Wall clock time and date at job start Mon Mar 30 2020 02:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99683 * 2 1 4 4 H 1.48495 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47080 * 300.00320 * 3 2 1 6 6 H 1.48505 * 109.46996 * 60.00191 * 3 2 1 7 7 C 1.37875 * 120.00535 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99896 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47164 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47103 * 304.99538 * 10 9 7 12 12 C 1.52996 * 109.47409 * 65.00140 * 10 9 7 13 13 C 1.53002 * 117.50028 * 248.74824 * 12 10 9 14 14 C 1.53002 * 117.50020 * 180.08580 * 12 10 9 15 15 C 1.53008 * 109.47135 * 185.00507 * 10 9 7 16 16 H 1.09001 * 110.85333 * 296.20783 * 15 10 9 17 17 C 1.54472 * 110.97004 * 59.99578 * 15 10 9 18 18 N 1.46766 * 105.47154 * 143.53563 * 17 15 10 19 19 C 1.34413 * 111.30232 * 342.98534 * 18 17 15 20 20 O 1.21281 * 124.94439 * 180.38689 * 19 18 17 21 21 C 1.51291 * 110.11586 * 0.40464 * 19 18 17 22 22 H 0.97000 * 120.00598 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46680 * 60.00423 * 9 7 2 24 24 H 1.08998 * 109.47472 * 300.00747 * 9 7 2 25 25 H 1.08998 * 115.54761 * 34.41928 * 12 10 9 26 26 H 1.08998 * 117.49409 * 359.97438 * 13 12 10 27 27 H 1.08998 * 117.49838 * 145.01561 * 13 12 10 28 28 H 1.08998 * 117.49751 * 214.97768 * 14 12 10 29 29 H 1.08995 * 117.49534 * 359.97438 * 14 12 10 30 30 H 1.09005 * 110.24985 * 24.53811 * 17 15 10 31 31 H 1.08998 * 110.32331 * 262.57143 * 17 15 10 32 32 H 0.97003 * 124.35016 * 162.71863 * 18 17 15 33 33 H 1.09001 * 110.48358 * 257.57603 * 21 19 18 34 34 H 1.08994 * 110.59314 * 134.98726 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 1 2.9296 -3.5551 -0.8424 12 6 3.0402 -3.6535 1.3068 13 6 4.5272 -3.3021 1.2273 14 6 4.0949 -4.7451 1.4995 15 6 1.4847 -4.9835 -0.1264 16 1 0.8420 -5.1452 0.7390 17 6 0.6687 -5.0290 -1.4372 18 7 0.7441 -6.4206 -1.8973 19 6 1.7450 -7.0818 -1.2909 20 8 2.0327 -8.2427 -1.4918 21 6 2.4604 -6.1672 -0.3210 22 1 -0.4851 0.8400 0.0004 23 1 0.6243 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 2.4913 -3.3227 2.1885 26 1 4.9393 -3.0774 0.2435 27 1 4.9567 -2.7404 2.0568 28 1 4.2401 -5.1321 2.5081 29 1 4.2221 -5.4695 0.6951 30 1 1.1086 -4.3622 -2.1788 31 1 -0.3678 -4.7501 -1.2477 32 1 0.1459 -6.8139 -2.5518 33 1 3.4014 -5.8199 -0.7476 34 1 2.6368 -6.6760 0.6266 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260477039.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:12 Heat of formation + Delta-G solvation = -46.427551 kcal Electronic energy + Delta-G solvation = -15536.170091 eV Core-core repulsion = 13047.210592 eV Total energy + Delta-G solvation = -2488.959499 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.44157 -39.06945 -37.03901 -35.17111 -33.34681 -31.23891 -28.37444 -26.71623 -23.78181 -23.17337 -22.03183 -21.41163 -20.48968 -18.55771 -18.04722 -16.96804 -16.56724 -16.17738 -15.69219 -15.67626 -14.68779 -14.41465 -14.08851 -13.97257 -13.70030 -13.29928 -13.05248 -12.76043 -12.52741 -12.26621 -12.09046 -11.85855 -11.62434 -11.39088 -11.17611 -10.85669 -10.59033 -10.40971 -10.32856 -10.06878 -8.09602 -6.14801 1.41792 1.45068 1.55077 1.57925 2.47561 2.48005 3.12416 3.26375 3.52116 3.66387 3.82966 4.14916 4.22967 4.32086 4.38352 4.62966 4.68347 4.77807 4.82224 4.96211 5.00564 5.06948 5.21542 5.30663 5.38480 5.45249 5.56018 5.70939 5.82579 5.92005 5.99349 6.04995 6.41460 7.02381 7.27576 7.52750 9.01962 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033374 B = 0.007749 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.771186 B = 3612.314451 C = 4243.500602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.033 3.967 10 C -0.028 4.028 11 H 0.061 0.939 12 C -0.134 4.134 13 C -0.184 4.184 14 C -0.179 4.179 15 C -0.083 4.083 16 H 0.090 0.910 17 C 0.106 3.894 18 N -0.720 5.720 19 C 0.514 3.486 20 O -0.588 6.588 21 C -0.142 4.142 22 H 0.258 0.742 23 H 0.006 0.994 24 H -0.007 1.007 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.414 0.586 33 H 0.114 0.886 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 -8.498 0.057 9.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.553 4.553 8 H 0.079 0.921 9 C -0.004 4.004 10 C -0.047 4.047 11 H 0.079 0.921 12 C -0.152 4.152 13 C -0.221 4.221 14 C -0.215 4.215 15 C -0.102 4.102 16 H 0.108 0.892 17 C -0.018 4.018 18 N -0.373 5.373 19 C 0.301 3.699 20 O -0.470 6.470 21 C -0.181 4.181 22 H 0.067 0.933 23 H 0.024 0.976 24 H 0.011 0.989 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.254 0.746 33 H 0.132 0.868 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.354 -8.909 0.030 9.916 hybrid contribution -0.300 1.245 -0.263 1.307 sum 4.054 -7.664 -0.233 8.673 Atomic orbital electron populations 1.70067 1.07395 1.27057 1.53035 1.25759 0.95499 1.02479 0.95791 0.85682 0.79429 0.80390 0.77266 1.18791 1.21051 1.21185 1.21693 0.93557 0.91997 1.48077 0.92109 1.19056 0.93825 0.92076 0.95426 1.20633 0.96144 0.92501 0.95422 0.92072 1.22018 0.90948 1.03638 0.98621 1.22923 0.97750 0.99065 1.02402 1.23420 1.02922 0.91608 1.03596 1.22103 0.96417 0.94273 0.97416 0.89186 1.22225 1.02108 0.81127 0.96326 1.46296 1.33689 1.13196 1.44165 1.21429 0.80446 0.86487 0.81491 1.90691 1.69672 1.18382 1.68259 1.22673 0.99716 0.95571 1.00164 0.93280 0.97554 0.98879 0.89925 0.89532 0.89510 0.88129 0.86970 0.90763 0.89542 0.74632 0.86770 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.88 13.29 21.45 0.28 -53.60 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.95 42.74 29.54 68.60 2.03 44.76 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.51 -26.57 8.61 25.60 0.22 -26.35 16 8 H 0.06 3.05 7.33 -2.91 -0.02 3.03 16 9 C 0.03 1.51 4.29 29.85 0.13 1.64 16 10 C -0.03 -0.96 1.42 -10.79 -0.02 -0.97 16 11 H 0.06 2.10 7.82 -2.39 -0.02 2.08 16 12 C -0.13 -4.27 4.51 -10.79 -0.05 -4.32 16 13 C -0.18 -5.41 9.90 30.62 0.30 -5.11 16 14 C -0.18 -4.37 8.95 30.62 0.27 -4.09 16 15 C -0.08 -2.28 2.68 -9.74 -0.03 -2.31 16 16 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 17 C 0.11 2.78 6.19 86.83 0.54 3.32 16 18 N -0.72 -17.79 6.24 -459.81 -2.87 -20.65 16 19 C 0.51 14.82 8.43 87.90 0.74 15.56 16 20 O -0.59 -21.27 18.03 -3.03 -0.05 -21.32 16 21 C -0.14 -3.47 4.31 30.59 0.13 -3.34 16 22 H 0.26 14.23 8.31 -92.71 -0.77 13.45 16 23 H 0.01 0.29 7.01 -2.39 -0.02 0.28 16 24 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 26 H 0.09 2.57 8.05 -2.39 -0.02 2.55 16 27 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.11 2.43 4.70 -2.39 -0.01 2.42 16 30 H 0.07 2.05 7.72 -2.38 -0.02 2.04 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.41 8.67 8.96 -92.71 -0.83 7.84 16 33 H 0.11 2.63 6.42 -2.39 -0.02 2.62 16 34 H 0.12 2.54 7.38 -2.39 -0.02 2.52 16 Total: -1.00 -62.84 275.69 2.36 -60.48 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.26 Total: 15.75 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 2.71 Total: -25.42 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -2.58 Total: -74.25 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -62.84 2.36 -60.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260477039.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.055 kcal (2) G-P(sol) polarization free energy of solvation -62.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds