Wall clock time and date at job start Mon Mar 30 2020 02:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00165 * 2 1 4 4 H 1.48498 * 109.47421 * 240.00484 * 3 2 1 5 5 H 1.48504 * 109.46679 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47155 * 119.99974 * 3 2 1 7 7 C 1.37879 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00380 * 185.52261 * 7 2 1 9 9 C 1.50707 * 119.99739 * 5.51869 * 7 2 1 10 10 H 1.08997 * 109.47217 * 4.40170 * 9 7 2 11 11 C 1.53001 * 109.46943 * 244.40610 * 9 7 2 12 12 C 1.53776 * 113.61539 * 152.41281 * 11 9 7 13 13 C 1.53960 * 87.01763 * 220.04362 * 12 11 9 14 14 C 1.53777 * 113.61693 * 54.79816 * 11 9 7 15 15 C 1.52995 * 109.47366 * 124.40559 * 9 7 2 16 16 H 1.08996 * 110.85837 * 63.78437 * 15 9 7 17 17 C 1.54480 * 110.97056 * 187.62252 * 15 9 7 18 18 N 1.46766 * 105.47348 * 143.53146 * 17 15 9 19 19 C 1.34424 * 111.30188 * 342.98560 * 18 17 15 20 20 O 1.21278 * 124.94228 * 180.44739 * 19 18 17 21 21 C 1.51280 * 110.11203 * 0.40315 * 19 18 17 22 22 H 0.96995 * 119.99780 * 359.97438 * 1 2 3 23 23 H 1.09004 * 112.84745 * 283.60232 * 11 9 7 24 24 H 1.08994 * 113.61386 * 334.55891 * 12 11 9 25 25 H 1.09004 * 113.61893 * 105.46806 * 12 11 9 26 26 H 1.09000 * 113.53896 * 270.80793 * 13 12 11 27 27 H 1.09001 * 113.74150 * 139.94113 * 13 12 11 28 28 H 1.08997 * 113.61522 * 254.53021 * 14 11 9 29 29 H 1.09000 * 113.61351 * 25.43544 * 14 11 9 30 30 H 1.08995 * 110.24001 * 262.52954 * 17 15 9 31 31 H 1.08998 * 110.24781 * 24.52910 * 17 15 9 32 32 H 0.97002 * 124.34789 * 162.95412 * 18 17 15 33 33 H 1.09001 * 110.48689 * 257.57564 * 21 19 18 34 34 H 1.09004 * 110.59518 * 134.99162 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0808 -1.1963 0.0895 9 6 1.2563 -2.4961 -0.1266 10 1 0.1972 -2.2927 -0.2846 11 6 1.4331 -3.3122 1.1554 12 6 0.2637 -4.2684 1.4433 13 6 0.4097 -3.8724 2.9239 14 6 1.0267 -2.5533 2.4297 15 6 1.8064 -3.2875 -1.3149 16 1 2.8484 -3.5611 -1.1499 17 6 0.9430 -4.5378 -1.5937 18 7 0.9239 -4.6828 -3.0540 19 6 1.3082 -3.5474 -3.6625 20 8 1.3748 -3.3911 -4.8633 21 6 1.6447 -2.4928 -2.6314 22 1 -0.4849 0.8400 0.0004 23 1 2.4121 -3.7868 1.2234 24 1 -0.6791 -3.9516 0.9976 25 1 0.4963 -5.3147 1.2452 26 1 1.1082 -4.5014 3.4759 27 1 -0.5419 -3.7432 3.4395 28 1 1.8744 -2.2172 3.0268 29 1 0.2928 -1.7668 2.2541 30 1 1.3931 -5.4172 -1.1332 31 1 -0.0687 -4.3895 -1.2161 32 1 0.6673 -5.4938 -3.5202 33 1 0.8321 -1.7715 -2.5444 34 1 2.5758 -1.9879 -2.8891 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260518662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:10 Heat of formation + Delta-G solvation = -34.871277 kcal Electronic energy + Delta-G solvation = -15887.031186 eV Core-core repulsion = 13398.572804 eV Total energy + Delta-G solvation = -2488.458382 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72775 -38.01869 -35.76576 -33.24922 -31.21810 -28.16740 -26.63349 -24.61099 -24.18587 -22.08934 -19.85747 -19.31722 -18.45564 -16.79730 -16.53548 -15.39614 -14.64354 -14.43765 -14.27509 -13.77973 -13.12712 -12.88086 -12.38283 -12.12708 -12.00343 -11.50855 -11.43412 -10.99551 -10.85453 -10.79856 -10.52552 -10.35320 -9.80928 -9.60146 -9.53704 -9.02158 -8.87138 -8.80030 -8.60966 -8.40531 -6.06988 -4.07700 3.18316 3.30079 3.35976 3.39120 3.91477 4.40398 5.17897 5.21006 5.39832 5.48027 5.55649 5.64108 5.71891 5.93492 5.97630 6.09010 6.26622 6.32766 6.44832 6.48835 6.69139 6.74966 6.86202 6.91855 7.01429 7.19101 7.29935 7.33085 7.47796 7.59955 7.79907 7.89342 8.36928 8.78888 9.02092 9.55384 11.01576 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.018573 B = 0.013137 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.229825 B = 2130.876620 C = 3368.706543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.051 0.949 9 C 0.050 3.950 10 H 0.075 0.925 11 C -0.091 4.091 12 C -0.142 4.142 13 C -0.153 4.153 14 C -0.110 4.110 15 C -0.084 4.084 16 H 0.068 0.932 17 C 0.101 3.899 18 N -0.738 5.738 19 C 0.515 3.485 20 O -0.560 6.560 21 C -0.132 4.132 22 H 0.262 0.738 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.397 0.603 33 H 0.111 0.889 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 -7.731 2.432 8.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.131 4.131 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.031 3.969 10 H 0.093 0.907 11 C -0.110 4.110 12 C -0.179 4.179 13 C -0.191 4.191 14 C -0.147 4.147 15 C -0.103 4.103 16 H 0.086 0.914 17 C -0.023 4.023 18 N -0.392 5.392 19 C 0.303 3.697 20 O -0.439 6.439 21 C -0.172 4.172 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.234 0.766 33 H 0.129 0.871 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.436 -7.398 1.885 7.647 hybrid contribution 0.379 0.502 -0.047 0.631 sum 0.816 -6.896 1.838 7.183 Atomic orbital electron populations 1.69865 1.05786 1.26760 1.50580 1.24875 0.94733 0.98864 0.94608 0.86808 0.79813 0.83629 0.78699 1.20180 1.21445 1.20360 1.20866 0.93136 0.90119 1.49988 0.93034 1.19025 0.99463 0.91704 0.86688 0.90730 1.22619 0.95311 0.95278 0.97811 1.23089 1.00414 0.98250 0.96186 1.22932 0.99989 0.99692 0.96466 1.22653 1.00080 0.95546 0.96471 1.22429 0.98545 0.92427 0.96922 0.91371 1.22422 1.01371 0.99858 0.78676 1.46381 1.69152 1.14740 1.08977 1.21542 0.74598 0.84694 0.88850 1.90657 1.55246 1.82399 1.15571 1.22217 1.04804 0.96996 0.93169 0.92835 0.91932 0.90615 0.93390 0.91788 0.92941 0.93446 0.89069 0.91649 0.91136 0.76585 0.87052 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.41 12.63 55.43 0.70 -22.71 16 2 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 3 Si 0.88 20.18 29.54 -169.99 -5.02 15.16 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.50 -12.07 6.97 -34.44 -0.24 -12.31 16 8 H 0.05 1.26 7.82 -52.49 -0.41 0.85 16 9 C 0.05 1.05 1.35 -91.77 -0.12 0.92 16 10 H 0.07 1.77 6.56 -51.93 -0.34 1.43 16 11 C -0.09 -1.69 3.01 -89.81 -0.27 -1.96 16 12 C -0.14 -2.28 6.16 -25.83 -0.16 -2.44 16 13 C -0.15 -2.44 8.09 -25.82 -0.21 -2.65 16 14 C -0.11 -2.11 6.94 -25.92 -0.18 -2.29 16 15 C -0.08 -1.53 2.66 -88.99 -0.24 -1.77 16 16 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 17 C 0.10 1.55 6.27 -3.12 -0.02 1.53 16 18 N -0.74 -11.68 6.24 -59.20 -0.37 -12.04 16 19 C 0.51 10.02 8.43 -10.86 -0.09 9.93 16 20 O -0.56 -12.66 18.03 5.56 0.10 -12.56 16 21 C -0.13 -2.60 5.77 -26.74 -0.15 -2.76 16 22 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 23 H 0.06 1.13 8.13 -51.93 -0.42 0.70 16 24 H 0.08 1.28 7.77 -51.93 -0.40 0.88 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.09 2.02 8.10 -51.93 -0.42 1.59 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.10 7.07 -51.93 -0.37 0.73 16 32 H 0.40 5.28 8.96 -40.82 -0.37 4.92 16 33 H 0.11 2.44 7.90 -51.93 -0.41 2.03 16 34 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 276.48 15.07 4.17 4.17 Total: -1.00 -27.06 276.48 -7.44 -34.50 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.23 Total: 5.60 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -1.78 Total: -12.12 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.33 Total: -34.76 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.10 Total: -12.56 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.06 -7.44 -34.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.367 kcal (2) G-P(sol) polarization free energy of solvation -27.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds