Wall clock time and date at job start Mon Mar 30 2020 02:41:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 120.00017 * 2 1
4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1
5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1
6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1
7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1
9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1
10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2
11 11 H 1.09001 * 110.94690 * 305.70285 * 10 9 7
12 12 C 1.54844 * 111.07800 * 181.62878 * 10 9 7
13 13 N 1.47670 * 101.86226 * 218.80642 * 12 10 9
14 14 C 1.28631 * 108.56325 * 14.89751 * 13 12 10
15 15 C 1.50702 * 122.93981 * 180.44286 * 14 13 12
16 16 C 1.54271 * 110.03249 * 92.90872 * 15 14 13
17 17 C 1.54964 * 104.16128 * 217.13727 * 16 15 14
18 18 C 1.54894 * 102.77554 * 37.88929 * 17 16 15
19 19 C 1.53875 * 110.03127 * 335.69418 * 15 14 13
20 20 O 1.34597 * 114.12623 * 0.44518 * 14 13 12
21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3
22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2
23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2
24 24 H 1.09007 * 110.94267 * 336.93053 * 12 10 9
25 25 H 1.08997 * 110.94492 * 100.62318 * 12 10 9
26 26 H 1.09004 * 110.01840 * 214.30420 * 15 14 13
27 27 H 1.09000 * 110.48517 * 335.78807 * 16 15 14
28 28 H 1.09004 * 110.48546 * 98.42807 * 16 15 14
29 29 H 1.08994 * 110.72036 * 279.58039 * 17 16 15
30 30 H 1.09000 * 110.76479 * 156.22193 * 17 16 15
31 31 H 1.09005 * 110.48357 * 203.40595 * 18 17 16
32 32 H 1.09000 * 110.48606 * 80.75927 * 18 17 16
33 33 H 1.08999 * 110.03240 * 238.56957 * 19 15 14
34 34 H 1.09002 * 110.03492 * 359.97438 * 19 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0465 1.4001
5 1 3.5467 1.4402 -0.7000
6 1 1.4466 2.6527 -0.7001
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4992 0.0005
10 6 2.2454 -3.6621 0.0005
11 1 2.9501 -3.5722 -0.8261
12 6 1.5095 -5.0239 -0.0405
13 7 2.3363 -5.8432 0.8682
14 6 3.0982 -5.0598 1.5467
15 6 4.0859 -5.5603 2.5690
16 6 5.4676 -5.7635 1.9137
17 6 6.0291 -7.0348 2.5992
18 6 4.7717 -7.9270 2.7487
19 6 3.6437 -6.9351 3.1001
20 8 2.9363 -3.7539 1.2638
21 1 -0.4850 -0.8401 -0.0004
22 1 0.6241 -2.5566 0.8903
23 1 0.6247 -2.5571 -0.8897
24 1 0.4919 -4.9284 0.3383
25 1 1.5110 -5.4373 -1.0491
26 1 4.1637 -4.8496 3.3918
27 1 5.3611 -5.9242 0.8408
28 1 6.1126 -4.9069 2.1098
29 1 6.4493 -6.7929 3.5753
30 1 6.7730 -7.5186 1.9662
31 1 4.9097 -8.6487 3.5539
32 1 4.5525 -8.4374 1.8109
33 1 3.5077 -6.8918 4.1807
34 1 2.7145 -7.2401 2.6188
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260408368.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:15
Heat of formation + Delta-G solvation = -62.124902 kcal
Electronic energy + Delta-G solvation = -15295.386900 eV
Core-core repulsion = 12805.746712 eV
Total energy + Delta-G solvation = -2489.640188 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 223.131 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-42.30212 -38.91088 -35.93483 -34.57291 -32.98563 -30.32342 -29.61122 -27.65638
-25.10290 -23.37684 -22.45339 -21.54589 -20.11515 -19.12611 -17.93859 -17.61561
-16.56474 -15.95568 -15.65487 -15.56784 -15.06501 -14.30723 -14.25184 -14.15982
-13.68078 -13.49603 -12.85339 -12.58997 -12.53085 -12.36842 -12.03742 -11.97058
-11.93478 -11.90261 -11.67235 -11.48641 -11.23925 -10.69776 -10.63580 -10.12216
-8.76514 -6.47327 1.05793 1.49946 1.58935 1.77601 2.23295 2.52001
3.00418 3.10004 3.55327 3.67426 3.71986 3.84406 3.99689 4.19951
4.39353 4.46025 4.50244 4.54852 4.57202 4.60107 4.78988 4.83797
4.94605 4.98311 5.11157 5.15419 5.24585 5.26104 5.41460 5.46439
5.52752 5.83869 6.06850 6.46070 6.67663 7.32357 8.64488
Molecular weight = 223.13amu
Principal moments of inertia in cm(-1)
A = 0.044261 B = 0.006196 C = 0.005687
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 632.465096 B = 4518.289035 C = 4922.136943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.035 4.035
3 Si 1.122 2.878
4 H -0.273 1.273
5 H -0.269 1.269
6 H -0.278 1.278
7 C -0.614 4.614
8 H 0.047 0.953
9 C 0.018 3.982
10 C 0.070 3.930
11 H 0.081 0.919
12 C -0.003 4.003
13 N -0.559 5.559
14 C 0.296 3.704
15 C -0.026 4.026
16 C -0.112 4.112
17 C -0.113 4.113
18 C -0.117 4.117
19 C -0.115 4.115
20 O -0.352 6.352
21 H 0.255 0.745
22 H -0.007 1.007
23 H 0.024 0.976
24 H 0.081 0.919
25 H 0.112 0.888
26 H 0.104 0.896
27 H 0.053 0.947
28 H 0.080 0.920
29 H 0.087 0.913
30 H 0.081 0.919
31 H 0.087 0.913
32 H 0.058 0.942
33 H 0.085 0.915
34 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.357 -13.699 5.232 18.548
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.571 5.571
2 C -0.233 4.233
3 Si 0.942 3.058
4 H -0.199 1.199
5 H -0.194 1.194
6 H -0.203 1.203
7 C -0.651 4.651
8 H 0.066 0.934
9 C -0.019 4.019
10 C 0.013 3.987
11 H 0.099 0.901
12 C -0.132 4.132
13 N -0.295 5.295
14 C 0.071 3.929
15 C -0.046 4.046
16 C -0.151 4.151
17 C -0.151 4.151
18 C -0.155 4.155
19 C -0.153 4.153
20 O -0.256 6.256
21 H 0.065 0.935
22 H 0.012 0.988
23 H 0.042 0.958
24 H 0.099 0.901
25 H 0.130 0.870
26 H 0.122 0.878
27 H 0.072 0.928
28 H 0.099 0.901
29 H 0.105 0.895
30 H 0.099 0.901
31 H 0.106 0.894
32 H 0.077 0.923
33 H 0.103 0.897
34 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 10.942 -12.725 5.165 17.559
hybrid contribution -0.590 -0.669 -0.474 1.010
sum 10.352 -13.394 4.690 17.566
Atomic orbital electron populations
1.70907 1.07835 1.29841 1.48514 1.27464 0.96563 1.06815 0.92425
0.82882 0.74193 0.70858 0.77845 1.19903 1.19365 1.20341 1.22308
0.94485 0.92888 1.55459 0.93421 1.19222 0.93832 0.93193 0.95667
1.24083 0.93976 0.97079 0.83594 0.90085 1.24108 0.98734 0.90148
1.00189 1.74565 1.10731 1.30736 1.13432 1.26401 0.92471 0.79884
0.94153 1.20879 0.91269 0.99004 0.93407 1.22419 0.92896 1.00310
0.99425 1.22509 0.97349 0.93799 1.01397 1.22329 0.93794 0.97403
1.01939 1.22216 1.00123 0.91586 1.01343 1.87077 1.73421 1.26074
1.39015 0.93517 0.98828 0.95829 0.90120 0.86957 0.87828 0.92817
0.90112 0.89459 0.90058 0.89436 0.92302 0.89658 0.91502
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.40 13.65 21.45 0.29 -58.11 16
2 C -0.04 -2.07 5.46 84.65 0.46 -1.61 16
3 Si 1.12 51.09 29.90 68.60 2.05 53.14 16
4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16
6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16
7 C -0.61 -36.12 9.02 25.60 0.23 -35.89 16
8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16
9 C 0.02 0.97 4.00 29.85 0.12 1.08 16
10 C 0.07 3.14 3.66 31.22 0.11 3.25 16
11 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16
12 C 0.00 -0.10 7.70 86.78 0.67 0.57 16
13 N -0.56 -20.68 10.28 -449.28 -4.62 -25.29 16
14 C 0.30 10.86 6.68 88.58 0.59 11.45 16
15 C -0.03 -0.70 3.44 -10.81 -0.04 -0.73 16
16 C -0.11 -2.50 6.36 31.70 0.20 -2.30 16
17 C -0.11 -1.80 6.91 31.91 0.22 -1.57 16
18 C -0.12 -2.03 6.83 31.67 0.22 -1.82 16
19 C -0.11 -2.56 6.36 31.32 0.20 -2.36 16
20 O -0.35 -15.94 10.80 -78.62 -0.85 -16.78 16
21 H 0.26 16.11 7.22 -92.71 -0.67 15.44 16
22 H -0.01 -0.38 8.01 -2.39 -0.02 -0.40 16
23 H 0.02 1.28 8.01 -2.38 -0.02 1.26 16
24 H 0.08 3.15 7.91 -2.38 -0.02 3.13 16
25 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16
26 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16
27 H 0.05 1.37 7.85 -2.39 -0.02 1.35 16
28 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16
29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16
30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16
31 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16
32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
34 H 0.07 1.80 6.71 -2.39 -0.02 1.79 16
Total: -1.00 -68.48 279.11 1.03 -67.45
By element:
Atomic # 1 Polarization: 8.36 SS G_CDS: 1.16 Total: 9.52 kcal
Atomic # 6 Polarization: -32.91 SS G_CDS: 2.99 Total: -29.92 kcal
Atomic # 7 Polarization: -79.08 SS G_CDS: -4.32 Total: -83.40 kcal
Atomic # 8 Polarization: -15.94 SS G_CDS: -0.85 Total: -16.78 kcal
Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.14 kcal
Total: -68.48 1.03 -67.45 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260408368.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.327 kcal
(2) G-P(sol) polarization free energy of solvation -68.479 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.125 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds