Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00165 * 2 1 4 4 H 1.48498 * 109.47421 * 240.00484 * 3 2 1 5 5 H 1.48504 * 109.46679 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47155 * 119.99974 * 3 2 1 7 7 C 1.37879 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00380 * 185.52261 * 7 2 1 9 9 C 1.50707 * 119.99739 * 5.51869 * 7 2 1 10 10 H 1.08997 * 109.47217 * 4.40170 * 9 7 2 11 11 C 1.53001 * 109.46943 * 244.40610 * 9 7 2 12 12 C 1.53776 * 113.61539 * 152.41281 * 11 9 7 13 13 C 1.53960 * 87.01763 * 220.04362 * 12 11 9 14 14 C 1.53777 * 113.61693 * 54.79816 * 11 9 7 15 15 C 1.52995 * 109.47366 * 124.40559 * 9 7 2 16 16 H 1.08996 * 110.85837 * 63.78437 * 15 9 7 17 17 C 1.54480 * 110.97056 * 187.62252 * 15 9 7 18 18 N 1.46766 * 105.47348 * 143.53146 * 17 15 9 19 19 C 1.34424 * 111.30188 * 342.98560 * 18 17 15 20 20 O 1.21278 * 124.94228 * 180.44739 * 19 18 17 21 21 C 1.51280 * 110.11203 * 0.40315 * 19 18 17 22 22 H 0.96995 * 119.99780 * 359.97438 * 1 2 3 23 23 H 1.09004 * 112.84745 * 283.60232 * 11 9 7 24 24 H 1.08994 * 113.61386 * 334.55891 * 12 11 9 25 25 H 1.09004 * 113.61893 * 105.46806 * 12 11 9 26 26 H 1.09000 * 113.53896 * 270.80793 * 13 12 11 27 27 H 1.09001 * 113.74150 * 139.94113 * 13 12 11 28 28 H 1.08997 * 113.61522 * 254.53021 * 14 11 9 29 29 H 1.09000 * 113.61351 * 25.43544 * 14 11 9 30 30 H 1.08995 * 110.24001 * 262.52954 * 17 15 9 31 31 H 1.08998 * 110.24781 * 24.52910 * 17 15 9 32 32 H 0.97002 * 124.34789 * 162.95412 * 18 17 15 33 33 H 1.09001 * 110.48689 * 257.57564 * 21 19 18 34 34 H 1.09004 * 110.59518 * 134.99162 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0808 -1.1963 0.0895 9 6 1.2563 -2.4961 -0.1266 10 1 0.1972 -2.2927 -0.2846 11 6 1.4331 -3.3122 1.1554 12 6 0.2637 -4.2684 1.4433 13 6 0.4097 -3.8724 2.9239 14 6 1.0267 -2.5533 2.4297 15 6 1.8064 -3.2875 -1.3149 16 1 2.8484 -3.5611 -1.1499 17 6 0.9430 -4.5378 -1.5937 18 7 0.9239 -4.6828 -3.0540 19 6 1.3082 -3.5474 -3.6625 20 8 1.3748 -3.3911 -4.8633 21 6 1.6447 -2.4928 -2.6314 22 1 -0.4849 0.8400 0.0004 23 1 2.4121 -3.7868 1.2234 24 1 -0.6791 -3.9516 0.9976 25 1 0.4963 -5.3147 1.2452 26 1 1.1082 -4.5014 3.4759 27 1 -0.5419 -3.7432 3.4395 28 1 1.8744 -2.2172 3.0268 29 1 0.2928 -1.7668 2.2541 30 1 1.3931 -5.4172 -1.1332 31 1 -0.0687 -4.3895 -1.2161 32 1 0.6673 -5.4938 -3.5202 33 1 0.8321 -1.7715 -2.5444 34 1 2.5758 -1.9879 -2.8891 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260518662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = -51.511427 kcal Electronic energy + Delta-G solvation = -15887.752757 eV Core-core repulsion = 13398.572804 eV Total energy + Delta-G solvation = -2489.179953 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.23785 -39.49254 -37.30263 -35.00531 -32.88517 -29.76329 -28.17503 -26.07293 -25.79581 -23.58094 -21.37641 -20.86050 -19.88524 -18.39289 -18.27394 -16.91616 -16.46543 -15.86663 -15.78027 -15.30876 -14.74874 -14.34703 -13.94823 -13.71809 -13.55395 -13.09839 -12.95919 -12.75673 -12.53347 -12.37996 -12.18697 -12.00886 -11.27633 -11.10245 -11.06807 -10.73607 -10.61484 -10.41895 -10.12988 -9.97772 -8.01516 -6.03617 1.43487 1.47417 1.50830 1.61600 2.49258 2.57125 3.29764 3.69500 3.96457 4.07780 4.18217 4.25245 4.37335 4.46096 4.53065 4.82681 4.86052 5.02295 5.07094 5.19802 5.25552 5.26838 5.30876 5.38698 5.48257 5.68891 5.80626 5.83242 5.94793 5.98113 6.10992 6.20692 6.53049 7.13343 7.34432 7.60138 9.05954 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.018573 B = 0.013137 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.229825 B = 2130.876620 C = 3368.706543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.029 3.971 3 Si 0.923 3.077 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.500 4.500 8 H 0.045 0.955 9 C 0.053 3.947 10 H 0.043 0.957 11 C -0.093 4.093 12 C -0.129 4.129 13 C -0.138 4.138 14 C -0.123 4.123 15 C -0.081 4.081 16 H 0.079 0.921 17 C 0.108 3.892 18 N -0.716 5.716 19 C 0.515 3.485 20 O -0.595 6.595 21 C -0.132 4.132 22 H 0.256 0.744 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.415 0.585 33 H 0.082 0.918 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 -10.234 3.166 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.169 4.169 3 Si 0.751 3.249 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.034 3.966 10 H 0.061 0.939 11 C -0.112 4.112 12 C -0.167 4.167 13 C -0.175 4.175 14 C -0.161 4.161 15 C -0.100 4.100 16 H 0.098 0.902 17 C -0.015 4.015 18 N -0.370 5.370 19 C 0.303 3.697 20 O -0.477 6.477 21 C -0.172 4.172 22 H 0.065 0.935 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.255 0.745 33 H 0.101 0.899 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.042 -9.935 2.643 10.333 hybrid contribution 0.221 1.291 -0.242 1.331 sum 1.263 -8.644 2.401 9.060 Atomic orbital electron populations 1.69973 1.06687 1.26601 1.52600 1.25361 0.95185 1.01031 0.95338 0.86156 0.78810 0.81387 0.78544 1.20209 1.22001 1.20048 1.21188 0.92934 0.91659 1.48038 0.93667 1.18888 0.97158 0.91381 0.89199 0.93882 1.22572 0.97189 0.95745 0.95687 1.22964 0.98462 0.99361 0.95877 1.22880 1.00503 0.97355 0.96790 1.22605 0.99367 0.96387 0.97752 1.22287 0.99653 0.93321 0.94715 0.90220 1.22422 1.01159 0.99720 0.78190 1.46199 1.67363 1.14260 1.09195 1.21384 0.74747 0.85509 0.88097 1.90639 1.57100 1.83125 1.16886 1.22121 1.03391 0.97058 0.94672 0.93499 0.90452 0.91866 0.89993 0.89298 0.92363 0.93975 0.92933 0.87671 0.90946 0.74514 0.89930 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.92 12.63 21.45 0.27 -49.65 16 2 C 0.03 1.51 5.45 84.65 0.46 1.98 16 3 Si 0.92 42.14 29.54 68.60 2.03 44.17 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.50 -24.18 6.97 25.60 0.18 -24.00 16 8 H 0.05 2.21 7.82 -2.91 -0.02 2.18 16 9 C 0.05 2.17 1.35 -11.54 -0.02 2.16 16 10 H 0.04 2.06 6.56 -2.39 -0.02 2.05 16 11 C -0.09 -3.25 3.01 -10.27 -0.03 -3.28 16 12 C -0.13 -3.71 6.16 31.18 0.19 -3.52 16 13 C -0.14 -3.96 8.09 31.18 0.25 -3.71 16 14 C -0.12 -4.63 6.94 31.12 0.22 -4.42 16 15 C -0.08 -2.80 2.66 -9.74 -0.03 -2.83 16 16 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 17 C 0.11 2.94 6.27 86.83 0.54 3.48 16 18 N -0.72 -20.56 6.24 -459.81 -2.87 -23.42 16 19 C 0.51 19.49 8.43 87.90 0.74 20.23 16 20 O -0.60 -26.71 18.03 -3.02 -0.05 -26.76 16 21 C -0.13 -5.22 5.77 30.59 0.18 -5.04 16 22 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 23 H 0.08 2.50 8.13 -2.38 -0.02 2.48 16 24 H 0.06 1.99 7.77 -2.39 -0.02 1.97 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 2.38 8.10 -2.39 -0.02 2.36 16 30 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 2.02 7.07 -2.39 -0.02 2.01 16 32 H 0.42 9.54 8.96 -92.71 -0.83 8.71 16 33 H 0.08 3.75 7.90 -2.39 -0.02 3.74 16 34 H 0.08 3.39 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -59.59 276.48 2.32 -57.28 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.25 Total: 17.34 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 2.69 Total: -18.95 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -2.60 Total: -73.07 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -59.59 2.32 -57.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.767 kcal (2) G-P(sol) polarization free energy of solvation -59.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds