Wall clock time and date at job start Mon Mar 30 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99790 * 2 1 4 4 H 1.48496 * 109.47020 * 269.99968 * 3 2 1 5 5 H 1.48503 * 109.46836 * 150.00321 * 3 2 1 6 6 H 1.48493 * 109.47319 * 30.00305 * 3 2 1 7 7 C 1.37877 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47192 * 185.10408 * 9 7 2 11 11 H 1.09002 * 109.47438 * 53.61597 * 10 9 7 12 12 C 1.52997 * 109.47566 * 293.61670 * 10 9 7 13 13 C 1.53000 * 117.49754 * 4.70831 * 12 10 9 14 14 C 1.53001 * 117.49587 * 296.04802 * 12 10 9 15 15 C 1.52998 * 109.47306 * 173.61053 * 10 9 7 16 16 H 1.09008 * 110.21387 * 61.93574 * 15 10 9 17 17 C 1.54472 * 110.24932 * 300.00443 * 15 10 9 18 18 C 1.54634 * 101.76879 * 215.57924 * 17 15 10 19 19 C 1.51281 * 104.19043 * 24.79573 * 18 17 15 20 20 O 1.21287 * 124.94027 * 163.74739 * 19 18 17 21 21 N 1.34416 * 110.12027 * 343.75174 * 19 18 17 22 22 H 0.97002 * 119.99683 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47257 * 305.10806 * 9 7 2 24 24 H 1.09003 * 109.46834 * 65.10589 * 9 7 2 25 25 H 1.09001 * 115.55141 * 150.37760 * 12 10 9 26 26 H 1.09004 * 117.49508 * 359.97438 * 13 12 10 27 27 H 1.08997 * 117.50030 * 145.02161 * 13 12 10 28 28 H 1.09002 * 117.49535 * 214.97639 * 14 12 10 29 29 H 1.08999 * 117.49921 * 0.02562 * 14 12 10 30 30 H 1.08997 * 110.97457 * 333.69897 * 17 15 10 31 31 H 1.09001 * 110.97401 * 97.45868 * 17 15 10 32 32 H 1.08997 * 110.48785 * 143.47487 * 18 17 15 33 33 H 1.09002 * 110.48572 * 265.99064 * 18 17 15 34 34 H 0.96999 * 124.35720 * 179.57411 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 3.5467 1.4402 0.7000 6 1 1.4466 2.6526 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2404 -3.6592 0.1271 11 1 2.8746 -3.5016 0.9995 12 6 3.1101 -3.7286 -1.1297 13 6 2.9299 -2.6261 -2.1751 14 6 2.4123 -4.0392 -2.4553 15 6 1.4700 -4.9713 0.2873 16 1 0.8571 -5.1582 -0.5945 17 6 0.5850 -4.9207 1.5524 18 6 0.6663 -6.3815 2.0528 19 6 1.9723 -6.8950 1.4877 20 8 2.5482 -7.8931 1.8660 21 7 2.4017 -6.0841 0.5055 22 1 -0.4850 -0.8401 -0.0004 23 1 0.5579 -2.5185 0.8405 24 1 0.6945 -2.5973 -0.9326 25 1 4.1149 -4.1254 -0.9847 26 1 2.1915 -1.8517 -1.9677 27 1 3.8161 -2.2979 -2.7183 28 1 2.9582 -4.6400 -3.1827 29 1 1.3335 -4.1937 -2.4321 30 1 0.9976 -4.2322 2.2899 31 1 -0.4407 -4.6511 1.3005 32 1 0.6841 -6.4112 3.1423 33 1 -0.1723 -6.9632 1.6699 34 1 3.2221 -6.2170 0.0053 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260506579.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:44 Heat of formation + Delta-G solvation = -48.668232 kcal Electronic energy + Delta-G solvation = -15709.792864 eV Core-core repulsion = 13220.736202 eV Total energy + Delta-G solvation = -2489.056663 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.52062 -39.40278 -37.11969 -35.19081 -32.47070 -32.02823 -28.56704 -25.89477 -24.45303 -23.14688 -22.36639 -21.42510 -20.02982 -18.77420 -18.10625 -17.62696 -16.70925 -15.94865 -15.62342 -15.21261 -15.03672 -14.71428 -14.26292 -13.80631 -13.55128 -13.35588 -13.21143 -12.79654 -12.41344 -12.08126 -11.94478 -11.93538 -11.74780 -11.31529 -10.93324 -10.92472 -10.81881 -10.56124 -10.38503 -9.94414 -8.51525 -6.16847 1.55361 1.56738 1.63019 1.79712 2.42844 2.62331 3.06014 3.28914 3.40593 3.64037 3.85639 3.99469 4.15845 4.25335 4.29292 4.39041 4.56801 4.69185 4.82975 4.86850 4.91156 4.97850 5.07215 5.18589 5.22624 5.39558 5.51419 5.62598 5.77506 5.83913 6.05360 6.19456 6.36730 6.76508 7.24244 7.55095 8.89653 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035249 B = 0.007872 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.151634 B = 3556.236864 C = 3975.464852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.036 4.036 3 Si 1.104 2.896 4 H -0.277 1.277 5 H -0.275 1.275 6 H -0.289 1.289 7 C -0.581 4.581 8 H 0.047 0.953 9 C 0.022 3.978 10 C -0.045 4.045 11 H 0.055 0.945 12 C -0.145 4.145 13 C -0.188 4.188 14 C -0.172 4.172 15 C 0.143 3.857 16 H 0.087 0.913 17 C -0.125 4.125 18 C -0.145 4.145 19 C 0.512 3.488 20 O -0.591 6.591 21 N -0.710 5.710 22 H 0.259 0.741 23 H 0.004 0.996 24 H -0.002 1.002 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 -8.497 -1.134 8.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.233 4.233 3 Si 0.928 3.072 4 H -0.203 1.203 5 H -0.200 1.200 6 H -0.216 1.216 7 C -0.619 4.619 8 H 0.065 0.935 9 C -0.016 4.016 10 C -0.065 4.065 11 H 0.073 0.927 12 C -0.163 4.163 13 C -0.224 4.224 14 C -0.208 4.208 15 C 0.038 3.962 16 H 0.105 0.895 17 C -0.163 4.163 18 C -0.185 4.185 19 C 0.300 3.700 20 O -0.473 6.473 21 N -0.363 5.363 22 H 0.069 0.931 23 H 0.022 0.978 24 H 0.017 0.983 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.978 -7.351 -0.883 7.663 hybrid contribution 0.549 -1.403 -0.266 1.530 sum 2.526 -8.754 -1.149 9.183 Atomic orbital electron populations 1.70883 1.07828 1.30055 1.49578 1.26901 0.96582 1.05857 0.93986 0.83061 0.74269 0.72437 0.77404 1.20327 1.20041 1.21553 1.22266 0.94345 0.92761 1.52516 0.93489 1.19196 0.94360 0.92951 0.95052 1.20827 0.96241 0.93188 0.96215 0.92670 1.22111 0.99376 1.04746 0.90076 1.23396 1.03800 0.93214 1.02011 1.22946 1.00040 0.99265 0.98589 1.21794 0.90120 0.85330 0.98962 0.89546 1.22680 1.01486 0.95735 0.96374 1.22370 0.95716 0.96771 1.03653 1.21407 0.87629 0.81765 0.79229 1.90693 1.63991 1.28027 1.64618 1.46353 1.25807 1.27005 1.37114 0.93123 0.97800 0.98348 0.88184 0.87773 0.89761 0.87757 0.89762 0.90820 0.88159 0.87119 0.85715 0.75100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.71 13.65 21.45 0.29 -54.42 16 2 C -0.04 -1.91 5.46 84.65 0.46 -1.45 16 3 Si 1.10 48.53 29.90 68.60 2.05 50.58 16 4 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.58 -29.49 6.17 25.60 0.16 -29.33 16 8 H 0.05 2.40 7.23 -2.91 -0.02 2.38 16 9 C 0.02 0.96 3.18 29.85 0.09 1.06 16 10 C -0.05 -1.59 1.85 -10.80 -0.02 -1.61 16 11 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 12 C -0.14 -4.68 5.12 -10.79 -0.06 -4.74 16 13 C -0.19 -6.76 8.59 30.62 0.26 -6.49 16 14 C -0.17 -5.05 9.34 30.62 0.29 -4.76 16 15 C 0.14 4.00 2.85 45.44 0.13 4.13 16 16 H 0.09 2.34 7.03 -2.38 -0.02 2.32 16 17 C -0.12 -3.21 5.43 31.65 0.17 -3.03 16 18 C -0.15 -3.29 6.86 30.59 0.21 -3.08 16 19 C 0.51 15.11 8.43 87.90 0.74 15.85 16 20 O -0.59 -21.95 18.03 -3.05 -0.05 -22.00 16 21 N -0.71 -19.24 5.76 -439.43 -2.53 -21.77 16 22 H 0.26 14.92 7.19 -92.71 -0.67 14.25 16 23 H 0.00 0.17 6.63 -2.38 -0.02 0.16 16 24 H 0.00 -0.08 6.67 -2.39 -0.02 -0.09 16 25 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.10 4.66 4.62 -2.38 -0.01 4.65 16 27 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.08 2.54 7.06 -2.39 -0.02 2.52 16 30 H 0.07 2.10 7.81 -2.39 -0.02 2.08 16 31 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.41 10.43 8.55 -92.71 -0.79 9.64 16 Total: -1.00 -62.35 271.73 2.61 -59.74 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.41 Total: 21.32 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 2.44 Total: -33.44 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -2.24 Total: -76.19 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.05 Total: 50.58 kcal Total: -62.35 2.61 -59.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260506579.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.068 kcal (2) G-P(sol) polarization free energy of solvation -62.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds