Wall clock time and date at job start Mon Mar 30 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 N 1.28640 * 122.93782 * 359.97438 * 10 9 7 12 12 C 1.47603 * 108.54392 * 180.38722 * 11 10 9 13 13 H 1.08996 * 110.94279 * 256.76185 * 12 11 10 14 14 C 1.53007 * 110.94142 * 133.10558 * 12 11 10 15 15 C 1.54263 * 110.02770 * 178.61875 * 14 12 11 16 16 C 1.54895 * 104.19548 * 217.10063 * 15 14 12 17 17 C 1.54896 * 102.74416 * 37.94446 * 16 15 14 18 18 C 1.53873 * 110.03360 * 61.45004 * 14 12 11 19 19 C 1.54842 * 101.89660 * 14.95121 * 12 11 10 20 20 O 1.34596 * 122.93829 * 179.70776 * 10 9 7 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09000 * 110.01672 * 300.05478 * 14 12 11 25 25 H 1.09000 * 110.49314 * 335.78157 * 15 14 12 26 26 H 1.09002 * 110.48841 * 98.42345 * 15 14 12 27 27 H 1.08993 * 110.75606 * 279.63274 * 16 15 14 28 28 H 1.09000 * 110.75519 * 156.25787 * 16 15 14 29 29 H 1.08998 * 110.48252 * 203.37796 * 17 16 15 30 30 H 1.08997 * 110.48713 * 80.73586 * 17 16 15 31 31 H 1.09000 * 110.02909 * 238.56369 * 18 14 12 32 32 H 1.09002 * 110.03290 * 359.95245 * 18 14 12 33 33 H 1.09004 * 111.07868 * 94.73690 * 19 12 11 34 34 H 1.09005 * 111.07811 * 218.73313 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 7 3.5053 -3.4748 0.0001 12 6 4.1555 -4.7999 -0.0092 13 1 4.5376 -5.0533 0.9796 14 6 5.2717 -4.8540 -1.0543 15 6 5.9589 -6.2348 -1.0223 16 6 7.4537 -5.9212 -1.2798 17 6 7.6655 -4.6009 -0.4980 18 6 6.3567 -3.8151 -0.7209 19 6 2.9814 -5.7287 -0.4047 20 8 1.8472 -4.9350 0.0063 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 4.8634 -4.6623 -2.0466 25 1 5.8299 -6.7027 -0.0463 26 1 5.5627 -6.8765 -1.8093 27 1 7.6399 -5.7743 -2.3436 28 1 8.0886 -6.7124 -0.8809 29 1 8.5147 -4.0502 -0.9025 30 1 7.8120 -4.8048 0.5626 31 1 6.4757 -3.1198 -1.5519 32 1 6.0877 -3.2718 0.1849 33 1 2.9689 -5.9088 -1.4796 34 1 3.0213 -6.6678 0.1474 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260551883.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:52 Heat of formation + Delta-G solvation = -34.721424 kcal Electronic energy + Delta-G solvation = -15326.733598 eV Core-core repulsion = 12838.281714 eV Total energy + Delta-G solvation = -2488.451884 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60215 -37.85146 -33.54920 -32.82313 -31.07813 -28.66757 -28.20866 -26.60596 -23.43696 -22.23231 -20.64012 -19.59124 -19.12016 -16.52256 -15.97407 -15.84398 -15.44579 -14.62726 -14.50676 -14.20005 -13.23888 -12.72439 -12.58435 -12.35926 -12.26639 -11.75076 -11.08334 -11.03559 -10.96802 -10.91577 -10.75471 -10.66966 -10.57090 -10.43163 -10.22015 -9.87624 -9.50391 -8.93467 -8.51435 -8.20522 -6.02712 -4.02217 3.07450 3.36718 3.42071 3.48417 4.01985 4.50393 4.55550 4.70702 4.78388 4.98734 5.18219 5.31032 5.35824 5.44930 5.55361 5.62722 5.66796 5.68870 5.77955 5.85453 5.87974 5.98731 6.16975 6.18562 6.37751 6.52162 6.60868 6.67498 7.20716 7.34792 7.38577 8.01996 8.20115 8.77374 9.10214 9.61546 11.09754 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031334 B = 0.007345 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.375487 B = 3811.379449 C = 4604.096428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.902 3.098 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.082 0.918 9 C 0.083 3.917 10 C 0.321 3.679 11 N -0.529 5.529 12 C 0.023 3.977 13 H 0.084 0.916 14 C -0.070 4.070 15 C -0.122 4.122 16 C -0.123 4.123 17 C -0.127 4.127 18 C -0.110 4.110 19 C 0.019 3.981 20 O -0.358 6.358 21 H 0.262 0.738 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.002 -11.574 -1.911 16.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.730 3.270 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.100 0.900 9 C 0.046 3.954 10 C 0.097 3.903 11 N -0.265 5.265 12 C -0.087 4.087 13 H 0.102 0.898 14 C -0.089 4.089 15 C -0.160 4.160 16 C -0.161 4.161 17 C -0.164 4.164 18 C -0.148 4.148 19 C -0.058 4.058 20 O -0.262 6.262 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.328 -10.955 -1.841 15.866 hybrid contribution 0.092 0.040 -0.054 0.114 sum 11.421 -10.915 -1.895 15.911 Atomic orbital electron populations 1.69963 1.06061 1.26928 1.51124 1.25006 0.94880 0.99443 0.95350 0.86414 0.79799 0.82695 0.78064 1.20721 1.21372 1.19667 1.21184 0.94521 0.88599 1.50104 0.89982 1.18194 0.91369 0.86189 0.99652 1.26982 0.93465 0.84098 0.85763 1.75001 1.05378 1.19723 1.26386 1.23728 0.95699 0.90134 0.99164 0.89766 1.21622 0.94608 0.94611 0.98058 1.22466 0.95369 0.96689 1.01447 1.22475 0.96044 0.97393 1.00185 1.22411 0.98010 0.96070 0.99920 1.22044 0.92699 0.97282 1.02782 1.24536 0.85111 0.95682 1.00480 1.87020 1.38743 1.18213 1.82272 0.92873 0.93079 0.93063 0.91118 0.91606 0.91886 0.91687 0.91969 0.92061 0.91972 0.91978 0.90467 0.90789 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.30 8.95 -34.44 -0.31 -14.61 16 8 H 0.08 2.35 6.76 -52.49 -0.36 2.00 16 9 C 0.08 2.18 5.60 -29.03 -0.16 2.02 16 10 C 0.32 7.42 7.67 -13.61 -0.10 7.31 16 11 N -0.53 -11.70 9.40 -50.61 -0.48 -12.18 16 12 C 0.02 0.39 2.90 -66.35 -0.19 0.20 16 13 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 14 C -0.07 -1.01 2.62 -89.50 -0.23 -1.25 16 15 C -0.12 -1.35 6.04 -25.07 -0.15 -1.50 16 16 C -0.12 -1.26 6.91 -24.73 -0.17 -1.43 16 17 C -0.13 -1.46 6.83 -25.07 -0.17 -1.63 16 18 C -0.11 -1.61 6.25 -25.61 -0.16 -1.77 16 19 C 0.02 0.30 7.42 38.13 0.28 0.59 16 20 O -0.36 -7.38 11.18 -15.57 -0.17 -7.55 16 21 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 23 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 25 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.30 7.46 -51.93 -0.39 0.91 16 33 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 279.09 15.07 4.21 4.21 Total: -1.00 -29.78 279.09 -7.54 -37.32 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.34 Total: -2.30 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.47 Total: -10.64 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.26 Total: -37.97 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.17 Total: -7.55 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.78 -7.54 -37.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260551883.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.594 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds