Wall clock time and date at job start Mon Mar 30 2020 02:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30594 * 1 3 3 Si 1.86803 * 119.99984 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99657 * 3 2 1 5 5 H 1.48497 * 109.46778 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99934 * 3 2 1 7 7 C 1.40225 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.41251 * 119.99672 * 0.27842 * 7 2 1 10 10 N 1.30633 * 123.22457 * 179.44914 * 9 7 2 11 11 C 1.47589 * 108.34081 * 179.22373 * 10 9 7 12 12 H 1.08996 * 110.72492 * 103.53534 * 11 10 9 13 13 C 1.53000 * 111.06796 * 227.08938 * 11 10 9 14 14 C 1.53003 * 109.46977 * 52.87346 * 13 11 10 15 15 C 1.53002 * 109.47012 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47386 * 60.00093 * 15 14 13 17 17 C 1.52998 * 109.46831 * 300.00258 * 16 15 14 18 18 C 1.52995 * 109.46879 * 292.87906 * 13 11 10 19 19 C 1.54792 * 102.15674 * 345.38962 * 11 10 9 20 20 O 1.35192 * 123.22880 * 359.75181 * 9 7 2 21 21 H 0.96996 * 120.00284 * 0.02562 * 1 2 3 22 22 H 1.08991 * 109.47297 * 172.87600 * 13 11 10 23 23 H 1.09005 * 109.47390 * 300.00294 * 14 13 11 24 24 H 1.09003 * 109.47399 * 60.00365 * 14 13 11 25 25 H 1.09005 * 109.46968 * 300.00166 * 15 14 13 26 26 H 1.09005 * 109.47083 * 179.97438 * 15 14 13 27 27 H 1.08993 * 109.47292 * 179.97438 * 16 15 14 28 28 H 1.09006 * 109.47148 * 59.99562 * 16 15 14 29 29 H 1.08998 * 109.47245 * 299.99368 * 17 16 15 30 30 H 1.09003 * 109.47261 * 179.97438 * 17 16 15 31 31 H 1.09004 * 109.47256 * 299.99729 * 18 13 11 32 32 H 1.08999 * 109.47722 * 59.99891 * 18 13 11 33 33 H 1.08997 * 111.01991 * 265.39085 * 19 11 10 34 34 H 1.09004 * 111.04608 * 141.52575 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 3.0937 1.6964 -1.2124 5 1 1.2749 2.7464 0.0006 6 1 3.0937 1.6964 1.2125 7 6 2.0071 -1.2144 0.0005 8 1 3.0871 -1.2143 0.0001 9 6 1.3008 -2.4376 -0.0049 10 7 1.8893 -3.6038 -0.0152 11 6 0.8479 -4.6496 0.0010 12 1 0.7288 -5.0906 -0.9886 13 6 1.1655 -5.7260 1.0409 14 6 1.4152 -5.0657 2.3984 15 6 1.7334 -6.1420 3.4382 16 6 2.9833 -6.9128 3.0084 17 6 2.7336 -7.5730 1.6509 18 6 2.4152 -6.4971 0.6114 19 6 -0.4133 -3.8476 0.4037 20 8 -0.0490 -2.5137 -0.0058 21 1 -0.4850 0.8400 -0.0004 22 1 0.3237 -6.4137 1.1207 23 1 2.2571 -4.3779 2.3185 24 1 0.5249 -4.5163 2.7045 25 1 0.8918 -6.8301 3.5181 26 1 1.9118 -5.6716 4.4052 27 1 3.2102 -7.6792 3.7494 28 1 3.8249 -6.2247 2.9284 29 1 1.8921 -8.2611 1.7309 30 1 3.6241 -8.1217 1.3445 31 1 2.2374 -6.9675 -0.3557 32 1 3.2571 -5.8094 0.5316 33 1 -0.5793 -3.8946 1.4799 34 1 -1.2903 -4.1979 -0.1406 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260411169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:58 Heat of formation + Delta-G solvation = -68.594361 kcal Electronic energy + Delta-G solvation = -15764.317144 eV Core-core repulsion = 13274.396420 eV Total energy + Delta-G solvation = -2489.920724 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.39424 -39.02692 -35.47543 -34.11178 -32.18848 -31.60635 -29.58907 -27.50794 -24.51492 -23.30526 -22.12200 -21.32200 -20.13737 -19.13661 -17.14484 -16.98396 -16.40884 -15.80649 -15.37577 -14.99335 -14.88669 -14.66177 -14.13380 -13.84206 -13.19508 -12.99664 -12.93742 -12.76451 -12.59519 -12.40947 -12.05391 -12.04925 -11.87588 -11.76496 -11.29683 -11.07219 -10.92453 -10.74141 -10.05006 -9.46331 -8.66234 -6.78107 1.34758 1.41000 1.55337 2.03101 2.22538 3.15201 3.37777 3.76967 3.86135 3.95026 4.05889 4.27779 4.37918 4.46830 4.51303 4.56964 4.66257 4.71707 4.73448 4.78036 4.94837 5.10214 5.17544 5.19702 5.20825 5.36158 5.38236 5.42226 5.45705 5.55054 5.77133 5.86297 6.25247 6.65295 6.85659 7.97474 8.36810 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.042511 B = 0.007339 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.497866 B = 3814.359335 C = 4019.550418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.037 3.963 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.386 3.614 10 N -0.698 5.698 11 C 0.043 3.957 12 H 0.045 0.955 13 C -0.057 4.057 14 C -0.105 4.105 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.100 4.100 19 C 0.006 3.994 20 O -0.343 6.343 21 H 0.290 0.710 22 H 0.077 0.923 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -8.223 4.871 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.183 4.183 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.527 4.527 8 H 0.113 0.887 9 C 0.187 3.813 10 N -0.449 5.449 11 C -0.069 4.069 12 H 0.063 0.937 13 C -0.075 4.075 14 C -0.143 4.143 15 C -0.149 4.149 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.138 4.138 19 C -0.071 4.071 20 O -0.248 6.248 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.399 -8.422 4.796 9.792 hybrid contribution -0.749 0.877 -0.275 1.186 sum 0.650 -7.544 4.521 8.819 Atomic orbital electron populations 1.69808 1.09122 1.30930 1.34002 1.27043 0.95756 1.05083 0.90371 0.84979 0.78428 0.74253 0.80319 1.18118 1.18677 1.18066 1.19123 0.94629 0.87776 1.51159 0.88667 1.22246 0.78917 0.94877 0.85255 1.75469 1.26259 0.96874 1.46307 1.23190 0.89970 0.96410 0.97309 0.93695 1.20931 0.98276 0.94846 0.93491 1.21461 0.99908 0.97873 0.95073 1.21515 0.98748 0.97182 0.97409 1.21514 0.97201 0.99265 0.97342 1.21509 1.01919 0.97003 0.94370 1.21352 0.97180 0.96986 0.98261 1.24591 0.99729 0.82841 0.99985 1.87275 1.23702 1.31456 1.82410 0.89898 0.90464 0.94373 0.94270 0.90796 0.91975 0.90047 0.93644 0.90859 0.91189 0.92822 0.93918 0.91573 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.37 11.82 21.87 0.26 -44.11 16 2 C 0.04 1.92 5.50 85.36 0.47 2.39 16 3 Si 1.00 38.95 29.56 68.60 2.03 40.98 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 6 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 7 C -0.49 -28.16 9.47 23.49 0.22 -27.94 16 8 H 0.10 5.35 7.85 -2.91 -0.02 5.32 16 9 C 0.39 22.61 7.37 85.61 0.63 23.24 16 10 N -0.70 -38.03 10.19 -435.95 -4.44 -42.47 16 11 C 0.04 1.93 3.47 45.39 0.16 2.09 16 12 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 13 C -0.06 -2.05 2.14 -10.79 -0.02 -2.07 16 14 C -0.11 -3.89 4.75 30.60 0.15 -3.74 16 15 C -0.11 -3.05 5.92 30.60 0.18 -2.87 16 16 C -0.12 -2.92 5.92 30.59 0.18 -2.74 16 17 C -0.11 -2.78 5.92 30.58 0.18 -2.60 16 18 C -0.10 -3.34 5.12 30.58 0.16 -3.19 16 19 C 0.01 0.27 7.52 72.59 0.55 0.82 16 20 O -0.34 -19.64 9.19 -84.72 -0.78 -20.42 16 21 H 0.29 14.18 8.29 -92.71 -0.77 13.41 16 22 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.04 1.69 7.51 -2.38 -0.02 1.67 16 24 H 0.04 1.51 6.17 -2.39 -0.01 1.49 16 25 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.04 1.70 7.90 -2.39 -0.02 1.68 16 33 H 0.07 2.89 5.91 -2.39 -0.01 2.87 16 34 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 Total: -1.00 -64.56 270.23 0.98 -63.58 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 1.07 Total: 19.06 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 2.85 Total: -16.61 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -4.18 Total: -86.58 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.78 Total: -20.42 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -64.56 0.98 -63.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260411169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.015 kcal (2) G-P(sol) polarization free energy of solvation -64.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds