Wall clock time and date at job start Mon Mar 30 2020 02:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99885 * 2 1 4 4 H 1.48499 * 109.47180 * 270.00105 * 3 2 1 5 5 H 1.48497 * 109.46996 * 30.00311 * 3 2 1 6 6 H 1.48499 * 109.46626 * 150.00458 * 3 2 1 7 7 C 1.37876 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00269 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.46416 * 300.00161 * 9 7 2 11 11 C 1.52998 * 109.47337 * 59.99297 * 9 7 2 12 12 C 1.53781 * 113.61730 * 277.50240 * 11 9 7 13 13 C 1.53783 * 87.08022 * 220.01650 * 12 11 9 14 14 C 1.53775 * 113.61663 * 180.02562 * 11 9 7 15 15 C 1.52998 * 109.47442 * 179.97438 * 9 7 2 16 16 H 1.09002 * 110.85235 * 296.20787 * 15 9 7 17 17 C 1.54480 * 110.97046 * 59.99511 * 15 9 7 18 18 N 1.46763 * 105.47393 * 143.56963 * 17 15 9 19 19 C 1.34415 * 111.29894 * 343.25623 * 18 17 15 20 20 O 1.21281 * 124.94285 * 180.12105 * 19 18 17 21 21 C 1.51280 * 110.12156 * 359.97438 * 19 18 17 22 22 H 0.96996 * 119.99846 * 359.97438 * 1 2 3 23 23 H 1.09001 * 112.84620 * 48.81121 * 11 9 7 24 24 H 1.08992 * 113.61423 * 334.57070 * 12 11 9 25 25 H 1.09007 * 113.61329 * 105.47231 * 12 11 9 26 26 H 1.09004 * 113.61467 * 270.88179 * 13 12 11 27 27 H 1.08994 * 113.61140 * 139.98413 * 13 12 11 28 28 H 1.08992 * 113.61891 * 254.53384 * 14 11 9 29 29 H 1.09001 * 113.61489 * 25.35265 * 14 11 9 30 30 H 1.09006 * 110.24508 * 24.57525 * 17 15 9 31 31 H 1.09000 * 110.24518 * 262.57513 * 17 15 9 32 32 H 0.97001 * 124.34660 * 162.97922 * 18 17 15 33 33 H 1.08999 * 110.70584 * 257.90978 * 21 19 18 34 34 H 1.08996 * 110.44717 * 135.27393 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6241 -2.5575 0.8880 11 6 0.3718 -2.5794 -1.2512 12 6 -0.9700 -1.8418 -1.1087 13 6 -1.6077 -3.0188 -1.8656 14 6 -0.4436 -3.8796 -1.3483 15 6 2.2453 -3.6621 -0.0027 16 1 2.8393 -3.6639 -0.9166 17 6 3.1528 -3.6147 1.2465 18 7 3.3657 -5.0155 1.6292 19 6 2.4617 -5.8231 1.0484 20 8 2.4087 -7.0258 1.1956 21 6 1.5177 -5.0133 0.1872 22 1 -0.4850 0.8400 0.0004 23 1 0.9120 -2.3333 -2.1654 24 1 -1.3104 -1.7501 -0.0774 25 1 -1.0100 -0.8989 -1.6542 26 1 -1.6098 -2.8920 -2.9483 27 1 -2.5793 -3.3163 -1.4714 28 1 -0.0586 -4.5824 -2.0871 29 1 -0.6390 -4.3456 -0.3825 30 1 2.6566 -3.0747 2.0529 31 1 4.1041 -3.1412 1.0038 32 1 4.0708 -5.3199 2.2217 33 1 0.5643 -4.8653 0.6944 34 1 1.3651 -5.5028 -0.7747 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260518670.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:17 Heat of formation + Delta-G solvation = -31.741542 kcal Electronic energy + Delta-G solvation = -16001.884176 eV Core-core repulsion = 13513.561510 eV Total energy + Delta-G solvation = -2488.322666 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.33959 -39.49378 -37.29225 -34.81429 -33.11087 -29.98499 -27.75958 -26.16751 -25.84201 -23.43750 -21.37958 -20.95593 -19.80010 -18.62253 -17.99372 -16.93211 -16.32261 -15.83894 -15.69536 -15.40875 -14.72023 -14.13458 -14.01705 -13.96045 -13.75024 -12.89744 -12.80253 -12.67125 -12.31421 -12.18551 -12.11635 -11.94971 -11.45752 -11.40045 -10.94540 -10.83668 -10.31274 -10.09709 -10.03539 -9.98163 -7.81444 -6.01000 1.47235 1.52366 1.57153 1.62459 2.53029 2.56445 3.34704 3.63239 3.88475 4.06289 4.28696 4.33897 4.39877 4.44689 4.73676 4.78878 4.85758 5.04602 5.08427 5.10093 5.23260 5.31177 5.37581 5.46820 5.61132 5.87892 5.91854 5.96848 5.99432 6.10398 6.14462 6.29109 6.53488 7.05011 7.33900 7.63354 9.07545 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.010834 C = 0.007921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.576298 B = 2583.733061 C = 3533.885193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.020 3.980 3 Si 0.935 3.065 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.070 3.930 10 H 0.007 0.993 11 C -0.085 4.085 12 C -0.054 4.054 13 C -0.168 4.168 14 C -0.135 4.135 15 C -0.078 4.078 16 H 0.079 0.921 17 C 0.117 3.883 18 N -0.720 5.720 19 C 0.513 3.487 20 O -0.592 6.592 21 C -0.146 4.146 22 H 0.253 0.747 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.413 0.587 33 H 0.105 0.895 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.464 -4.199 -0.480 4.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.052 3.948 10 H 0.025 0.975 11 C -0.104 4.104 12 C -0.093 4.093 13 C -0.206 4.206 14 C -0.172 4.172 15 C -0.097 4.097 16 H 0.098 0.902 17 C -0.007 4.007 18 N -0.373 5.373 19 C 0.301 3.699 20 O -0.474 6.474 21 C -0.186 4.186 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.253 0.747 33 H 0.123 0.877 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.220 -4.606 -0.456 5.134 hybrid contribution 0.627 1.254 0.254 1.424 sum 2.847 -3.353 -0.202 4.403 Atomic orbital electron populations 1.70393 1.06214 1.25565 1.50746 1.25549 0.95580 1.01192 0.95624 0.85924 0.79044 0.81260 0.77444 1.21342 1.22135 1.19444 1.21430 0.93106 0.91399 1.50118 0.92365 1.18613 0.91953 0.90911 0.93345 0.97478 1.22300 0.95498 0.94598 0.97982 1.22314 0.95080 0.93520 0.98338 1.23245 0.97661 0.99980 0.99698 1.23155 0.97119 0.96451 1.00521 1.22094 0.96730 0.93671 0.97232 0.90234 1.22128 1.00882 0.80144 0.97545 1.46317 1.32790 1.09277 1.48950 1.21428 0.82194 0.86280 0.79949 1.90661 1.74967 1.15375 1.66400 1.22689 0.98773 0.96165 1.00937 0.93720 0.93197 0.92261 0.94909 0.91306 0.92406 0.91719 0.90324 0.91242 0.89398 0.74749 0.87694 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.63 8.18 21.45 0.18 -45.45 16 2 C 0.02 1.00 5.30 84.65 0.45 1.45 16 3 Si 0.93 40.31 29.54 68.60 2.03 42.34 16 4 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.52 -24.51 8.04 25.60 0.21 -24.30 16 8 H 0.06 2.65 7.48 -2.91 -0.02 2.63 16 9 C 0.07 2.94 1.22 -11.54 -0.01 2.92 16 10 H 0.01 0.33 7.86 -2.39 -0.02 0.32 16 11 C -0.08 -3.45 2.98 -10.27 -0.03 -3.48 16 12 C -0.05 -2.33 5.00 31.12 0.16 -2.17 16 13 C -0.17 -5.83 8.08 31.11 0.25 -5.58 16 14 C -0.14 -4.55 5.47 31.10 0.17 -4.37 16 15 C -0.08 -2.64 2.62 -9.74 -0.03 -2.66 16 16 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 17 C 0.12 3.52 6.51 86.83 0.57 4.08 16 18 N -0.72 -20.42 6.24 -459.81 -2.87 -23.29 16 19 C 0.51 17.29 8.43 87.90 0.74 18.03 16 20 O -0.59 -23.84 18.03 -3.03 -0.05 -23.89 16 21 C -0.15 -4.59 4.50 30.59 0.14 -4.46 16 22 H 0.25 12.78 8.31 -92.71 -0.77 12.01 16 23 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.06 2.81 7.12 -2.39 -0.02 2.79 16 25 H 0.03 1.54 7.11 -2.38 -0.02 1.52 16 26 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 1.93 7.67 -2.39 -0.02 1.92 16 29 H 0.08 2.57 5.75 -2.39 -0.01 2.56 16 30 H 0.07 2.26 7.89 -2.38 -0.02 2.24 16 31 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.41 9.73 8.96 -92.71 -0.83 8.90 16 33 H 0.11 3.35 5.99 -2.39 -0.01 3.34 16 34 H 0.11 3.09 7.10 -2.39 -0.02 3.08 16 Total: -1.00 -55.01 263.39 2.15 -52.86 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.27 Total: 17.98 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 2.61 Total: -20.54 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -2.69 Total: -68.74 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -55.01 2.15 -52.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518670.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.115 kcal (2) G-P(sol) polarization free energy of solvation -55.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds