Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00057 * 2 1 4 4 H 1.48494 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47174 * 300.00342 * 3 2 1 6 6 H 1.48505 * 109.46918 * 59.99633 * 3 2 1 7 7 C 1.37878 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99843 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00145 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47012 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.83432 * 308.72469 * 10 9 7 12 12 C 1.54857 * 110.94442 * 185.00210 * 10 9 7 13 13 O 1.44274 * 101.19335 * 218.60384 * 12 10 9 14 14 C 1.34592 * 107.67030 * 24.64595 * 13 12 10 15 15 C 1.50692 * 122.94212 * 162.80427 * 14 13 12 16 16 C 1.54269 * 110.03164 * 202.90333 * 15 14 13 17 17 C 1.54968 * 104.16181 * 217.13168 * 16 15 14 18 18 C 1.54896 * 102.77460 * 37.88985 * 17 16 15 19 19 C 1.53871 * 110.03406 * 85.68480 * 15 14 13 20 20 N 1.28642 * 114.12058 * 342.79932 * 14 13 12 21 21 H 0.96996 * 120.00566 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47134 * 60.00803 * 9 7 2 23 23 H 1.08993 * 109.47930 * 300.00400 * 9 7 2 24 24 H 1.08992 * 111.07494 * 336.58850 * 12 10 9 25 25 H 1.09000 * 111.07496 * 100.62390 * 12 10 9 26 26 H 1.09001 * 110.01598 * 324.28999 * 15 14 13 27 27 H 1.08995 * 110.49107 * 335.78378 * 16 15 14 28 28 H 1.09005 * 110.48795 * 98.42944 * 16 15 14 29 29 H 1.09000 * 110.72226 * 279.57795 * 17 16 15 30 30 H 1.08996 * 110.76417 * 156.22335 * 17 16 15 31 31 H 1.09000 * 110.48715 * 203.40885 * 18 17 16 32 32 H 1.09000 * 110.48670 * 80.76101 * 18 17 16 33 33 H 1.08997 * 110.03516 * 238.57029 * 19 15 14 34 34 H 1.09000 * 110.03219 * 0.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9816 -3.5425 -0.7953 12 6 1.5100 -5.0190 -0.1266 13 8 2.2891 -5.8436 0.7647 14 6 2.8780 -5.0318 1.6623 15 6 3.4570 -5.5296 2.9614 16 6 3.5261 -4.3776 3.9851 17 6 4.8467 -4.6329 4.7547 18 6 5.7994 -5.1374 3.6424 19 6 4.9016 -6.0129 2.7438 20 7 2.9033 -3.7937 1.3141 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8895 24 1 0.4781 -4.9389 0.2149 25 1 1.5547 -5.3956 -1.1486 26 1 2.8466 -6.3425 3.3548 27 1 3.5623 -3.4152 3.4746 28 1 2.6742 -4.4186 4.6638 29 1 4.7061 -5.3974 5.5189 30 1 5.2221 -3.7093 5.1952 31 1 6.6056 -5.7324 4.0715 32 1 6.2031 -4.2980 3.0762 33 1 4.9925 -7.0601 3.0323 34 1 5.1840 -5.8870 1.6986 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260429684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = -56.060834 kcal Electronic energy + Delta-G solvation = -15376.756581 eV Core-core repulsion = 12887.379351 eV Total energy + Delta-G solvation = -2489.377230 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.17323 -38.81158 -35.94414 -34.33226 -32.68746 -29.98434 -29.52180 -28.36497 -25.27861 -23.05412 -22.22703 -21.24083 -20.14777 -18.60909 -18.07927 -17.19605 -16.52346 -16.40197 -16.04892 -15.56740 -14.68212 -14.35998 -14.16508 -13.65458 -13.53552 -13.32239 -13.03871 -12.57567 -12.46148 -12.32953 -12.06154 -11.96863 -11.86717 -11.70074 -11.63001 -11.37125 -11.29498 -10.84868 -10.59189 -9.99334 -8.22972 -6.30873 1.26547 1.35998 1.36911 1.50755 2.30408 2.38983 3.07863 3.20556 3.69006 3.73770 3.81177 4.00553 4.06904 4.38167 4.46661 4.52574 4.60234 4.62528 4.64168 4.75390 4.87191 4.92164 5.01146 5.11740 5.26017 5.31325 5.35961 5.41878 5.46905 5.56727 5.67659 5.73718 6.20322 6.79589 6.90037 7.36221 8.89546 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.007631 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.387451 B = 3668.560942 C = 4332.843298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.519 4.519 8 H 0.051 0.949 9 C 0.050 3.950 10 C 0.029 3.971 11 H 0.081 0.919 12 C 0.026 3.974 13 O -0.356 6.356 14 C 0.280 3.720 15 C -0.017 4.017 16 C -0.123 4.123 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.107 4.107 20 N -0.538 5.538 21 H 0.264 0.736 22 H 0.011 0.989 23 H -0.011 1.011 24 H 0.079 0.921 25 H 0.132 0.868 26 H 0.116 0.884 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.691 -13.061 7.116 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.013 3.987 10 C -0.081 4.081 11 H 0.099 0.901 12 C -0.051 4.051 13 O -0.261 6.261 14 C 0.053 3.947 15 C -0.036 4.036 16 C -0.161 4.161 17 C -0.151 4.151 18 C -0.159 4.159 19 C -0.145 4.145 20 N -0.271 5.271 21 H 0.073 0.927 22 H 0.029 0.971 23 H 0.007 0.993 24 H 0.097 0.903 25 H 0.150 0.850 26 H 0.134 0.866 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.798 -12.316 7.267 16.790 hybrid contribution -0.568 0.763 -0.934 1.333 sum 8.230 -11.552 6.333 15.534 Atomic orbital electron populations 1.70074 1.07567 1.27690 1.52235 1.25897 0.95781 1.03096 0.94954 0.85414 0.78847 0.78951 0.77930 1.19233 1.19870 1.20382 1.21415 0.93017 0.91806 1.49514 0.93110 1.18813 0.92821 0.91975 0.95093 1.23663 0.96506 0.95688 0.92200 0.90143 1.24749 0.95282 0.89417 0.95633 1.86854 1.60974 1.36510 1.41763 1.26295 0.90064 0.85943 0.92436 1.20784 0.97844 0.99425 0.85592 1.22491 0.99530 0.97614 0.96437 1.22484 0.93381 1.01802 0.97464 1.22364 0.98087 0.98996 0.96437 1.22148 0.91144 1.01270 0.99977 1.74739 1.22748 1.17137 1.12479 0.92734 0.97095 0.99260 0.90301 0.85030 0.86598 0.92287 0.90850 0.89023 0.91250 0.88975 0.93274 0.88100 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.96 46.32 29.54 68.60 2.03 48.34 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.52 -31.10 9.04 25.60 0.23 -30.87 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.05 2.76 4.64 29.85 0.14 2.90 16 10 C 0.03 1.31 3.66 45.42 0.17 1.47 16 11 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 12 C 0.03 0.93 7.74 72.62 0.56 1.49 16 13 O -0.36 -12.65 11.17 -78.57 -0.88 -13.53 16 14 C 0.28 10.16 6.61 88.57 0.59 10.74 16 15 C -0.02 -0.45 3.44 -10.82 -0.04 -0.49 16 16 C -0.12 -3.35 6.32 31.70 0.20 -3.15 16 17 C -0.11 -2.27 6.91 31.92 0.22 -2.05 16 18 C -0.12 -2.42 6.83 31.67 0.22 -2.20 16 19 C -0.11 -2.32 6.45 31.32 0.20 -2.12 16 20 N -0.54 -23.90 9.89 -429.27 -4.25 -28.14 16 21 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 22 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 23 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 24 H 0.08 2.85 7.92 -2.39 -0.02 2.84 16 25 H 0.13 3.86 8.14 -2.39 -0.02 3.84 16 26 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.06 2.12 6.82 -2.39 -0.02 2.10 16 28 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.26 7.67 -2.39 -0.02 1.24 16 Total: -1.00 -69.96 280.30 1.20 -68.76 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.06 Total: 6.19 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 2.95 Total: -23.82 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -3.96 Total: -85.95 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.88 Total: -13.53 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -69.96 1.20 -68.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.703 kcal (2) G-P(sol) polarization free energy of solvation -69.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds