Wall clock time and date at job start Mon Mar 30 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30600 * 1 3 3 Si 1.86796 * 120.00365 * 2 1 4 4 H 1.48503 * 109.46973 * 90.00039 * 3 2 1 5 5 H 1.48500 * 109.47495 * 210.00203 * 3 2 1 6 6 H 1.48506 * 109.46920 * 330.00219 * 3 2 1 7 7 C 1.40216 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99890 * 14.02223 * 7 2 1 9 9 C 1.41255 * 120.00182 * 194.02079 * 7 2 1 10 10 N 1.30630 * 123.23088 * 188.39867 * 9 7 2 11 11 C 1.47578 * 108.34435 * 180.59348 * 10 9 7 12 12 H 1.08998 * 110.90336 * 256.75517 * 11 10 9 13 13 C 1.53004 * 110.90677 * 133.18957 * 11 10 9 14 14 C 1.52999 * 109.46965 * 181.45616 * 13 11 10 15 15 C 1.53004 * 109.46965 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47094 * 59.99928 * 15 14 13 17 17 C 1.53006 * 109.46810 * 299.99991 * 16 15 14 18 18 C 1.52999 * 109.47483 * 60.00384 * 17 16 15 19 19 C 1.54793 * 102.10624 * 14.98921 * 11 10 9 20 20 O 1.35199 * 123.22160 * 8.10445 * 9 7 2 21 21 H 0.97002 * 120.00431 * 174.73098 * 1 2 3 22 22 H 1.08996 * 109.47021 * 301.45497 * 13 11 10 23 23 H 1.09004 * 109.46940 * 299.99943 * 14 13 11 24 24 H 1.08999 * 109.47631 * 60.00019 * 14 13 11 25 25 H 1.08996 * 109.47021 * 299.99881 * 15 14 13 26 26 H 1.08996 * 109.46833 * 179.97438 * 15 14 13 27 27 H 1.08993 * 109.47292 * 180.02562 * 16 15 14 28 28 H 1.09004 * 109.47214 * 59.99810 * 16 15 14 29 29 H 1.09004 * 109.47084 * 299.99898 * 17 16 15 30 30 H 1.09009 * 109.46639 * 180.02562 * 17 16 15 31 31 H 1.08996 * 109.47031 * 180.02562 * 18 17 16 32 32 H 1.08996 * 109.47132 * 59.99557 * 18 17 16 33 33 H 1.08992 * 111.01777 * 94.39061 * 19 11 10 34 34 H 1.08996 * 111.01432 * 218.28022 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6176 0.0000 4 1 2.4876 2.0463 1.4001 5 1 3.5376 1.4401 -0.7001 6 1 1.4375 2.6526 -0.7000 7 6 2.0070 -1.2143 -0.0005 8 1 1.4911 -2.1356 -0.2276 9 6 3.3880 -1.2328 0.2958 10 7 4.1353 -2.2956 0.1597 11 6 5.5102 -1.9526 0.5720 12 1 6.1530 -1.8120 -0.2970 13 6 6.0833 -3.0215 1.5047 14 6 7.4929 -2.6160 1.9399 15 6 8.0662 -3.6852 2.8720 16 6 8.1254 -5.0251 2.1358 17 6 6.7157 -5.4306 1.7006 18 6 6.1424 -4.3614 0.7684 19 6 5.2994 -0.6172 1.3259 20 8 4.0644 -0.1505 0.7421 21 1 -0.4851 -0.8365 -0.0771 22 1 5.4452 -3.1171 2.3831 23 1 8.1310 -2.5204 1.0613 24 1 7.4508 -1.6612 2.4640 25 1 7.4283 -3.7813 3.7506 26 1 9.0706 -3.3965 3.1817 27 1 8.5334 -5.7870 2.8000 28 1 8.7634 -4.9291 1.2572 29 1 6.0777 -5.5266 2.5792 30 1 6.7578 -6.3855 1.1764 31 1 5.1380 -4.6501 0.4588 32 1 6.7803 -4.2654 -0.1101 33 1 5.1902 -0.7861 2.3971 34 1 6.1129 0.0791 1.1225 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260411164.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:55 Heat of formation + Delta-G solvation = -80.273110 kcal Electronic energy + Delta-G solvation = -15635.476459 eV Core-core repulsion = 13145.049306 eV Total energy + Delta-G solvation = -2490.427153 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.64930 -39.22769 -35.67610 -34.42081 -32.51914 -31.56218 -29.93786 -27.24050 -24.45638 -23.36133 -21.97634 -21.09483 -20.65718 -20.12879 -17.50061 -17.22170 -16.42155 -15.92949 -15.41797 -15.12095 -15.00945 -14.66514 -14.40570 -13.88818 -13.55873 -13.19694 -13.02654 -12.86397 -12.57373 -12.30823 -11.99451 -11.93046 -11.92475 -11.46171 -11.35057 -11.18032 -10.98611 -10.82530 -10.21561 -9.72819 -9.43384 -6.99842 1.25676 1.41936 1.79533 1.91978 2.24198 2.88096 3.23294 3.68434 3.79649 3.90735 4.06515 4.15958 4.29780 4.39893 4.43149 4.48133 4.60561 4.65997 4.72993 4.80473 4.89250 4.90630 5.10893 5.19091 5.25846 5.30817 5.32469 5.39108 5.42206 5.54458 5.60672 5.62477 5.99340 6.36135 6.57534 7.69279 7.93867 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.054333 B = 0.007210 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.215132 B = 3882.412615 C = 4241.759515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.024 3.976 3 Si 1.124 2.876 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.381 3.619 10 N -0.694 5.694 11 C 0.043 3.957 12 H 0.060 0.940 13 C -0.059 4.059 14 C -0.111 4.111 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.099 4.099 19 C 0.017 3.983 20 O -0.378 6.378 21 H 0.281 0.719 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.414 -2.819 5.180 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.193 4.193 3 Si 0.945 3.055 4 H -0.192 1.192 5 H -0.190 1.190 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.180 3.820 10 N -0.442 5.442 11 C -0.068 4.068 12 H 0.077 0.923 13 C -0.078 4.078 14 C -0.149 4.149 15 C -0.152 4.152 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.137 4.137 19 C -0.059 4.059 20 O -0.287 6.287 21 H 0.092 0.908 22 H 0.062 0.938 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.144 -1.889 5.011 16.063 hybrid contribution -0.334 -1.460 -0.014 1.498 sum 14.810 -3.348 4.998 15.985 Atomic orbital electron populations 1.70541 1.08147 1.32739 1.33819 1.28342 0.95881 1.06771 0.88331 0.82801 0.73842 0.69621 0.79233 1.19170 1.19021 1.20029 1.19842 0.90353 0.97000 1.50075 0.91637 1.21997 0.92786 0.80792 0.86413 1.75510 1.01167 1.25590 1.41957 1.23271 0.94302 0.93035 0.96219 0.92252 1.20979 0.96370 0.94309 0.96142 1.21607 0.94240 0.99101 0.99960 1.21514 1.01322 0.94609 0.97765 1.21527 0.95834 0.97294 1.00501 1.21544 0.97215 0.97838 0.98787 1.21317 0.99812 0.94566 0.97997 1.24688 0.85504 0.97679 0.97992 1.86770 1.33555 1.34498 1.73857 0.90839 0.93760 0.91419 0.91431 0.92528 0.90078 0.90647 0.91626 0.92972 0.91563 0.94407 0.92751 0.90670 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.12 13.64 21.87 0.30 -45.82 16 2 C 0.02 1.34 5.52 85.36 0.47 1.81 16 3 Si 1.12 50.77 26.24 68.60 1.80 52.57 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.26 -11.89 6.47 99.48 0.64 -11.25 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.53 -31.46 9.85 23.49 0.23 -31.23 16 8 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 9 C 0.38 20.96 7.05 85.61 0.60 21.57 16 10 N -0.69 -36.54 10.88 -435.96 -4.74 -41.28 16 11 C 0.04 1.74 3.24 45.40 0.15 1.89 16 12 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 13 C -0.06 -1.97 1.87 -10.79 -0.02 -1.99 16 14 C -0.11 -2.72 5.05 30.60 0.15 -2.57 16 15 C -0.11 -2.31 5.92 30.60 0.18 -2.13 16 16 C -0.11 -2.28 5.92 30.60 0.18 -2.10 16 17 C -0.12 -2.95 5.92 30.60 0.18 -2.77 16 18 C -0.10 -3.26 5.07 30.59 0.16 -3.10 16 19 C 0.02 0.66 6.84 72.59 0.50 1.15 16 20 O -0.38 -18.48 6.40 -84.79 -0.54 -19.02 16 21 H 0.28 15.49 8.72 -92.71 -0.81 14.68 16 22 H 0.04 1.64 8.11 -2.39 -0.02 1.62 16 23 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.07 1.53 7.49 -2.39 -0.02 1.51 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.04 1.50 7.72 -2.39 -0.02 1.49 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 33 H 0.08 2.69 7.89 -2.39 -0.02 2.67 16 34 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 Total: -1.00 -63.22 269.50 0.55 -62.67 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.96 Total: 10.34 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 2.78 Total: -19.46 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -4.45 Total: -87.10 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.54 Total: -19.02 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 1.80 Total: 52.57 kcal Total: -63.22 0.55 -62.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260411164.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.602 kcal (2) G-P(sol) polarization free energy of solvation -63.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds