Wall clock time and date at job start Mon Mar 30 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99790 * 2 1 4 4 H 1.48496 * 109.47020 * 269.99968 * 3 2 1 5 5 H 1.48503 * 109.46836 * 150.00321 * 3 2 1 6 6 H 1.48493 * 109.47319 * 30.00305 * 3 2 1 7 7 C 1.37877 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47192 * 185.10408 * 9 7 2 11 11 H 1.09002 * 109.47438 * 53.61597 * 10 9 7 12 12 C 1.52997 * 109.47566 * 293.61670 * 10 9 7 13 13 C 1.53000 * 117.49754 * 4.70831 * 12 10 9 14 14 C 1.53001 * 117.49587 * 296.04802 * 12 10 9 15 15 C 1.52998 * 109.47306 * 173.61053 * 10 9 7 16 16 H 1.09008 * 110.21387 * 61.93574 * 15 10 9 17 17 C 1.54472 * 110.24932 * 300.00443 * 15 10 9 18 18 C 1.54634 * 101.76879 * 215.57924 * 17 15 10 19 19 C 1.51281 * 104.19043 * 24.79573 * 18 17 15 20 20 O 1.21287 * 124.94027 * 163.74739 * 19 18 17 21 21 N 1.34416 * 110.12027 * 343.75174 * 19 18 17 22 22 H 0.97002 * 119.99683 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47257 * 305.10806 * 9 7 2 24 24 H 1.09003 * 109.46834 * 65.10589 * 9 7 2 25 25 H 1.09001 * 115.55141 * 150.37760 * 12 10 9 26 26 H 1.09004 * 117.49508 * 359.97438 * 13 12 10 27 27 H 1.08997 * 117.50030 * 145.02161 * 13 12 10 28 28 H 1.09002 * 117.49535 * 214.97639 * 14 12 10 29 29 H 1.08999 * 117.49921 * 0.02562 * 14 12 10 30 30 H 1.08997 * 110.97457 * 333.69897 * 17 15 10 31 31 H 1.09001 * 110.97401 * 97.45868 * 17 15 10 32 32 H 1.08997 * 110.48785 * 143.47487 * 18 17 15 33 33 H 1.09002 * 110.48572 * 265.99064 * 18 17 15 34 34 H 0.96999 * 124.35720 * 179.57411 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 3.5467 1.4402 0.7000 6 1 1.4466 2.6526 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2404 -3.6592 0.1271 11 1 2.8746 -3.5016 0.9995 12 6 3.1101 -3.7286 -1.1297 13 6 2.9299 -2.6261 -2.1751 14 6 2.4123 -4.0392 -2.4553 15 6 1.4700 -4.9713 0.2873 16 1 0.8571 -5.1582 -0.5945 17 6 0.5850 -4.9207 1.5524 18 6 0.6663 -6.3815 2.0528 19 6 1.9723 -6.8950 1.4877 20 8 2.5482 -7.8931 1.8660 21 7 2.4017 -6.0841 0.5055 22 1 -0.4850 -0.8401 -0.0004 23 1 0.5579 -2.5185 0.8405 24 1 0.6945 -2.5973 -0.9326 25 1 4.1149 -4.1254 -0.9847 26 1 2.1915 -1.8517 -1.9677 27 1 3.8161 -2.2979 -2.7183 28 1 2.9582 -4.6400 -3.1827 29 1 1.3335 -4.1937 -2.4321 30 1 0.9976 -4.2322 2.2899 31 1 -0.4407 -4.6511 1.3005 32 1 0.6841 -6.4112 3.1423 33 1 -0.1723 -6.9632 1.6699 34 1 3.2221 -6.2170 0.0053 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260506579.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:44 Heat of formation + Delta-G solvation = -30.604648 kcal Electronic energy + Delta-G solvation = -15709.009568 eV Core-core repulsion = 13220.736202 eV Total energy + Delta-G solvation = -2488.273367 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.25418 -37.96882 -35.79303 -33.28824 -31.14532 -30.64490 -26.90894 -24.45858 -22.63353 -21.81705 -21.07270 -20.20428 -18.56192 -17.14196 -16.57704 -16.25196 -15.38801 -14.63083 -13.79409 -13.78637 -13.46278 -13.35220 -13.01846 -12.51447 -12.09788 -11.97259 -11.46323 -11.25338 -10.82868 -10.74203 -10.56789 -10.17244 -10.15125 -9.79581 -9.58160 -9.49411 -9.36499 -8.87352 -8.46366 -8.37172 -6.40824 -4.08006 2.78102 3.40273 3.43238 3.58549 3.63673 4.43048 4.49098 4.58002 4.77283 5.04966 5.23389 5.32531 5.46789 5.57959 5.58513 5.66573 5.77288 5.91861 6.05430 6.11163 6.16863 6.30097 6.42312 6.64255 6.65251 6.82021 7.06423 7.25542 7.26700 7.31654 7.44991 8.15116 8.42786 8.45867 8.82770 9.58728 10.98932 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035249 B = 0.007872 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.151634 B = 3556.236864 C = 3975.464852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.065 2.935 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.588 4.588 8 H 0.053 0.947 9 C 0.014 3.986 10 C -0.053 4.053 11 H 0.070 0.930 12 C -0.144 4.144 13 C -0.165 4.165 14 C -0.197 4.197 15 C 0.134 3.866 16 H 0.077 0.923 17 C -0.125 4.125 18 C -0.158 4.158 19 C 0.516 3.484 20 O -0.554 6.554 21 N -0.718 5.718 22 H 0.269 0.731 23 H 0.015 0.985 24 H 0.010 0.990 25 H 0.083 0.917 26 H 0.144 0.856 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 -7.550 -0.799 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.894 3.106 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.626 4.626 8 H 0.071 0.929 9 C -0.023 4.023 10 C -0.072 4.072 11 H 0.088 0.912 12 C -0.162 4.162 13 C -0.201 4.201 14 C -0.234 4.234 15 C 0.030 3.970 16 H 0.095 0.905 17 C -0.163 4.163 18 C -0.198 4.198 19 C 0.303 3.697 20 O -0.433 6.433 21 N -0.372 5.372 22 H 0.079 0.921 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.101 0.899 26 H 0.161 0.839 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.461 -6.404 -0.535 6.590 hybrid contribution 0.678 -1.692 -0.337 1.853 sum 2.138 -8.095 -0.872 8.418 Atomic orbital electron populations 1.70773 1.06899 1.30597 1.46651 1.25751 0.96490 1.02532 0.94101 0.83579 0.74776 0.75452 0.76791 1.21481 1.21532 1.21116 1.21984 0.94528 0.91413 1.54684 0.92851 1.19349 0.94136 0.92514 0.96331 1.21028 0.97054 0.93021 0.96141 0.91202 1.22060 0.98496 1.05362 0.90275 1.23617 1.03857 0.92803 0.99845 1.22916 0.99924 1.01454 0.99146 1.21947 0.90383 0.86870 0.97816 0.90497 1.22690 1.01268 0.95047 0.97335 1.22364 0.96657 0.97882 1.02873 1.20940 0.86915 0.82354 0.79504 1.90707 1.62713 1.26361 1.63528 1.46405 1.25777 1.27581 1.37404 0.92069 0.96634 0.97201 0.89925 0.83865 0.90937 0.90529 0.89527 0.89499 0.89271 0.88439 0.88242 0.75526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.96 13.65 55.43 0.76 -25.20 16 2 C 0.02 0.40 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 24.05 29.90 -169.99 -5.08 18.96 16 4 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.59 -14.81 6.17 -34.44 -0.21 -15.02 16 8 H 0.05 1.36 7.23 -52.49 -0.38 0.98 16 9 C 0.01 0.31 3.18 -27.89 -0.09 0.22 16 10 C -0.05 -0.96 1.85 -90.63 -0.17 -1.12 16 11 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 12 C -0.14 -2.45 5.12 -90.62 -0.46 -2.92 16 13 C -0.16 -3.05 8.59 -26.69 -0.23 -3.28 16 14 C -0.20 -3.15 9.34 -26.69 -0.25 -3.40 16 15 C 0.13 2.01 2.85 -67.01 -0.19 1.82 16 16 H 0.08 1.14 7.03 -51.92 -0.37 0.77 16 17 C -0.13 -1.73 5.43 -25.10 -0.14 -1.86 16 18 C -0.16 -1.99 6.86 -26.74 -0.18 -2.18 16 19 C 0.52 8.15 8.43 -10.86 -0.09 8.06 16 20 O -0.55 -10.67 18.03 5.55 0.10 -10.57 16 21 N -0.72 -10.50 5.76 -52.76 -0.30 -10.80 16 22 H 0.27 7.53 7.19 -40.82 -0.29 7.24 16 23 H 0.02 0.35 6.63 -51.93 -0.34 0.01 16 24 H 0.01 0.23 6.67 -51.93 -0.35 -0.12 16 25 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.14 3.17 4.62 -51.93 -0.24 2.93 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.40 7.06 -51.93 -0.37 1.03 16 30 H 0.09 1.28 7.81 -51.93 -0.41 0.88 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.41 5.64 8.55 -40.82 -0.35 5.29 16 LS Contribution 271.73 15.07 4.09 4.09 Total: -1.00 -28.97 271.73 -7.39 -36.37 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.84 Total: 6.53 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.11 Total: -19.38 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.45 Total: -36.01 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.10 Total: -10.57 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.96 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.97 -7.39 -36.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260506579.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.761 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds