Wall clock time and date at job start Mon Mar 30 2020 02:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.94690 * 305.70285 * 10 9 7 12 12 C 1.54844 * 111.07800 * 181.62878 * 10 9 7 13 13 N 1.47670 * 101.86226 * 218.80642 * 12 10 9 14 14 C 1.28631 * 108.56325 * 14.89751 * 13 12 10 15 15 C 1.50702 * 122.93981 * 180.44286 * 14 13 12 16 16 C 1.54271 * 110.03249 * 92.90872 * 15 14 13 17 17 C 1.54964 * 104.16128 * 217.13727 * 16 15 14 18 18 C 1.54894 * 102.77554 * 37.88929 * 17 16 15 19 19 C 1.53875 * 110.03127 * 335.69418 * 15 14 13 20 20 O 1.34597 * 114.12623 * 0.44518 * 14 13 12 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09007 * 110.94267 * 336.93053 * 12 10 9 25 25 H 1.08997 * 110.94492 * 100.62318 * 12 10 9 26 26 H 1.09004 * 110.01840 * 214.30420 * 15 14 13 27 27 H 1.09000 * 110.48517 * 335.78807 * 16 15 14 28 28 H 1.09004 * 110.48546 * 98.42807 * 16 15 14 29 29 H 1.08994 * 110.72036 * 279.58039 * 17 16 15 30 30 H 1.09000 * 110.76479 * 156.22193 * 17 16 15 31 31 H 1.09005 * 110.48357 * 203.40595 * 18 17 16 32 32 H 1.09000 * 110.48606 * 80.75927 * 18 17 16 33 33 H 1.08999 * 110.03240 * 238.56957 * 19 15 14 34 34 H 1.09002 * 110.03492 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9501 -3.5722 -0.8261 12 6 1.5095 -5.0239 -0.0405 13 7 2.3363 -5.8432 0.8682 14 6 3.0982 -5.0598 1.5467 15 6 4.0859 -5.5603 2.5690 16 6 5.4676 -5.7635 1.9137 17 6 6.0291 -7.0348 2.5992 18 6 4.7717 -7.9270 2.7487 19 6 3.6437 -6.9351 3.1001 20 8 2.9363 -3.7539 1.2638 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 0.4919 -4.9284 0.3383 25 1 1.5110 -5.4373 -1.0491 26 1 4.1637 -4.8496 3.3918 27 1 5.3611 -5.9242 0.8408 28 1 6.1126 -4.9069 2.1098 29 1 6.4493 -6.7929 3.5753 30 1 6.7730 -7.5186 1.9662 31 1 4.9097 -8.6487 3.5539 32 1 4.5525 -8.4374 1.8109 33 1 3.5077 -6.8918 4.1807 34 1 2.7145 -7.2401 2.6188 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260408368.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:15 Heat of formation + Delta-G solvation = -62.124902 kcal Electronic energy + Delta-G solvation = -15295.386900 eV Core-core repulsion = 12805.746712 eV Total energy + Delta-G solvation = -2489.640188 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.30212 -38.91088 -35.93483 -34.57291 -32.98563 -30.32342 -29.61122 -27.65638 -25.10290 -23.37684 -22.45339 -21.54589 -20.11515 -19.12611 -17.93859 -17.61561 -16.56474 -15.95568 -15.65487 -15.56784 -15.06501 -14.30723 -14.25184 -14.15982 -13.68078 -13.49603 -12.85339 -12.58997 -12.53085 -12.36842 -12.03742 -11.97058 -11.93478 -11.90261 -11.67235 -11.48641 -11.23925 -10.69776 -10.63580 -10.12216 -8.76514 -6.47327 1.05793 1.49946 1.58935 1.77601 2.23295 2.52001 3.00418 3.10004 3.55327 3.67426 3.71986 3.84406 3.99689 4.19951 4.39353 4.46025 4.50244 4.54852 4.57202 4.60107 4.78988 4.83797 4.94605 4.98311 5.11157 5.15419 5.24585 5.26104 5.41460 5.46439 5.52752 5.83869 6.06850 6.46070 6.67663 7.32357 8.64488 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.044261 B = 0.006196 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.465096 B = 4518.289035 C = 4922.136943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.035 4.035 3 Si 1.122 2.878 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.278 1.278 7 C -0.614 4.614 8 H 0.047 0.953 9 C 0.018 3.982 10 C 0.070 3.930 11 H 0.081 0.919 12 C -0.003 4.003 13 N -0.559 5.559 14 C 0.296 3.704 15 C -0.026 4.026 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.115 4.115 20 O -0.352 6.352 21 H 0.255 0.745 22 H -0.007 1.007 23 H 0.024 0.976 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.357 -13.699 5.232 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.233 4.233 3 Si 0.942 3.058 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.203 1.203 7 C -0.651 4.651 8 H 0.066 0.934 9 C -0.019 4.019 10 C 0.013 3.987 11 H 0.099 0.901 12 C -0.132 4.132 13 N -0.295 5.295 14 C 0.071 3.929 15 C -0.046 4.046 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.153 4.153 20 O -0.256 6.256 21 H 0.065 0.935 22 H 0.012 0.988 23 H 0.042 0.958 24 H 0.099 0.901 25 H 0.130 0.870 26 H 0.122 0.878 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.942 -12.725 5.165 17.559 hybrid contribution -0.590 -0.669 -0.474 1.010 sum 10.352 -13.394 4.690 17.566 Atomic orbital electron populations 1.70907 1.07835 1.29841 1.48514 1.27464 0.96563 1.06815 0.92425 0.82882 0.74193 0.70858 0.77845 1.19903 1.19365 1.20341 1.22308 0.94485 0.92888 1.55459 0.93421 1.19222 0.93832 0.93193 0.95667 1.24083 0.93976 0.97079 0.83594 0.90085 1.24108 0.98734 0.90148 1.00189 1.74565 1.10731 1.30736 1.13432 1.26401 0.92471 0.79884 0.94153 1.20879 0.91269 0.99004 0.93407 1.22419 0.92896 1.00310 0.99425 1.22509 0.97349 0.93799 1.01397 1.22329 0.93794 0.97403 1.01939 1.22216 1.00123 0.91586 1.01343 1.87077 1.73421 1.26074 1.39015 0.93517 0.98828 0.95829 0.90120 0.86957 0.87828 0.92817 0.90112 0.89459 0.90058 0.89436 0.92302 0.89658 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.40 13.65 21.45 0.29 -58.11 16 2 C -0.04 -2.07 5.46 84.65 0.46 -1.61 16 3 Si 1.12 51.09 29.90 68.60 2.05 53.14 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.61 -36.12 9.02 25.60 0.23 -35.89 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.02 0.97 4.00 29.85 0.12 1.08 16 10 C 0.07 3.14 3.66 31.22 0.11 3.25 16 11 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 12 C 0.00 -0.10 7.70 86.78 0.67 0.57 16 13 N -0.56 -20.68 10.28 -449.28 -4.62 -25.29 16 14 C 0.30 10.86 6.68 88.58 0.59 11.45 16 15 C -0.03 -0.70 3.44 -10.81 -0.04 -0.73 16 16 C -0.11 -2.50 6.36 31.70 0.20 -2.30 16 17 C -0.11 -1.80 6.91 31.91 0.22 -1.57 16 18 C -0.12 -2.03 6.83 31.67 0.22 -1.82 16 19 C -0.11 -2.56 6.36 31.32 0.20 -2.36 16 20 O -0.35 -15.94 10.80 -78.62 -0.85 -16.78 16 21 H 0.26 16.11 7.22 -92.71 -0.67 15.44 16 22 H -0.01 -0.38 8.01 -2.39 -0.02 -0.40 16 23 H 0.02 1.28 8.01 -2.38 -0.02 1.26 16 24 H 0.08 3.15 7.91 -2.38 -0.02 3.13 16 25 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 26 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 27 H 0.05 1.37 7.85 -2.39 -0.02 1.35 16 28 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.80 6.71 -2.39 -0.02 1.79 16 Total: -1.00 -68.48 279.11 1.03 -67.45 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.16 Total: 9.52 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 2.99 Total: -29.92 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -4.32 Total: -83.40 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.85 Total: -16.78 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.14 kcal Total: -68.48 1.03 -67.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260408368.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.327 kcal (2) G-P(sol) polarization free energy of solvation -68.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds