mar 30 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00096 * 2 1 4 4 H 1.48495 * 109.47235 * 270.00222 * 3 2 1 5 5 H 1.48499 * 109.46914 * 30.00850 * 3 2 1 6 6 H 1.48504 * 109.47083 * 150.00365 * 3 2 1 7 7 C 1.37879 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99962 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47237 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.40189 * 55.17432 * 10 9 7 12 12 C 1.53076 * 109.39936 * 175.00094 * 10 9 7 13 13 C 1.53345 * 108.42323 * 169.02661 * 12 10 9 14 14 C 1.52915 * 108.67740 * 292.47082 * 13 12 10 15 15 N 1.45756 * 110.48947 * 50.75223 * 14 13 12 16 16 C 1.46497 * 117.94848 * 160.92874 * 15 14 13 17 17 C 1.53005 * 117.49732 * 65.58112 * 16 15 14 18 18 C 1.52995 * 60.00057 * 252.51359 * 17 16 15 19 19 C 1.33356 * 124.10375 * 341.20543 * 15 14 13 20 20 O 1.21284 * 118.24408 * 181.94573 * 19 15 14 21 21 H 0.97003 * 119.99779 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47007 * 60.00137 * 9 7 2 23 23 H 1.09000 * 109.46894 * 300.00108 * 9 7 2 24 24 H 1.08998 * 109.67465 * 49.29707 * 12 10 9 25 25 H 1.08996 * 109.66989 * 288.75800 * 12 10 9 26 26 H 1.08996 * 109.60453 * 172.70506 * 13 12 10 27 27 H 1.09010 * 109.73717 * 52.30638 * 13 12 10 28 28 H 1.08999 * 109.29808 * 290.44224 * 14 13 12 29 29 H 1.08998 * 109.30054 * 171.06651 * 14 13 12 30 30 H 1.08991 * 115.56468 * 211.27214 * 16 15 14 31 31 H 1.09006 * 117.49548 * 145.02054 * 17 16 15 32 32 H 1.08995 * 117.50421 * 0.02562 * 17 16 15 33 33 H 1.08997 * 117.50138 * 107.49307 * 18 17 16 34 34 H 1.09002 * 117.50159 * 252.51382 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9268 -3.5558 0.8434 12 6 1.4823 -4.9832 0.1253 13 6 2.4571 -6.1340 -0.1521 14 6 2.8692 -6.0828 -1.6238 15 7 3.3186 -4.7432 -1.9814 16 6 4.1368 -4.5925 -3.1873 17 6 3.4788 -4.9097 -4.5316 18 6 4.5194 -5.8655 -3.9449 19 6 3.0361 -3.6467 -1.2769 20 8 3.4353 -2.5792 -1.6917 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 0.6693 -5.0081 -0.6003 25 1 1.0786 -5.0792 1.1331 26 1 1.9689 -7.0856 0.0581 27 1 3.3399 -6.0289 0.4787 28 1 2.0168 -6.3549 -2.2462 29 1 3.6784 -6.7923 -1.7963 30 1 4.8663 -3.7832 -3.1625 31 1 3.7754 -4.3088 -5.3914 32 1 2.4370 -5.2300 -4.5190 33 1 4.1624 -6.8151 -3.5462 34 1 5.5007 -5.8936 -4.4186 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260403828.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:57 Heat of formation + Delta-G solvation = -36.787490 kcal Electronic energy + Delta-G solvation = -15770.574601 eV Core-core repulsion = 13282.033126 eV Total energy + Delta-G solvation = -2488.541475 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.55572 -38.30578 -37.07625 -35.32319 -33.52678 -31.43824 -28.73117 -25.83377 -24.58167 -23.38436 -22.78198 -21.89683 -19.34317 -18.43814 -17.95939 -17.37986 -16.63116 -16.18837 -15.46957 -15.34248 -15.03522 -14.47630 -14.27932 -13.88798 -13.52526 -13.17259 -12.91163 -12.69724 -12.52406 -12.43094 -12.30827 -12.04028 -11.92485 -11.58150 -11.38833 -11.36388 -10.96258 -10.59822 -10.17475 -9.36803 -8.15338 -6.17288 1.33353 1.37333 1.47539 1.83337 2.06117 2.43813 2.94035 3.18062 3.77957 3.84709 3.91005 3.93122 4.03202 4.10806 4.13523 4.50668 4.58757 4.64210 4.75145 4.83763 4.92175 4.98627 5.07030 5.12660 5.14231 5.20609 5.36227 5.45359 5.59310 5.73950 5.84617 6.29986 6.64340 6.92524 7.42905 7.50143 8.97212 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032647 B = 0.008539 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.459620 B = 3278.397289 C = 3841.430445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.956 3.044 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.501 4.501 8 H 0.053 0.947 9 C 0.045 3.955 10 C -0.091 4.091 11 H 0.089 0.911 12 C -0.115 4.115 13 C -0.124 4.124 14 C 0.104 3.896 15 N -0.583 5.583 16 C 0.039 3.961 17 C -0.198 4.198 18 C -0.144 4.144 19 C 0.512 3.488 20 O -0.572 6.572 21 H 0.260 0.740 22 H -0.018 1.018 23 H 0.014 0.986 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.933 -17.809 -4.136 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.203 4.203 3 Si 0.782 3.218 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.008 3.992 10 C -0.112 4.112 11 H 0.107 0.893 12 C -0.152 4.152 13 C -0.162 4.162 14 C -0.017 4.017 15 N -0.316 5.316 16 C -0.065 4.065 17 C -0.236 4.236 18 C -0.181 4.181 19 C 0.302 3.698 20 O -0.450 6.450 21 H 0.069 0.931 22 H 0.001 0.999 23 H 0.032 0.968 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.137 0.863 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.987 -17.148 -4.299 19.010 hybrid contribution 0.027 1.544 -0.157 1.552 sum 7.014 -15.604 -4.456 17.679 Atomic orbital electron populations 1.70072 1.07261 1.27197 1.53719 1.25825 0.95762 1.02800 0.95928 0.85584 0.78843 0.79546 0.77848 1.21132 1.19989 1.19244 1.21613 0.93312 0.91992 1.47023 0.92836 1.18865 0.93220 0.92020 0.95124 1.21245 0.97823 0.98016 0.94116 0.89286 1.21737 0.98094 0.92233 1.03177 1.21892 0.99744 0.99746 0.94780 1.21746 1.00767 0.82173 0.97035 1.46990 1.51844 1.07920 1.24822 1.21667 0.98685 1.02009 0.84180 1.23354 0.99007 1.04433 0.96830 1.23459 1.00684 0.93538 1.00429 1.20557 0.79879 0.83043 0.86347 1.90688 1.53310 1.30820 1.70164 0.93139 0.99947 0.96822 0.92346 0.89685 0.86274 0.90746 0.91229 0.87614 0.88155 0.88054 0.89009 0.85920 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.82 13.29 21.45 0.28 -60.53 16 2 C -0.01 -0.48 5.46 84.66 0.46 -0.01 16 3 Si 0.96 49.60 29.54 68.60 2.03 51.63 16 4 H -0.28 -14.79 7.11 99.48 0.71 -14.08 16 5 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.27 -13.44 7.11 99.48 0.71 -12.74 16 7 C -0.50 -31.31 7.67 25.60 0.20 -31.12 16 8 H 0.05 3.43 6.59 -2.91 -0.02 3.41 16 9 C 0.05 2.51 4.38 29.85 0.13 2.64 16 10 C -0.09 -3.87 2.41 -11.68 -0.03 -3.90 16 11 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 12 C -0.11 -3.46 5.34 30.74 0.16 -3.30 16 13 C -0.12 -2.52 6.02 30.68 0.18 -2.34 16 14 C 0.10 2.21 5.53 86.49 0.48 2.69 16 15 N -0.58 -19.03 3.14 -802.66 -2.52 -21.55 16 16 C 0.04 1.16 5.92 44.99 0.27 1.43 16 17 C -0.20 -4.80 10.36 30.59 0.32 -4.49 16 18 C -0.14 -2.58 9.66 30.59 0.30 -2.28 16 19 C 0.51 22.65 7.05 87.71 0.62 23.27 16 20 O -0.57 -31.48 13.44 -3.04 -0.04 -31.52 16 21 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 22 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 23 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.49 8.13 -2.38 -0.02 1.47 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.11 1.55 6.40 -2.39 -0.02 1.54 16 30 H 0.10 3.49 7.60 -2.39 -0.02 3.47 16 31 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.12 1.63 6.18 -2.39 -0.01 1.61 16 34 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -79.70 275.08 3.90 -75.80 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.07 Total: 3.60 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 3.08 Total: -17.41 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -2.24 Total: -82.09 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.04 Total: -31.52 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.03 Total: 51.63 kcal Total: -79.70 3.90 -75.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403828.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.008 kcal (2) G-P(sol) polarization free energy of solvation -79.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds