Wall clock time and date at job start Mon Mar 30 2020 03:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.36340 * 125.89284 * 2 1 4 4 H 0.97008 * 125.63330 * 0.03082 * 3 2 1 5 5 C 1.36343 * 108.73200 * 180.26152 * 3 2 1 6 6 C 1.50697 * 125.89506 * 179.79510 * 5 3 2 7 7 H 1.09005 * 109.47029 * 144.96960 * 6 5 3 8 8 C 1.52994 * 109.47228 * 264.97392 * 6 5 3 9 9 O 1.42907 * 109.46803 * 24.97556 * 6 5 3 10 10 C 1.34855 * 108.21301 * 359.77108 * 5 3 2 11 11 C 1.50700 * 126.28619 * 179.97438 * 10 5 3 12 12 C 1.34852 * 125.89236 * 179.87021 * 2 1 3 13 13 C 1.50700 * 126.28755 * 0.02562 * 12 2 1 14 14 C 1.50702 * 109.46869 * 269.68527 * 13 12 2 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 H 1.08997 * 109.46702 * 270.13284 * 1 2 3 23 23 H 1.09000 * 109.47318 * 30.12858 * 1 2 3 24 24 H 1.09004 * 109.47166 * 150.13069 * 1 2 3 25 25 H 1.09005 * 109.47468 * 59.99836 * 8 6 5 26 26 H 1.09004 * 109.47263 * 179.97438 * 8 6 5 27 27 H 1.08996 * 109.47196 * 300.00211 * 8 6 5 28 28 H 0.96703 * 113.99493 * 299.99480 * 9 6 5 29 29 H 1.08992 * 109.47314 * 270.02560 * 11 10 5 30 30 H 1.08998 * 109.47033 * 30.03319 * 11 10 5 31 31 H 1.09001 * 109.46750 * 150.03000 * 11 10 5 32 32 H 1.09004 * 109.47210 * 149.68820 * 13 12 2 33 33 H 1.08994 * 109.47551 * 29.68472 * 13 12 2 34 34 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3063 1.1045 0.0000 4 1 1.9989 2.0246 0.0004 5 6 3.6091 0.7022 -0.0059 6 6 4.8134 1.6080 -0.0123 7 1 5.6124 1.1542 0.5742 8 6 5.2902 1.8125 -1.4516 9 8 4.4627 2.8708 0.5574 10 6 3.6338 -0.6461 -0.0045 11 6 4.8648 -1.5155 -0.0100 12 6 2.2976 -1.0925 0.0025 13 6 1.8364 -2.5272 0.0052 14 6 1.6896 -3.0049 1.4269 15 1 1.9080 -2.3363 2.2466 16 6 1.2705 -4.2936 1.6814 17 7 1.0042 -5.1076 0.6833 18 14 1.0812 -4.8833 3.4437 19 1 0.0827 -4.0364 4.1445 20 1 0.6221 -6.2956 3.4464 21 1 2.3886 -4.7870 4.1412 22 1 -0.3632 0.0024 1.0277 23 1 -0.3634 0.8888 -0.5158 24 1 -0.3634 -0.8912 -0.5118 25 1 4.4912 2.2662 -2.0381 26 1 6.1611 2.4680 -1.4563 27 1 5.5576 0.8493 -1.8861 28 1 3.7560 3.3324 0.0855 29 1 5.1563 -1.7259 -1.0389 30 1 5.6775 -0.9978 0.4994 31 1 4.6506 -2.4517 0.5056 32 1 2.5700 -3.1456 -0.5120 33 1 0.8755 -2.6009 -0.5039 34 1 0.7097 -6.0143 0.8623 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260465763.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:21 Heat of formation + Delta-G solvation = -54.976487 kcal Electronic energy + Delta-G solvation = -15437.489145 eV Core-core repulsion = 12948.158936 eV Total energy + Delta-G solvation = -2489.330209 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.22754 -38.20263 -35.42912 -33.95386 -33.08809 -31.17982 -29.90259 -27.98071 -26.44471 -24.89784 -23.05664 -20.04011 -19.63194 -18.69204 -18.36484 -16.61812 -16.45181 -16.07758 -15.62959 -15.14296 -14.28366 -14.13275 -13.98476 -13.84997 -13.60505 -13.52606 -13.04761 -12.98401 -12.87423 -12.80234 -12.56789 -12.50901 -12.15261 -11.79233 -11.62463 -11.48075 -11.12713 -10.52295 -9.11354 -8.51835 -8.09029 -6.23356 1.37286 1.40234 1.41804 1.49948 2.15323 2.44512 2.47955 3.17162 3.46998 3.82007 4.22788 4.24737 4.32553 4.46716 4.55685 4.72469 4.82068 4.87399 4.92481 4.97599 5.06904 5.17605 5.21273 5.24900 5.40514 5.46638 5.67378 5.82038 5.87403 6.23401 6.40383 6.47455 6.68765 6.88882 7.00258 7.44018 8.96672 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035144 B = 0.007449 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.536575 B = 3758.237722 C = 3983.702294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.005 4.005 3 N -0.540 5.540 4 H 0.421 0.579 5 C -0.020 4.020 6 C 0.186 3.814 7 H 0.113 0.887 8 C -0.170 4.170 9 O -0.568 6.568 10 C -0.183 4.183 11 C -0.071 4.071 12 C -0.157 4.157 13 C 0.098 3.902 14 C -0.514 4.514 15 H 0.044 0.956 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.958 3.042 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.272 1.272 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.384 0.616 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.036 0.964 32 H -0.010 1.010 33 H -0.004 1.004 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.958 15.356 -3.158 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.117 4.117 3 N -0.138 5.138 4 H 0.260 0.740 5 C -0.133 4.133 6 C 0.126 3.874 7 H 0.130 0.870 8 C -0.227 4.227 9 O -0.375 6.375 10 C -0.190 4.190 11 C -0.128 4.128 12 C -0.164 4.164 13 C 0.061 3.939 14 C -0.552 4.552 15 H 0.062 0.938 16 C -0.193 4.193 17 N -0.574 5.574 18 Si 0.782 3.218 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.197 1.197 22 H 0.082 0.918 23 H 0.106 0.894 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.233 0.767 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.008 0.992 33 H 0.014 0.986 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.307 15.183 -2.776 16.322 hybrid contribution -0.924 -0.544 0.360 1.131 sum 4.383 14.639 -2.416 15.471 Atomic orbital electron populations 1.20148 0.87270 1.02845 1.02266 1.20215 0.93987 0.85847 1.11615 1.41305 1.04608 1.07814 1.60122 0.73959 1.20925 0.86254 0.94120 1.11985 1.20395 0.90663 0.80602 0.95715 0.86977 1.22396 1.02426 1.03257 0.94653 1.86607 1.59701 1.32845 1.58299 1.19426 0.94922 0.93111 1.11557 1.20045 0.93898 0.97788 1.01107 1.19838 0.93511 0.95411 1.07599 1.17299 0.93643 0.87861 0.95146 1.21349 1.44002 0.96982 0.92888 0.93786 1.25858 0.95279 0.96912 1.01275 1.70079 1.47366 1.07052 1.32868 0.85618 0.78754 0.77348 0.80032 1.19381 1.20453 1.19693 0.91836 0.89393 0.92164 0.91917 0.89853 0.91405 0.76727 0.91917 0.90717 0.94492 0.99209 0.98613 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.21 71.24 0.73 -1.54 16 2 C -0.01 -0.21 7.16 41.08 0.29 0.09 16 3 N -0.54 -16.26 5.93 -171.11 -1.01 -17.27 16 4 H 0.42 8.83 8.24 -92.70 -0.76 8.06 16 5 C -0.02 -0.64 6.12 41.08 0.25 -0.39 16 6 C 0.19 4.42 3.79 29.85 0.11 4.54 16 7 H 0.11 2.72 7.30 -2.38 -0.02 2.70 16 8 C -0.17 -3.18 9.52 71.98 0.68 -2.49 16 9 O -0.57 -12.33 13.25 -148.98 -1.97 -14.31 16 10 C -0.18 -7.43 6.14 -19.99 -0.12 -7.56 16 11 C -0.07 -2.64 9.90 71.24 0.71 -1.93 16 12 C -0.16 -7.41 5.33 -19.99 -0.11 -7.52 16 13 C 0.10 5.55 5.00 29.10 0.15 5.70 16 14 C -0.51 -30.79 9.09 25.60 0.23 -30.56 16 15 H 0.04 2.65 7.74 -2.91 -0.02 2.63 16 16 C 0.00 0.24 5.46 84.66 0.46 0.70 16 17 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 18 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 22 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.06 2.27 7.13 -2.39 -0.02 2.25 16 25 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.38 5.31 8.29 -74.06 -0.61 4.69 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.07 2.25 7.24 -2.39 -0.02 2.23 16 31 H 0.04 1.60 8.03 -2.39 -0.02 1.58 16 32 H -0.01 -0.64 8.03 -2.38 -0.02 -0.66 16 33 H 0.00 -0.26 7.13 -2.39 -0.02 -0.28 16 34 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -72.84 287.32 2.44 -70.40 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -0.27 Total: 11.89 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 3.39 Total: -40.96 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -0.73 Total: -74.99 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.97 Total: -14.31 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.84 2.44 -70.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465763.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.422 kcal (2) G-P(sol) polarization free energy of solvation -72.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds