Wall clock time and date at job start Mon Mar 30 2020 02:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 N 1.28640 * 122.93782 * 359.97438 * 10 9 7 12 12 C 1.47603 * 108.54514 * 179.57178 * 11 10 9 13 13 H 1.09004 * 110.94710 * 103.23425 * 12 11 10 14 14 C 1.53002 * 110.94252 * 226.89730 * 12 11 10 15 15 C 1.54262 * 110.03254 * 56.45406 * 14 12 11 16 16 C 1.54966 * 104.15842 * 217.13650 * 15 14 12 17 17 C 1.54888 * 102.77907 * 37.89111 * 16 15 14 18 18 C 1.53875 * 110.02929 * 299.23653 * 14 12 11 19 19 C 1.54844 * 101.89602 * 345.04506 * 12 11 10 20 20 O 1.34596 * 122.93829 * 179.70776 * 10 9 7 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09000 * 110.01321 * 177.84895 * 14 12 11 25 25 H 1.09002 * 110.48805 * 335.78014 * 15 14 12 26 26 H 1.08994 * 110.48951 * 98.42985 * 15 14 12 27 27 H 1.08997 * 110.72489 * 279.57045 * 16 15 14 28 28 H 1.09008 * 110.92379 * 156.29665 * 16 15 14 29 29 H 1.09003 * 110.48959 * 203.40599 * 17 16 15 30 30 H 1.08999 * 110.60149 * 80.81577 * 17 16 15 31 31 H 1.09004 * 110.03404 * 238.57064 * 18 14 12 32 32 H 1.08998 * 110.03375 * 359.94980 * 18 14 12 33 33 H 1.09004 * 111.08212 * 141.22394 * 19 12 11 34 34 H 1.08999 * 111.08086 * 265.26345 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 7 3.5053 -3.4748 0.0001 12 6 4.1555 -4.7998 0.0107 13 1 4.5370 -5.0547 -0.9781 14 6 5.2723 -4.8527 1.0552 15 6 4.7117 -4.4938 2.4468 16 6 5.8468 -3.6759 3.1133 17 6 6.4049 -2.8407 1.9343 18 6 6.3487 -3.8024 0.7294 19 6 2.9816 -5.7282 0.4081 20 8 1.8472 -4.9350 0.0063 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 5.7162 -5.8480 1.0767 25 1 3.8109 -3.8876 2.3505 26 1 4.5050 -5.3978 3.0195 27 1 6.6140 -4.3375 3.5153 28 1 5.4515 -3.0260 3.8940 29 1 7.4332 -2.5388 2.1337 30 1 5.7798 -1.9662 1.7540 31 1 7.3152 -4.2879 0.5937 32 1 6.0759 -3.2557 -0.1732 33 1 3.0208 -6.6677 -0.1432 34 1 2.9698 -5.9069 1.4832 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260551884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:55 Heat of formation + Delta-G solvation = -31.723735 kcal Electronic energy + Delta-G solvation = -15706.328959 eV Core-core repulsion = 13218.007065 eV Total energy + Delta-G solvation = -2488.321894 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.70057 -37.58672 -33.53917 -32.71896 -31.06511 -28.47662 -28.21329 -26.53943 -23.43327 -22.41427 -20.37979 -19.48659 -18.97339 -16.42258 -15.97195 -15.76695 -15.30064 -14.78452 -14.46013 -13.75162 -13.22061 -13.00410 -12.45257 -12.35643 -12.15391 -11.54526 -11.10339 -10.81333 -10.78677 -10.75492 -10.69557 -10.56692 -10.52030 -10.36097 -10.07849 -9.86084 -9.48583 -8.91783 -8.50122 -8.17963 -6.02702 -4.02056 3.09120 3.36454 3.41935 3.47728 4.03832 4.51784 4.66522 4.83080 4.94098 5.08034 5.28185 5.33597 5.36360 5.54322 5.60707 5.72599 5.80388 5.91786 5.95287 6.02246 6.09211 6.23674 6.24951 6.35627 6.53092 6.57929 6.71521 6.79042 7.21847 7.35838 7.38706 8.02044 8.20432 8.78738 9.10453 9.61656 11.09777 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.009533 C = 0.007565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.967966 B = 2936.442794 C = 3700.586010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.504 4.504 8 H 0.082 0.918 9 C 0.084 3.916 10 C 0.319 3.681 11 N -0.521 5.521 12 C 0.020 3.980 13 H 0.083 0.917 14 C -0.071 4.071 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.109 4.109 19 C 0.017 3.983 20 O -0.358 6.358 21 H 0.261 0.739 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.600 -9.605 3.359 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.729 3.271 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.542 4.542 8 H 0.100 0.900 9 C 0.046 3.954 10 C 0.095 3.905 11 N -0.257 5.257 12 C -0.090 4.090 13 H 0.101 0.899 14 C -0.090 4.090 15 C -0.158 4.158 16 C -0.158 4.158 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.060 4.060 20 O -0.262 6.262 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.939 -8.999 3.297 13.807 hybrid contribution 0.126 -0.023 -0.030 0.132 sum 10.065 -9.022 3.267 13.906 Atomic orbital electron populations 1.69963 1.06058 1.26899 1.51161 1.25001 0.94862 0.99412 0.95394 0.86430 0.79793 0.82769 0.78071 1.20735 1.21424 1.19663 1.21172 0.94499 0.88544 1.50015 0.89956 1.18181 0.91369 0.86212 0.99589 1.26983 0.93483 0.84029 0.86009 1.74971 1.05198 1.19528 1.25999 1.23693 0.95936 0.90303 0.99096 0.89880 1.21604 0.94683 0.98585 0.94106 1.22462 0.99459 0.99272 0.94640 1.22427 0.97463 0.98229 0.97664 1.22290 1.00019 0.98957 0.94456 1.22018 0.96553 0.96439 0.99629 1.24524 0.85160 0.95625 1.00737 1.86954 1.38387 1.18290 1.82614 0.92895 0.93126 0.93197 0.91421 0.90452 0.92697 0.92396 0.91905 0.92710 0.90645 0.93097 0.90611 0.88765 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.50 -14.06 8.95 -34.44 -0.31 -14.36 16 8 H 0.08 2.32 6.76 -52.49 -0.36 1.97 16 9 C 0.08 2.17 5.60 -29.03 -0.16 2.01 16 10 C 0.32 7.23 7.61 -13.61 -0.10 7.13 16 11 N -0.52 -11.18 8.36 -50.61 -0.42 -11.60 16 12 C 0.02 0.33 3.35 -66.35 -0.22 0.11 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 14 C -0.07 -1.02 2.96 -89.50 -0.26 -1.29 16 15 C -0.12 -1.79 4.91 -25.03 -0.12 -1.91 16 16 C -0.12 -1.64 6.91 -24.70 -0.17 -1.81 16 17 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 18 C -0.11 -1.59 6.24 -25.61 -0.16 -1.74 16 19 C 0.02 0.26 7.50 38.13 0.29 0.55 16 20 O -0.36 -7.29 11.16 -15.57 -0.17 -7.47 16 21 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 22 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 23 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 1.41 6.95 -51.93 -0.36 1.05 16 26 H 0.05 0.71 7.97 -51.93 -0.41 0.29 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.26 7.44 -51.93 -0.39 0.88 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.12 6.65 -51.93 -0.35 0.77 16 LS Contribution 275.49 15.07 4.15 4.15 Total: -1.00 -29.21 275.49 -7.45 -36.66 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.22 Total: -1.07 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -1.50 Total: -11.83 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.31 Total: -37.26 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.17 Total: -7.47 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.21 -7.45 -36.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260551884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.939 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds