Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30600 * 1 3 3 Si 1.86796 * 120.00365 * 2 1 4 4 H 1.48503 * 109.46973 * 90.00039 * 3 2 1 5 5 H 1.48500 * 109.47495 * 210.00203 * 3 2 1 6 6 H 1.48506 * 109.46920 * 330.00219 * 3 2 1 7 7 C 1.40216 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99890 * 14.02223 * 7 2 1 9 9 C 1.41255 * 120.00182 * 194.02079 * 7 2 1 10 10 N 1.30630 * 123.23088 * 188.39867 * 9 7 2 11 11 C 1.47578 * 108.34435 * 180.59348 * 10 9 7 12 12 H 1.08998 * 110.90336 * 256.75517 * 11 10 9 13 13 C 1.53004 * 110.90677 * 133.18957 * 11 10 9 14 14 C 1.52999 * 109.46965 * 181.45616 * 13 11 10 15 15 C 1.53004 * 109.46965 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47094 * 59.99928 * 15 14 13 17 17 C 1.53006 * 109.46810 * 299.99991 * 16 15 14 18 18 C 1.52999 * 109.47483 * 60.00384 * 17 16 15 19 19 C 1.54793 * 102.10624 * 14.98921 * 11 10 9 20 20 O 1.35199 * 123.22160 * 8.10445 * 9 7 2 21 21 H 0.97002 * 120.00431 * 174.73098 * 1 2 3 22 22 H 1.08996 * 109.47021 * 301.45497 * 13 11 10 23 23 H 1.09004 * 109.46940 * 299.99943 * 14 13 11 24 24 H 1.08999 * 109.47631 * 60.00019 * 14 13 11 25 25 H 1.08996 * 109.47021 * 299.99881 * 15 14 13 26 26 H 1.08996 * 109.46833 * 179.97438 * 15 14 13 27 27 H 1.08993 * 109.47292 * 180.02562 * 16 15 14 28 28 H 1.09004 * 109.47214 * 59.99810 * 16 15 14 29 29 H 1.09004 * 109.47084 * 299.99898 * 17 16 15 30 30 H 1.09009 * 109.46639 * 180.02562 * 17 16 15 31 31 H 1.08996 * 109.47031 * 180.02562 * 18 17 16 32 32 H 1.08996 * 109.47132 * 59.99557 * 18 17 16 33 33 H 1.08992 * 111.01777 * 94.39061 * 19 11 10 34 34 H 1.08996 * 111.01432 * 218.28022 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6176 0.0000 4 1 2.4876 2.0463 1.4001 5 1 3.5376 1.4401 -0.7001 6 1 1.4375 2.6526 -0.7000 7 6 2.0070 -1.2143 -0.0005 8 1 1.4911 -2.1356 -0.2276 9 6 3.3880 -1.2328 0.2958 10 7 4.1353 -2.2956 0.1597 11 6 5.5102 -1.9526 0.5720 12 1 6.1530 -1.8120 -0.2970 13 6 6.0833 -3.0215 1.5047 14 6 7.4929 -2.6160 1.9399 15 6 8.0662 -3.6852 2.8720 16 6 8.1254 -5.0251 2.1358 17 6 6.7157 -5.4306 1.7006 18 6 6.1424 -4.3614 0.7684 19 6 5.2994 -0.6172 1.3259 20 8 4.0644 -0.1505 0.7421 21 1 -0.4851 -0.8365 -0.0771 22 1 5.4452 -3.1171 2.3831 23 1 8.1310 -2.5204 1.0613 24 1 7.4508 -1.6612 2.4640 25 1 7.4283 -3.7813 3.7506 26 1 9.0706 -3.3965 3.1817 27 1 8.5334 -5.7870 2.8000 28 1 8.7634 -4.9291 1.2572 29 1 6.0777 -5.5266 2.5792 30 1 6.7578 -6.3855 1.1764 31 1 5.1380 -4.6501 0.4588 32 1 6.7803 -4.2654 -0.1101 33 1 5.1902 -0.7861 2.3971 34 1 6.1129 0.0791 1.1225 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260411164.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = -59.992184 kcal Electronic energy + Delta-G solvation = -15634.597012 eV Core-core repulsion = 13145.049306 eV Total energy + Delta-G solvation = -2489.547706 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.83763 -37.94937 -33.63186 -32.79406 -30.81599 -30.33154 -28.32828 -25.34223 -23.05489 -22.17408 -20.38568 -19.53028 -19.14675 -18.10788 -15.78730 -15.52274 -14.69919 -14.44926 -14.01255 -13.89308 -13.54999 -13.14311 -12.62339 -12.29532 -11.96857 -11.91162 -11.37822 -11.35632 -11.17094 -10.87007 -10.73054 -10.54425 -10.14467 -9.98587 -9.76802 -9.74963 -9.39525 -9.16720 -8.29720 -7.78698 -7.29227 -4.83655 3.17758 3.30371 3.63340 3.86490 4.13893 4.76673 4.88618 4.98648 5.00663 5.23625 5.37658 5.48126 5.66154 5.69421 5.74063 5.79858 5.82862 5.88153 5.95068 6.02023 6.14338 6.20025 6.29031 6.35968 6.42859 6.55911 6.65224 6.67969 6.94193 7.03140 7.40527 7.59584 8.19170 8.44617 8.68931 9.70296 10.07449 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.054333 B = 0.007210 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.215132 B = 3882.412615 C = 4241.759515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.052 3.948 3 Si 1.086 2.914 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.291 1.291 7 C -0.503 4.503 8 H 0.097 0.903 9 C 0.388 3.612 10 N -0.673 5.673 11 C 0.050 3.950 12 H 0.056 0.944 13 C -0.065 4.065 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.100 4.100 19 C 0.022 3.978 20 O -0.367 6.367 21 H 0.286 0.714 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.555 -3.500 4.173 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.170 4.170 3 Si 0.913 3.087 4 H -0.204 1.204 5 H -0.189 1.189 6 H -0.219 1.219 7 C -0.541 4.541 8 H 0.115 0.885 9 C 0.190 3.810 10 N -0.422 5.422 11 C -0.062 4.062 12 H 0.074 0.926 13 C -0.084 4.084 14 C -0.155 4.155 15 C -0.154 4.154 16 C -0.155 4.155 17 C -0.158 4.158 18 C -0.138 4.138 19 C -0.054 4.054 20 O -0.276 6.276 21 H 0.098 0.902 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.287 -2.543 3.997 13.168 hybrid contribution 0.491 -1.117 0.318 1.261 sum 12.778 -3.660 4.315 13.975 Atomic orbital electron populations 1.70492 1.07792 1.33033 1.32603 1.27230 0.95736 1.04590 0.89396 0.83239 0.74742 0.72233 0.78467 1.20406 1.18888 1.21871 1.19882 0.89014 0.97426 1.47785 0.88509 1.22140 0.92946 0.79811 0.86105 1.75563 0.98316 1.25208 1.43093 1.23071 0.96785 0.91204 0.95127 0.92593 1.21033 0.94382 0.95140 0.97823 1.21645 0.96944 0.97897 0.99035 1.21506 1.00162 0.95296 0.98458 1.21531 0.97442 0.96759 0.99780 1.21582 0.95961 0.98513 0.99736 1.21369 1.01728 0.93631 0.97070 1.24342 0.86198 0.97346 0.97557 1.86808 1.32080 1.35040 1.73681 0.90236 0.91873 0.92256 0.92438 0.92261 0.92596 0.92750 0.92317 0.92397 0.92613 0.90512 0.92986 0.91971 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.28 13.64 55.56 0.76 -21.52 16 2 C 0.05 1.42 5.52 -17.33 -0.10 1.33 16 3 Si 1.09 25.48 26.24 -169.99 -4.46 21.02 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.26 -6.18 6.47 56.52 0.37 -5.81 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.50 -14.28 9.85 -37.69 -0.37 -14.65 16 8 H 0.10 2.87 8.06 -52.48 -0.42 2.44 16 9 C 0.39 10.54 7.05 -16.92 -0.12 10.42 16 10 N -0.67 -17.43 10.88 -53.13 -0.58 -18.01 16 11 C 0.05 1.04 3.24 -66.39 -0.22 0.83 16 12 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.06 -1.13 1.87 -90.62 -0.17 -1.29 16 14 C -0.12 -1.63 5.05 -26.73 -0.13 -1.76 16 15 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 16 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 17 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 18 C -0.10 -1.67 5.07 -26.73 -0.14 -1.81 16 19 C 0.02 0.46 6.84 38.10 0.26 0.72 16 20 O -0.37 -9.19 6.40 -17.29 -0.11 -9.30 16 21 H 0.29 7.60 8.72 -40.82 -0.36 7.25 16 22 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.77 7.49 -51.93 -0.39 0.38 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.08 1.49 7.72 -51.93 -0.40 1.09 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.19 7.89 -51.93 -0.41 0.78 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 269.50 15.07 4.06 4.06 Total: -1.00 -28.76 269.50 -7.24 -36.01 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.46 Total: -1.14 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.46 Total: -11.12 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.18 Total: -39.53 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.11 Total: -9.30 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -4.46 Total: 21.02 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.76 -7.24 -36.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260411164.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.984 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds