Wall clock time and date at job start Mon Mar 30 2020 03:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48499 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47256 * 299.99714 * 3 2 1 6 6 H 1.48500 * 109.47197 * 59.99836 * 3 2 1 7 7 C 1.37876 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99657 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46806 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47224 * 304.99979 * 10 9 7 12 12 C 1.53001 * 109.46904 * 65.00390 * 10 9 7 13 13 C 1.53006 * 117.49477 * 248.61896 * 12 10 9 14 14 C 1.53004 * 117.49492 * 179.97438 * 12 10 9 15 15 C 1.53006 * 109.46870 * 184.99736 * 10 9 7 16 16 H 1.08998 * 110.21678 * 300.47774 * 15 10 9 17 17 C 1.54474 * 110.31749 * 62.45825 * 15 10 9 18 18 C 1.54625 * 101.76763 * 93.61878 * 17 15 10 19 19 C 1.51286 * 104.19405 * 24.79834 * 18 17 15 20 20 O 1.21283 * 124.93955 * 163.70869 * 19 18 17 21 21 N 1.34417 * 110.11297 * 343.74897 * 19 18 17 22 22 H 0.97001 * 119.99569 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47162 * 60.00169 * 9 7 2 24 24 H 1.08998 * 109.47152 * 299.99272 * 9 7 2 25 25 H 1.08995 * 115.55273 * 34.32680 * 12 10 9 26 26 H 1.08997 * 117.49851 * 359.97438 * 13 12 10 27 27 H 1.08997 * 117.50017 * 145.02241 * 13 12 10 28 28 H 1.09003 * 117.49684 * 214.97487 * 14 12 10 29 29 H 1.08995 * 117.50236 * 359.97438 * 14 12 10 30 30 H 1.09001 * 110.97106 * 335.49967 * 17 15 10 31 31 H 1.09007 * 110.96855 * 211.73826 * 17 15 10 32 32 H 1.09001 * 110.48978 * 266.11806 * 18 17 15 33 33 H 1.09000 * 110.49031 * 143.47236 * 18 17 15 34 34 H 0.97006 * 124.34688 * 179.62103 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9294 -3.5552 -0.8412 12 6 3.0400 -3.6535 1.3079 13 6 4.5277 -3.3051 1.2280 14 6 4.0927 -4.7468 1.5018 15 6 1.4844 -4.9835 -0.1251 16 1 0.7899 -5.0989 0.7070 17 6 0.7232 -5.0386 -1.4682 18 6 1.7396 -5.7679 -2.3770 19 6 2.5914 -6.5663 -1.4148 20 8 3.3180 -7.4853 -1.7285 21 7 2.4249 -6.1096 -0.1616 22 1 -0.4849 0.8401 0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.4915 -3.3212 2.1893 26 1 4.9403 -3.0824 0.2441 27 1 4.9582 -2.7433 2.0569 28 1 4.2372 -5.1330 2.5108 29 1 4.2188 -5.4722 0.6982 30 1 0.5165 -4.0353 -1.8409 31 1 -0.1972 -5.6145 -1.3716 32 1 2.3511 -5.0475 -2.9204 33 1 1.2235 -6.4317 -3.0707 34 1 2.8696 -6.4768 0.6183 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260506575.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:42 Heat of formation + Delta-G solvation = -22.549244 kcal Electronic energy + Delta-G solvation = -15724.427001 eV Core-core repulsion = 13236.502942 eV Total energy + Delta-G solvation = -2487.924058 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.32552 -37.57191 -35.61073 -33.34163 -31.35849 -30.56928 -27.00382 -24.65368 -22.26407 -22.09120 -20.80577 -20.05880 -19.29959 -17.17954 -16.39511 -15.43543 -15.13446 -14.55400 -14.32944 -14.12943 -13.39447 -13.05312 -12.84297 -12.35296 -12.15616 -11.80663 -11.24367 -11.14525 -11.08606 -10.83759 -10.66208 -10.54401 -10.13170 -9.88991 -9.58238 -9.54595 -9.32369 -9.06375 -8.43736 -8.38370 -6.04475 -4.04967 2.86398 3.27979 3.36623 3.40293 3.69258 4.35199 4.43290 4.68465 4.83113 5.13778 5.25141 5.31972 5.41012 5.50368 5.55665 5.80072 5.87957 5.91547 5.98396 6.19001 6.24599 6.37173 6.39982 6.43981 6.57288 6.86594 6.93791 7.15933 7.31922 7.59476 7.69565 7.94695 8.37839 8.52877 9.01481 9.59185 11.06755 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032927 B = 0.008255 C = 0.007241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.155295 B = 3391.039602 C = 3865.710085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.058 0.942 9 C 0.030 3.970 10 C -0.062 4.062 11 H 0.063 0.937 12 C -0.110 4.110 13 C -0.169 4.169 14 C -0.216 4.216 15 C 0.134 3.866 16 H 0.085 0.915 17 C -0.132 4.132 18 C -0.156 4.156 19 C 0.516 3.484 20 O -0.556 6.556 21 N -0.721 5.721 22 H 0.259 0.741 23 H 0.025 0.975 24 H 0.019 0.981 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -8.173 0.321 8.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.549 4.549 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.081 4.081 11 H 0.081 0.919 12 C -0.128 4.128 13 C -0.206 4.206 14 C -0.253 4.253 15 C 0.030 3.970 16 H 0.103 0.897 17 C -0.170 4.170 18 C -0.196 4.196 19 C 0.303 3.697 20 O -0.435 6.435 21 N -0.377 5.377 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.037 0.963 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.181 -8.496 0.067 8.772 hybrid contribution 0.668 1.017 0.496 1.314 sum 2.849 -7.480 0.563 8.024 Atomic orbital electron populations 1.69957 1.05956 1.26445 1.51244 1.24984 0.94780 0.99110 0.95526 0.86611 0.80221 0.84112 0.77524 1.19787 1.21126 1.21153 1.21234 0.93209 0.90572 1.49847 0.92356 1.19190 0.93261 0.90674 0.97576 1.21284 0.97959 0.93948 0.94948 0.91872 1.22160 0.90564 1.00212 0.99856 1.22792 0.98727 0.96789 1.02284 1.23308 1.07438 0.92863 1.01740 1.21872 0.90370 0.86217 0.98571 0.89708 1.22776 0.97123 1.03135 0.93961 1.22329 0.98659 1.00231 0.98369 1.21000 0.81553 0.82574 0.84617 1.90700 1.41194 1.30509 1.81074 1.46785 1.47135 1.34627 1.09174 0.93119 0.95729 0.96287 0.88055 0.89375 0.89652 0.89831 0.88649 0.87569 0.90583 0.87922 0.88701 0.75069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 13.29 55.43 0.74 -24.63 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -13.19 8.61 -34.44 -0.30 -13.49 16 8 H 0.06 1.50 7.34 -52.49 -0.39 1.12 16 9 C 0.03 0.68 4.30 -27.88 -0.12 0.56 16 10 C -0.06 -1.11 1.80 -90.61 -0.16 -1.27 16 11 H 0.06 1.21 7.90 -51.93 -0.41 0.79 16 12 C -0.11 -1.87 4.51 -90.61 -0.41 -2.28 16 13 C -0.17 -2.78 9.90 -26.70 -0.26 -3.05 16 14 C -0.22 -3.14 8.69 -26.70 -0.23 -3.37 16 15 C 0.13 1.99 3.04 -67.01 -0.20 1.78 16 16 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 17 C -0.13 -1.80 6.52 -25.10 -0.16 -1.96 16 18 C -0.16 -2.09 6.86 -26.74 -0.18 -2.27 16 19 C 0.52 8.23 8.43 -10.86 -0.09 8.13 16 20 O -0.56 -10.76 18.03 5.56 0.10 -10.66 16 21 N -0.72 -10.32 4.13 -52.76 -0.22 -10.54 16 22 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 23 H 0.02 0.58 6.10 -51.93 -0.32 0.26 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.10 1.82 8.11 -51.93 -0.42 1.40 16 26 H 0.09 1.50 8.05 -51.93 -0.42 1.09 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.10 1.40 5.56 -51.93 -0.29 1.11 16 30 H 0.11 1.59 5.94 -51.93 -0.31 1.28 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.41 5.43 6.58 -40.82 -0.27 5.17 16 LS Contribution 275.29 15.07 4.15 4.15 Total: -1.00 -29.40 275.29 -7.39 -36.79 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.91 Total: 4.79 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.22 Total: -15.78 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.52 Total: -35.17 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.10 Total: -10.66 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.40 -7.39 -36.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260506575.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.242 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds