Wall clock time and date at job start Mon Mar 30 2020 03:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48499 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47256 * 299.99714 * 3 2 1 6 6 H 1.48500 * 109.47197 * 59.99836 * 3 2 1 7 7 C 1.37876 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99657 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46806 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47224 * 304.99979 * 10 9 7 12 12 C 1.53001 * 109.46904 * 65.00390 * 10 9 7 13 13 C 1.53006 * 117.49477 * 248.61896 * 12 10 9 14 14 C 1.53004 * 117.49492 * 179.97438 * 12 10 9 15 15 C 1.53006 * 109.46870 * 184.99736 * 10 9 7 16 16 H 1.08998 * 110.21678 * 300.47774 * 15 10 9 17 17 C 1.54474 * 110.31749 * 62.45825 * 15 10 9 18 18 C 1.54625 * 101.76763 * 93.61878 * 17 15 10 19 19 C 1.51286 * 104.19405 * 24.79834 * 18 17 15 20 20 O 1.21283 * 124.93955 * 163.70869 * 19 18 17 21 21 N 1.34417 * 110.11297 * 343.74897 * 19 18 17 22 22 H 0.97001 * 119.99569 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47162 * 60.00169 * 9 7 2 24 24 H 1.08998 * 109.47152 * 299.99272 * 9 7 2 25 25 H 1.08995 * 115.55273 * 34.32680 * 12 10 9 26 26 H 1.08997 * 117.49851 * 359.97438 * 13 12 10 27 27 H 1.08997 * 117.50017 * 145.02241 * 13 12 10 28 28 H 1.09003 * 117.49684 * 214.97487 * 14 12 10 29 29 H 1.08995 * 117.50236 * 359.97438 * 14 12 10 30 30 H 1.09001 * 110.97106 * 335.49967 * 17 15 10 31 31 H 1.09007 * 110.96855 * 211.73826 * 17 15 10 32 32 H 1.09001 * 110.48978 * 266.11806 * 18 17 15 33 33 H 1.09000 * 110.49031 * 143.47236 * 18 17 15 34 34 H 0.97006 * 124.34688 * 179.62103 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9294 -3.5552 -0.8412 12 6 3.0400 -3.6535 1.3079 13 6 4.5277 -3.3051 1.2280 14 6 4.0927 -4.7468 1.5018 15 6 1.4844 -4.9835 -0.1251 16 1 0.7899 -5.0989 0.7070 17 6 0.7232 -5.0386 -1.4682 18 6 1.7396 -5.7679 -2.3770 19 6 2.5914 -6.5663 -1.4148 20 8 3.3180 -7.4853 -1.7285 21 7 2.4249 -6.1096 -0.1616 22 1 -0.4849 0.8401 0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.4915 -3.3212 2.1893 26 1 4.9403 -3.0824 0.2441 27 1 4.9582 -2.7433 2.0569 28 1 4.2372 -5.1330 2.5108 29 1 4.2188 -5.4722 0.6982 30 1 0.5165 -4.0353 -1.8409 31 1 -0.1972 -5.6145 -1.3716 32 1 2.3511 -5.0475 -2.9204 33 1 1.2235 -6.4317 -3.0707 34 1 2.8696 -6.4768 0.6183 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260506575.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:42 Heat of formation + Delta-G solvation = -39.890636 kcal Electronic energy + Delta-G solvation = -15725.178980 eV Core-core repulsion = 13236.502942 eV Total energy + Delta-G solvation = -2488.676037 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.59100 -38.94889 -36.89909 -35.22225 -32.92231 -31.86645 -28.63406 -26.15324 -23.95974 -23.35217 -22.06779 -21.27951 -20.74002 -18.64098 -18.13358 -16.77578 -16.67271 -16.14215 -15.75179 -15.48989 -14.70171 -14.46175 -14.23191 -13.95078 -13.58100 -13.28826 -12.83691 -12.82164 -12.50488 -12.36630 -12.29965 -11.80640 -11.74901 -11.38153 -11.22371 -10.88969 -10.83024 -10.69449 -10.40352 -9.76936 -8.11122 -6.16196 1.40417 1.43852 1.53658 1.60777 2.43470 2.51520 3.05213 3.24024 3.49332 3.67007 3.92169 4.04403 4.19796 4.20419 4.34013 4.50552 4.67957 4.70899 4.79976 4.93289 5.03410 5.05943 5.13834 5.18118 5.30003 5.33505 5.48820 5.67728 5.85105 5.92213 5.96381 6.11522 6.39625 6.99526 7.30254 7.50940 9.00080 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032927 B = 0.008255 C = 0.007241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.155295 B = 3391.039602 C = 3865.710085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.049 4.049 11 H 0.050 0.950 12 C -0.129 4.129 13 C -0.182 4.182 14 C -0.182 4.182 15 C 0.140 3.860 16 H 0.096 0.904 17 C -0.128 4.128 18 C -0.150 4.150 19 C 0.513 3.487 20 O -0.591 6.591 21 N -0.709 5.709 22 H 0.260 0.740 23 H 0.014 0.986 24 H -0.002 1.002 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.510 -8.836 0.519 9.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.069 4.069 11 H 0.069 0.931 12 C -0.148 4.148 13 C -0.219 4.219 14 C -0.219 4.219 15 C 0.035 3.965 16 H 0.114 0.886 17 C -0.165 4.165 18 C -0.190 4.190 19 C 0.301 3.699 20 O -0.473 6.473 21 N -0.364 5.364 22 H 0.068 0.932 23 H 0.032 0.968 24 H 0.017 0.983 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.684 -9.154 0.280 9.544 hybrid contribution 0.521 1.231 0.454 1.412 sum 3.205 -7.923 0.735 8.578 Atomic orbital electron populations 1.70057 1.07224 1.27126 1.52713 1.25715 0.95526 1.02307 0.95695 0.85697 0.79237 0.80493 0.77411 1.19213 1.20891 1.20995 1.21619 0.93324 0.92056 1.48513 0.92634 1.19040 0.93583 0.91455 0.95941 1.21016 0.96856 0.93945 0.95078 0.93138 1.22074 0.90878 1.02855 0.98954 1.22857 0.98141 0.98766 1.02162 1.23293 1.03913 0.91633 1.03099 1.21752 0.90147 0.84695 0.99926 0.88555 1.22749 0.98051 1.02720 0.93009 1.22346 0.98261 1.00191 0.98183 1.21352 0.81186 0.82129 0.85263 1.90686 1.42812 1.32172 1.81626 1.46687 1.46674 1.33874 1.09175 0.93158 0.96811 0.98327 0.89101 0.90364 0.88953 0.87393 0.88512 0.89103 0.88187 0.87829 0.86526 0.74394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.16 13.29 21.45 0.28 -52.87 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.94 42.90 29.54 68.60 2.03 44.93 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.52 -26.86 8.61 25.60 0.22 -26.64 16 8 H 0.06 2.86 7.34 -2.91 -0.02 2.84 16 9 C 0.04 1.69 4.30 29.85 0.13 1.82 16 10 C -0.05 -1.74 1.80 -10.79 -0.02 -1.76 16 11 H 0.05 1.90 7.90 -2.39 -0.02 1.88 16 12 C -0.13 -4.29 4.51 -10.79 -0.05 -4.33 16 13 C -0.18 -5.77 9.90 30.61 0.30 -5.47 16 14 C -0.18 -4.87 8.69 30.61 0.27 -4.60 16 15 C 0.14 3.90 3.04 45.44 0.14 4.04 16 16 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 17 C -0.13 -3.24 6.52 31.65 0.21 -3.03 16 18 C -0.15 -3.72 6.86 30.59 0.21 -3.51 16 19 C 0.51 15.41 8.43 87.90 0.74 16.15 16 20 O -0.59 -22.07 18.03 -3.04 -0.05 -22.12 16 21 N -0.71 -18.83 4.13 -439.44 -1.82 -20.64 16 22 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 23 H 0.01 0.65 6.10 -2.39 -0.01 0.64 16 24 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 25 H 0.09 3.22 8.11 -2.39 -0.02 3.20 16 26 H 0.08 2.62 8.05 -2.39 -0.02 2.60 16 27 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.10 2.59 5.56 -2.39 -0.01 2.58 16 30 H 0.09 2.65 5.94 -2.39 -0.01 2.63 16 31 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.41 10.00 6.58 -92.70 -0.61 9.39 16 Total: -1.00 -62.22 275.29 3.53 -58.69 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.48 Total: 18.62 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 2.61 Total: -26.60 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -1.53 Total: -73.52 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -62.22 3.53 -58.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260506575.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.797 kcal (2) G-P(sol) polarization free energy of solvation -62.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds