Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00057 * 2 1 4 4 H 1.48494 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47174 * 300.00342 * 3 2 1 6 6 H 1.48505 * 109.46918 * 59.99633 * 3 2 1 7 7 C 1.37878 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99843 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00145 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47012 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.83432 * 308.72469 * 10 9 7 12 12 C 1.54857 * 110.94442 * 185.00210 * 10 9 7 13 13 O 1.44274 * 101.19335 * 218.60384 * 12 10 9 14 14 C 1.34592 * 107.67030 * 24.64595 * 13 12 10 15 15 C 1.50692 * 122.94212 * 162.80427 * 14 13 12 16 16 C 1.54269 * 110.03164 * 202.90333 * 15 14 13 17 17 C 1.54968 * 104.16181 * 217.13168 * 16 15 14 18 18 C 1.54896 * 102.77460 * 37.88985 * 17 16 15 19 19 C 1.53871 * 110.03406 * 85.68480 * 15 14 13 20 20 N 1.28642 * 114.12058 * 342.79932 * 14 13 12 21 21 H 0.96996 * 120.00566 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47134 * 60.00803 * 9 7 2 23 23 H 1.08993 * 109.47930 * 300.00400 * 9 7 2 24 24 H 1.08992 * 111.07494 * 336.58850 * 12 10 9 25 25 H 1.09000 * 111.07496 * 100.62390 * 12 10 9 26 26 H 1.09001 * 110.01598 * 324.28999 * 15 14 13 27 27 H 1.08995 * 110.49107 * 335.78378 * 16 15 14 28 28 H 1.09005 * 110.48795 * 98.42944 * 16 15 14 29 29 H 1.09000 * 110.72226 * 279.57795 * 17 16 15 30 30 H 1.08996 * 110.76417 * 156.22335 * 17 16 15 31 31 H 1.09000 * 110.48715 * 203.40885 * 18 17 16 32 32 H 1.09000 * 110.48670 * 80.76101 * 18 17 16 33 33 H 1.08997 * 110.03516 * 238.57029 * 19 15 14 34 34 H 1.09000 * 110.03219 * 0.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9816 -3.5425 -0.7953 12 6 1.5100 -5.0190 -0.1266 13 8 2.2891 -5.8436 0.7647 14 6 2.8780 -5.0318 1.6623 15 6 3.4570 -5.5296 2.9614 16 6 3.5261 -4.3776 3.9851 17 6 4.8467 -4.6329 4.7547 18 6 5.7994 -5.1374 3.6424 19 6 4.9016 -6.0129 2.7438 20 7 2.9033 -3.7937 1.3141 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8895 24 1 0.4781 -4.9389 0.2149 25 1 1.5547 -5.3956 -1.1486 26 1 2.8466 -6.3425 3.3548 27 1 3.5623 -3.4152 3.4746 28 1 2.6742 -4.4186 4.6638 29 1 4.7061 -5.3974 5.5189 30 1 5.2221 -3.7093 5.1952 31 1 6.6056 -5.7324 4.0715 32 1 6.2031 -4.2980 3.0762 33 1 4.9925 -7.0601 3.0323 34 1 5.1840 -5.8870 1.6986 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260429684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = -33.911870 kcal Electronic energy + Delta-G solvation = -15375.796130 eV Core-core repulsion = 12887.379351 eV Total energy + Delta-G solvation = -2488.416779 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.65228 -37.75150 -34.01040 -32.43909 -31.09991 -28.64347 -28.33276 -26.68197 -23.25709 -21.74178 -20.75252 -19.99669 -18.83934 -16.89772 -16.12845 -15.69393 -15.35081 -14.70131 -14.56659 -14.10744 -13.25236 -12.91979 -12.67556 -12.02161 -11.71570 -11.52533 -11.32865 -11.06807 -11.04103 -10.93926 -10.86842 -10.65405 -10.50024 -10.48429 -10.30684 -9.61287 -9.42321 -9.01826 -8.36981 -8.33778 -5.97325 -3.96982 2.75351 3.34263 3.41404 3.47387 3.70988 4.49012 4.53436 4.72443 4.86714 5.07138 5.36245 5.40056 5.47892 5.53919 5.61182 5.62552 5.69576 5.77013 5.86838 5.95094 5.98876 6.12695 6.21945 6.36154 6.36609 6.40413 6.64911 6.72206 7.05996 7.53291 7.69833 8.00407 8.37245 8.47499 9.07376 9.65563 11.14698 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.007631 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.387451 B = 3668.560942 C = 4332.843298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.040 3.960 10 C 0.030 3.970 11 H 0.087 0.913 12 C 0.018 3.982 13 O -0.360 6.360 14 C 0.266 3.734 15 C -0.013 4.013 16 C -0.119 4.119 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.111 4.111 20 N -0.490 5.490 21 H 0.259 0.741 22 H 0.025 0.975 23 H 0.021 0.979 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.425 -11.853 6.187 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.003 3.997 10 C -0.079 4.079 11 H 0.105 0.895 12 C -0.059 4.059 13 O -0.265 6.265 14 C 0.037 3.963 15 C -0.033 4.033 16 C -0.157 4.157 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.150 4.150 20 N -0.222 5.222 21 H 0.069 0.931 22 H 0.043 0.957 23 H 0.040 0.960 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.528 -11.090 6.340 14.828 hybrid contribution -0.146 0.437 -0.666 0.810 sum 7.381 -10.653 5.674 14.148 Atomic orbital electron populations 1.69964 1.06040 1.26459 1.51646 1.25001 0.94837 0.99256 0.95579 0.86503 0.80194 0.83701 0.77433 1.19708 1.21159 1.21073 1.21129 0.93200 0.90231 1.49287 0.92283 1.19044 0.92566 0.90594 0.97487 1.23932 0.97213 0.95344 0.91438 0.89504 1.24754 0.95858 0.91455 0.93813 1.86843 1.61179 1.36727 1.41785 1.25461 0.92292 0.86682 0.91817 1.20425 0.96168 0.98787 0.87872 1.22515 0.97285 0.99626 0.96238 1.22492 0.95450 1.00822 0.97275 1.22355 0.97487 0.99416 0.96779 1.22126 0.92810 0.99343 1.00723 1.74716 1.20112 1.15106 1.12269 0.93131 0.95706 0.96049 0.90313 0.88319 0.89221 0.88197 0.91515 0.91792 0.91323 0.91839 0.91226 0.91274 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.50 -14.51 9.04 -34.44 -0.31 -14.82 16 8 H 0.06 1.72 7.74 -52.48 -0.41 1.31 16 9 C 0.04 1.06 4.64 -27.88 -0.13 0.93 16 10 C 0.03 0.66 3.66 -66.35 -0.24 0.42 16 11 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 12 C 0.02 0.33 7.74 38.14 0.30 0.62 16 13 O -0.36 -6.64 11.17 -15.55 -0.17 -6.82 16 14 C 0.27 4.89 6.61 -13.62 -0.09 4.80 16 15 C -0.01 -0.18 3.44 -90.66 -0.31 -0.50 16 16 C -0.12 -1.67 6.32 -25.03 -0.16 -1.83 16 17 C -0.12 -1.37 6.91 -24.69 -0.17 -1.54 16 18 C -0.12 -1.37 6.83 -25.06 -0.17 -1.54 16 19 C -0.11 -1.36 6.45 -25.61 -0.17 -1.52 16 20 N -0.49 -10.62 9.89 -50.61 -0.50 -11.12 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 25 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.10 1.74 6.82 -51.93 -0.35 1.39 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.91 7.67 -51.93 -0.40 0.52 16 LS Contribution 280.30 15.07 4.22 4.22 Total: -1.00 -31.66 280.30 -7.64 -39.30 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.35 Total: -2.64 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.55 Total: -13.52 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.24 Total: -37.82 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.17 Total: -6.82 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.66 -7.64 -39.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.385 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds