Wall clock time and date at job start Mon Mar 30 2020 02:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 N 1.28640 * 122.93782 * 359.97438 * 10 9 7 12 12 C 1.47603 * 108.54514 * 179.57178 * 11 10 9 13 13 H 1.09004 * 110.94710 * 103.23425 * 12 11 10 14 14 C 1.53002 * 110.94252 * 226.89730 * 12 11 10 15 15 C 1.54262 * 110.03254 * 56.45406 * 14 12 11 16 16 C 1.54966 * 104.15842 * 217.13650 * 15 14 12 17 17 C 1.54888 * 102.77907 * 37.89111 * 16 15 14 18 18 C 1.53875 * 110.02929 * 299.23653 * 14 12 11 19 19 C 1.54844 * 101.89602 * 345.04506 * 12 11 10 20 20 O 1.34596 * 122.93829 * 179.70776 * 10 9 7 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09000 * 110.01321 * 177.84895 * 14 12 11 25 25 H 1.09002 * 110.48805 * 335.78014 * 15 14 12 26 26 H 1.08994 * 110.48951 * 98.42985 * 15 14 12 27 27 H 1.08997 * 110.72489 * 279.57045 * 16 15 14 28 28 H 1.09008 * 110.92379 * 156.29665 * 16 15 14 29 29 H 1.09003 * 110.48959 * 203.40599 * 17 16 15 30 30 H 1.08999 * 110.60149 * 80.81577 * 17 16 15 31 31 H 1.09004 * 110.03404 * 238.57064 * 18 14 12 32 32 H 1.08998 * 110.03375 * 359.94980 * 18 14 12 33 33 H 1.09004 * 111.08212 * 141.22394 * 19 12 11 34 34 H 1.08999 * 111.08086 * 265.26345 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 7 3.5053 -3.4748 0.0001 12 6 4.1555 -4.7998 0.0107 13 1 4.5370 -5.0547 -0.9781 14 6 5.2723 -4.8527 1.0552 15 6 4.7117 -4.4938 2.4468 16 6 5.8468 -3.6759 3.1133 17 6 6.4049 -2.8407 1.9343 18 6 6.3487 -3.8024 0.7294 19 6 2.9816 -5.7282 0.4081 20 8 1.8472 -4.9350 0.0063 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 5.7162 -5.8480 1.0767 25 1 3.8109 -3.8876 2.3505 26 1 4.5050 -5.3978 3.0195 27 1 6.6140 -4.3375 3.5153 28 1 5.4515 -3.0260 3.8940 29 1 7.4332 -2.5388 2.1337 30 1 5.7798 -1.9662 1.7540 31 1 7.3152 -4.2879 0.5937 32 1 6.0759 -3.2557 -0.1732 33 1 3.0208 -6.6677 -0.1432 34 1 2.9698 -5.9069 1.4832 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260551884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:54 Heat of formation + Delta-G solvation = -51.013438 kcal Electronic energy + Delta-G solvation = -15707.165423 eV Core-core repulsion = 13218.007065 eV Total energy + Delta-G solvation = -2489.158358 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.19911 -38.79840 -35.56361 -34.28426 -32.77946 -29.94293 -29.61042 -27.93707 -25.48169 -23.72082 -21.56915 -21.10190 -20.27846 -18.29002 -17.66035 -17.32414 -16.45169 -16.33265 -16.21788 -15.25137 -14.55696 -14.38249 -14.23233 -14.07740 -13.50447 -13.34074 -12.84726 -12.67172 -12.38437 -12.04725 -11.94632 -11.88801 -11.81813 -11.76159 -11.51375 -11.39933 -11.23293 -10.65131 -10.61276 -9.81009 -8.20636 -6.26974 1.38327 1.42705 1.43870 1.55800 2.37224 2.63231 3.15464 3.32348 3.60501 3.74674 3.89604 3.97609 4.13115 4.37439 4.46756 4.56432 4.65924 4.75557 4.79165 4.89138 4.90913 5.00113 5.08297 5.10729 5.16204 5.25360 5.29243 5.36798 5.49842 5.58478 5.63914 5.82739 6.10095 6.85737 7.14130 7.40792 8.92591 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.009533 C = 0.007565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.967966 B = 2936.442794 C = 3700.586010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.516 4.516 8 H 0.075 0.925 9 C 0.089 3.911 10 C 0.306 3.694 11 N -0.534 5.534 12 C 0.015 3.985 13 H 0.093 0.907 14 C -0.067 4.067 15 C -0.123 4.123 16 C -0.116 4.116 17 C -0.123 4.123 18 C -0.109 4.109 19 C 0.016 3.984 20 O -0.372 6.372 21 H 0.265 0.735 22 H 0.032 0.968 23 H 0.030 0.970 24 H 0.107 0.893 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.132 0.868 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.846 -10.903 3.869 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.554 4.554 8 H 0.093 0.907 9 C 0.051 3.949 10 C 0.080 3.920 11 N -0.270 5.270 12 C -0.095 4.095 13 H 0.111 0.889 14 C -0.085 4.085 15 C -0.160 4.160 16 C -0.153 4.153 17 C -0.161 4.161 18 C -0.146 4.146 19 C -0.060 4.060 20 O -0.277 6.277 21 H 0.074 0.926 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.125 0.875 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.150 0.850 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.191 -10.315 3.807 16.417 hybrid contribution -0.525 0.308 -0.184 0.636 sum 11.666 -10.007 3.623 15.791 Atomic orbital electron populations 1.70070 1.07449 1.27941 1.51836 1.25838 0.95720 1.02877 0.94896 0.85412 0.78509 0.78529 0.78373 1.19934 1.20526 1.19364 1.21362 0.94262 0.89765 1.50002 0.90702 1.17829 0.91702 0.87553 0.97784 1.26207 0.93252 0.84365 0.88138 1.74879 1.04933 1.23200 1.23966 1.23902 0.96813 0.88068 1.00695 0.88877 1.21692 0.93645 1.00496 0.92669 1.22448 0.98131 0.99775 0.95681 1.22435 0.97700 0.98247 0.96915 1.22284 1.00508 0.97883 0.95388 1.22025 0.98138 0.96365 0.98091 1.24854 0.82914 0.95967 1.02227 1.86906 1.40467 1.17504 1.82808 0.92596 0.95051 0.95225 0.87533 0.94716 0.90242 0.89310 0.92614 0.90588 0.94614 0.90054 0.93482 0.85010 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.52 -29.78 8.95 25.60 0.23 -29.55 16 8 H 0.07 4.36 6.76 -2.91 -0.02 4.34 16 9 C 0.09 4.83 5.60 29.10 0.16 4.99 16 10 C 0.31 14.24 7.61 88.58 0.67 14.91 16 11 N -0.53 -23.16 8.36 -429.27 -3.59 -26.75 16 12 C 0.01 0.47 3.35 45.41 0.15 0.62 16 13 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 14 C -0.07 -1.71 2.96 -10.07 -0.03 -1.74 16 15 C -0.12 -3.38 4.91 31.69 0.16 -3.22 16 16 C -0.12 -2.88 6.91 31.91 0.22 -2.66 16 17 C -0.12 -3.44 6.83 31.67 0.22 -3.23 16 18 C -0.11 -2.91 6.24 31.32 0.20 -2.72 16 19 C 0.02 0.48 7.50 72.61 0.54 1.02 16 20 O -0.37 -15.14 11.16 -78.61 -0.88 -16.02 16 21 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 22 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.03 1.25 6.95 -2.39 -0.02 1.24 16 26 H 0.08 1.77 7.97 -2.39 -0.02 1.75 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.53 7.44 -2.39 -0.02 1.51 16 33 H 0.13 2.86 8.14 -2.38 -0.02 2.84 16 34 H 0.09 2.37 6.65 -2.39 -0.02 2.36 16 Total: -1.00 -65.00 275.49 1.89 -63.11 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.07 Total: 8.74 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 2.98 Total: -20.85 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -3.30 Total: -82.40 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.88 Total: -16.02 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -65.00 1.89 -63.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260551884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.093 kcal (2) G-P(sol) polarization free energy of solvation -65.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds