Wall clock time and date at job start Mon Mar 30 2020 02:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.94690 * 305.70285 * 10 9 7 12 12 C 1.54844 * 111.07800 * 181.62878 * 10 9 7 13 13 N 1.47670 * 101.86226 * 218.80642 * 12 10 9 14 14 C 1.28631 * 108.56325 * 14.89751 * 13 12 10 15 15 C 1.50702 * 122.93981 * 180.44286 * 14 13 12 16 16 C 1.54271 * 110.03249 * 92.90872 * 15 14 13 17 17 C 1.54964 * 104.16128 * 217.13727 * 16 15 14 18 18 C 1.54894 * 102.77554 * 37.88929 * 17 16 15 19 19 C 1.53875 * 110.03127 * 335.69418 * 15 14 13 20 20 O 1.34597 * 114.12623 * 0.44518 * 14 13 12 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09007 * 110.94267 * 336.93053 * 12 10 9 25 25 H 1.08997 * 110.94492 * 100.62318 * 12 10 9 26 26 H 1.09004 * 110.01840 * 214.30420 * 15 14 13 27 27 H 1.09000 * 110.48517 * 335.78807 * 16 15 14 28 28 H 1.09004 * 110.48546 * 98.42807 * 16 15 14 29 29 H 1.08994 * 110.72036 * 279.58039 * 17 16 15 30 30 H 1.09000 * 110.76479 * 156.22193 * 17 16 15 31 31 H 1.09005 * 110.48357 * 203.40595 * 18 17 16 32 32 H 1.09000 * 110.48606 * 80.75927 * 18 17 16 33 33 H 1.08999 * 110.03240 * 238.56957 * 19 15 14 34 34 H 1.09002 * 110.03492 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9501 -3.5722 -0.8261 12 6 1.5095 -5.0239 -0.0405 13 7 2.3363 -5.8432 0.8682 14 6 3.0982 -5.0598 1.5467 15 6 4.0859 -5.5603 2.5690 16 6 5.4676 -5.7635 1.9137 17 6 6.0291 -7.0348 2.5992 18 6 4.7717 -7.9270 2.7487 19 6 3.6437 -6.9351 3.1001 20 8 2.9363 -3.7539 1.2638 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 0.4919 -4.9284 0.3383 25 1 1.5110 -5.4373 -1.0491 26 1 4.1637 -4.8496 3.3918 27 1 5.3611 -5.9242 0.8408 28 1 6.1126 -4.9069 2.1098 29 1 6.4493 -6.7929 3.5753 30 1 6.7730 -7.5186 1.9662 31 1 4.9097 -8.6487 3.5539 32 1 4.5525 -8.4374 1.8109 33 1 3.5077 -6.8918 4.1807 34 1 2.7145 -7.2401 2.6188 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260408368.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:16 Heat of formation + Delta-G solvation = -40.232543 kcal Electronic energy + Delta-G solvation = -15294.437576 eV Core-core repulsion = 12805.746712 eV Total energy + Delta-G solvation = -2488.690864 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.71261 -37.89394 -33.79601 -32.98089 -31.24164 -28.94901 -28.70292 -25.89458 -23.07557 -21.92901 -20.78750 -20.72336 -18.79368 -17.00768 -16.65009 -15.86137 -15.45712 -14.55578 -14.28141 -13.71555 -13.35642 -13.17332 -12.73976 -12.50600 -11.93214 -11.78093 -11.27529 -11.17386 -11.14762 -11.11997 -10.98363 -10.71679 -10.60178 -10.53844 -10.19454 -10.09616 -9.63511 -8.59663 -8.53176 -8.39290 -6.41340 -4.10678 2.52847 3.42947 3.46141 3.62200 3.70570 4.36373 4.51546 4.61135 4.73628 4.93978 5.26131 5.36223 5.39542 5.44266 5.46658 5.54568 5.58264 5.63257 5.83164 5.84580 5.87462 5.98578 6.15199 6.18045 6.20621 6.28546 6.39679 6.48612 6.92802 7.09492 7.28352 8.07290 8.23311 8.40644 8.81136 9.59958 10.99144 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.044261 B = 0.006196 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.465096 B = 4518.289035 C = 4922.136943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.074 2.926 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.597 4.597 8 H 0.052 0.948 9 C 0.014 3.986 10 C 0.068 3.932 11 H 0.079 0.921 12 C -0.008 4.008 13 N -0.558 5.558 14 C 0.301 3.699 15 C -0.021 4.021 16 C -0.112 4.112 17 C -0.123 4.123 18 C -0.121 4.121 19 C -0.117 4.117 20 O -0.326 6.326 21 H 0.267 0.733 22 H 0.018 0.982 23 H 0.029 0.971 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.518 -13.035 4.532 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.902 3.098 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.635 4.635 8 H 0.071 0.929 9 C -0.023 4.023 10 C 0.011 3.989 11 H 0.097 0.903 12 C -0.137 4.137 13 N -0.295 5.295 14 C 0.075 3.925 15 C -0.040 4.040 16 C -0.150 4.150 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.155 4.155 20 O -0.228 6.228 21 H 0.078 0.922 22 H 0.037 0.963 23 H 0.047 0.953 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.104 -12.016 4.465 15.723 hybrid contribution 0.007 -0.828 -0.272 0.872 sum 9.111 -12.845 4.193 16.297 Atomic orbital electron populations 1.70777 1.06872 1.30492 1.46695 1.25883 0.96496 1.02825 0.93617 0.83472 0.74616 0.74862 0.76849 1.21361 1.21433 1.20947 1.21962 0.94460 0.91411 1.55686 0.92942 1.19370 0.93457 0.92233 0.97238 1.24309 0.94379 0.97017 0.83152 0.90309 1.24128 0.99236 0.91701 0.98683 1.74538 1.10547 1.31189 1.13254 1.25520 0.91966 0.81426 0.93562 1.20526 0.91346 0.97920 0.94258 1.22384 0.93889 0.98463 1.00292 1.22514 0.97461 0.95555 1.00519 1.22334 0.94492 0.97484 1.01550 1.22205 1.00376 0.92380 1.00529 1.87117 1.73161 1.23583 1.38979 0.92217 0.96336 0.95267 0.89691 0.89257 0.88513 0.91173 0.90725 0.91281 0.91426 0.91736 0.91380 0.91528 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.09 13.65 55.43 0.76 -27.34 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.68 29.90 -169.99 -5.08 20.60 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.60 -17.33 9.02 -34.44 -0.31 -17.64 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.01 0.37 4.00 -27.88 -0.11 0.25 16 10 C 0.07 1.52 3.66 -25.76 -0.09 1.42 16 11 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 12 C -0.01 -0.16 7.70 -2.43 -0.02 -0.18 16 13 N -0.56 -10.44 10.28 -56.94 -0.59 -11.03 16 14 C 0.30 5.56 6.68 -13.62 -0.09 5.47 16 15 C -0.02 -0.29 3.44 -90.65 -0.31 -0.60 16 16 C -0.11 -1.35 6.36 -25.03 -0.16 -1.51 16 17 C -0.12 -1.17 6.91 -24.70 -0.17 -1.34 16 18 C -0.12 -1.22 6.83 -25.07 -0.17 -1.39 16 19 C -0.12 -1.41 6.36 -25.61 -0.16 -1.58 16 20 O -0.33 -7.30 10.80 -15.57 -0.17 -7.47 16 21 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 22 H 0.02 0.51 8.01 -51.93 -0.42 0.10 16 23 H 0.03 0.77 8.01 -51.93 -0.42 0.35 16 24 H 0.08 1.64 7.91 -51.93 -0.41 1.23 16 25 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 26 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 0.93 7.85 -51.93 -0.41 0.53 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.25 6.71 -51.93 -0.35 0.90 16 LS Contribution 279.11 15.07 4.21 4.21 Total: -1.00 -31.76 279.11 -7.87 -39.63 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.30 Total: -1.86 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.70 Total: -16.74 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.17 Total: -38.36 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.17 Total: -7.47 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.76 -7.87 -39.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260408368.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.602 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds