Wall clock time and date at job start Mon Mar 30 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 N 1.28640 * 122.93782 * 359.97438 * 10 9 7 12 12 C 1.47603 * 108.54392 * 180.38722 * 11 10 9 13 13 H 1.08996 * 110.94279 * 256.76185 * 12 11 10 14 14 C 1.53007 * 110.94142 * 133.10558 * 12 11 10 15 15 C 1.54263 * 110.02770 * 178.61875 * 14 12 11 16 16 C 1.54895 * 104.19548 * 217.10063 * 15 14 12 17 17 C 1.54896 * 102.74416 * 37.94446 * 16 15 14 18 18 C 1.53873 * 110.03360 * 61.45004 * 14 12 11 19 19 C 1.54842 * 101.89660 * 14.95121 * 12 11 10 20 20 O 1.34596 * 122.93829 * 179.70776 * 10 9 7 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09000 * 110.01672 * 300.05478 * 14 12 11 25 25 H 1.09000 * 110.49314 * 335.78157 * 15 14 12 26 26 H 1.09002 * 110.48841 * 98.42345 * 15 14 12 27 27 H 1.08993 * 110.75606 * 279.63274 * 16 15 14 28 28 H 1.09000 * 110.75519 * 156.25787 * 16 15 14 29 29 H 1.08998 * 110.48252 * 203.37796 * 17 16 15 30 30 H 1.08997 * 110.48713 * 80.73586 * 17 16 15 31 31 H 1.09000 * 110.02909 * 238.56369 * 18 14 12 32 32 H 1.09002 * 110.03290 * 359.95245 * 18 14 12 33 33 H 1.09004 * 111.07868 * 94.73690 * 19 12 11 34 34 H 1.09005 * 111.07811 * 218.73313 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 7 3.5053 -3.4748 0.0001 12 6 4.1555 -4.7999 -0.0092 13 1 4.5376 -5.0533 0.9796 14 6 5.2717 -4.8540 -1.0543 15 6 5.9589 -6.2348 -1.0223 16 6 7.4537 -5.9212 -1.2798 17 6 7.6655 -4.6009 -0.4980 18 6 6.3567 -3.8151 -0.7209 19 6 2.9814 -5.7287 -0.4047 20 8 1.8472 -4.9350 0.0063 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 4.8634 -4.6623 -2.0466 25 1 5.8299 -6.7027 -0.0463 26 1 5.5627 -6.8765 -1.8093 27 1 7.6399 -5.7743 -2.3436 28 1 8.0886 -6.7124 -0.8809 29 1 8.5147 -4.0502 -0.9025 30 1 7.8120 -4.8048 0.5626 31 1 6.4757 -3.1198 -1.5519 32 1 6.0877 -3.2718 0.1849 33 1 2.9689 -5.9088 -1.4796 34 1 3.0213 -6.6678 0.1474 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260551883.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:52 Heat of formation + Delta-G solvation = -54.740806 kcal Electronic energy + Delta-G solvation = -15327.601703 eV Core-core repulsion = 12838.281714 eV Total energy + Delta-G solvation = -2489.319989 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.13568 -38.93112 -35.57927 -34.39351 -32.78261 -30.05024 -29.47779 -27.97920 -25.49324 -23.54400 -21.66262 -20.98479 -20.51685 -18.36400 -17.75147 -17.26989 -16.67775 -16.36767 -15.92314 -15.52827 -14.45016 -14.27425 -14.14947 -13.92772 -13.83043 -13.35487 -12.84746 -12.71600 -12.36719 -12.21683 -11.90887 -11.90594 -11.86348 -11.62980 -11.51726 -11.47595 -11.34535 -10.72264 -10.62174 -9.88973 -8.21466 -6.28389 1.33121 1.42958 1.44167 1.56459 2.35896 2.60004 3.14451 3.24754 3.61472 3.72148 3.89270 3.94690 4.08436 4.32351 4.49390 4.51452 4.58915 4.67552 4.76232 4.84279 4.89082 4.99685 5.11688 5.13436 5.16286 5.24301 5.28183 5.39296 5.48596 5.51805 5.53176 5.81375 6.08487 6.83989 7.09187 7.39567 8.91687 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031334 B = 0.007345 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.375487 B = 3811.379449 C = 4604.096428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.521 4.521 8 H 0.074 0.926 9 C 0.088 3.912 10 C 0.309 3.691 11 N -0.549 5.549 12 C 0.020 3.980 13 H 0.092 0.908 14 C -0.068 4.068 15 C -0.114 4.114 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.115 4.115 19 C 0.019 3.981 20 O -0.370 6.370 21 H 0.266 0.734 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.895 -12.826 -2.178 18.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.559 4.559 8 H 0.092 0.908 9 C 0.050 3.950 10 C 0.084 3.916 11 N -0.285 5.285 12 C -0.089 4.089 13 H 0.110 0.890 14 C -0.087 4.087 15 C -0.152 4.152 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.057 4.057 20 O -0.275 6.275 21 H 0.075 0.925 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.229 -12.229 -2.112 18.139 hybrid contribution -0.464 0.377 0.034 0.599 sum 12.765 -11.852 -2.078 17.542 Atomic orbital electron populations 1.70067 1.07450 1.28036 1.51641 1.25854 0.95757 1.02933 0.94758 0.85383 0.78459 0.78377 0.78416 1.19843 1.20406 1.19435 1.21384 0.94297 0.89888 1.50360 0.90772 1.17865 0.91686 0.87404 0.98030 1.26263 0.93210 0.84533 0.87608 1.74913 1.05267 1.23570 1.24706 1.23907 0.96551 0.87886 1.00564 0.88984 1.21642 0.93797 0.97024 0.96272 1.22451 0.95552 0.94452 1.02747 1.22475 0.95648 0.96980 1.00395 1.22385 0.96332 0.96554 1.00652 1.22041 0.94850 0.97516 1.00849 1.24875 0.82723 0.96025 1.02076 1.86975 1.40749 1.17362 1.82434 0.92513 0.94932 0.94768 0.92466 0.90543 0.90204 0.91200 0.89745 0.91151 0.91514 0.93182 0.93355 0.89361 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 2 C 0.00 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.52 -30.29 8.95 25.60 0.23 -30.06 16 8 H 0.07 4.35 6.76 -2.91 -0.02 4.33 16 9 C 0.09 4.78 5.60 29.10 0.16 4.95 16 10 C 0.31 14.59 7.67 88.58 0.68 15.27 16 11 N -0.55 -24.55 9.40 -429.28 -4.04 -28.58 16 12 C 0.02 0.67 2.90 45.41 0.13 0.80 16 13 H 0.09 2.88 8.10 -2.39 -0.02 2.86 16 14 C -0.07 -1.87 2.62 -10.07 -0.03 -1.90 16 15 C -0.11 -2.13 6.04 31.67 0.19 -1.94 16 16 C -0.12 -1.97 6.91 31.89 0.22 -1.75 16 17 C -0.12 -2.52 6.83 31.67 0.22 -2.31 16 18 C -0.11 -3.28 6.25 31.32 0.20 -3.08 16 19 C 0.02 0.56 7.42 72.61 0.54 1.10 16 20 O -0.37 -15.18 11.18 -78.61 -0.88 -16.06 16 21 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 22 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.03 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.06 1.71 8.09 -2.39 -0.02 1.69 16 25 H 0.08 1.30 7.83 -2.39 -0.02 1.28 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.64 7.46 -2.39 -0.02 1.62 16 33 H 0.09 2.37 7.88 -2.39 -0.02 2.35 16 34 H 0.13 2.94 8.14 -2.38 -0.02 2.92 16 Total: -1.00 -65.13 279.09 1.46 -63.67 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.06 Total: 7.27 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 3.00 Total: -18.18 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -3.75 Total: -84.10 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.88 Total: -16.06 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -65.13 1.46 -63.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260551883.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.931 kcal (2) G-P(sol) polarization free energy of solvation -65.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds