Wall clock time and date at job start Mon Mar 30 2020 02:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00049 * 2 1 4 4 H 1.48501 * 109.47376 * 269.99995 * 3 2 1 5 5 H 1.48501 * 109.47500 * 29.99922 * 3 2 1 6 6 H 1.48504 * 109.47155 * 149.99665 * 3 2 1 7 7 C 1.37879 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00046 * 174.94957 * 7 2 1 9 9 C 1.50700 * 120.00080 * 354.94666 * 7 2 1 10 10 H 1.09001 * 109.47052 * 4.90324 * 9 7 2 11 11 C 1.53005 * 109.47369 * 244.90507 * 9 7 2 12 12 C 1.53778 * 113.61399 * 162.65431 * 11 9 7 13 13 C 1.53782 * 87.08060 * 220.01998 * 12 11 9 14 14 C 1.53780 * 87.08375 * 25.43159 * 13 12 11 15 15 C 1.53002 * 109.47377 * 124.90541 * 9 7 2 16 16 H 1.08992 * 110.22064 * 172.60386 * 15 9 7 17 17 C 1.54483 * 110.24336 * 294.53637 * 15 9 7 18 18 C 1.54632 * 101.76635 * 93.58087 * 17 15 9 19 19 C 1.51283 * 104.19189 * 24.79784 * 18 17 15 20 20 O 1.21276 * 124.93538 * 163.78801 * 19 18 17 21 21 N 1.34417 * 110.11740 * 343.74442 * 19 18 17 22 22 H 0.97000 * 119.99827 * 0.02562 * 1 2 3 23 23 H 1.08999 * 112.84549 * 293.96410 * 11 9 7 24 24 H 1.08998 * 113.61850 * 334.56371 * 12 11 9 25 25 H 1.09000 * 113.61719 * 105.47354 * 12 11 9 26 26 H 1.09010 * 113.61290 * 270.88749 * 13 12 11 27 27 H 1.08994 * 113.69407 * 139.99456 * 13 12 11 28 28 H 1.08991 * 113.61949 * 220.02141 * 14 13 12 29 29 H 1.09004 * 113.61145 * 89.11448 * 14 13 12 30 30 H 1.09001 * 110.96690 * 211.70154 * 17 15 9 31 31 H 1.09005 * 110.97080 * 335.42305 * 17 15 9 32 32 H 1.08993 * 110.48203 * 143.47708 * 18 17 15 33 33 H 1.09001 * 110.48416 * 265.98455 * 18 17 15 34 34 H 0.96997 * 124.34463 * 179.59639 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0814 -1.1960 -0.0818 9 6 1.2554 -2.4966 0.1161 10 1 0.1831 -2.3015 0.1013 11 6 1.6303 -3.1859 1.4296 12 6 0.6404 -4.2836 1.8537 13 6 0.8097 -3.7703 3.2934 14 6 1.1852 -2.4106 2.6810 15 6 1.6251 -3.4036 -1.0594 16 1 1.1938 -4.3949 -0.9205 17 6 1.1308 -2.7867 -2.3866 18 6 2.3797 -2.0043 -2.8551 19 6 3.5354 -2.7164 -2.1873 20 8 4.7000 -2.5997 -2.5052 21 7 3.0839 -3.4963 -1.1900 22 1 -0.4850 0.8401 -0.0004 23 1 2.6733 -3.5012 1.4594 24 1 -0.3645 -4.1430 1.4555 25 1 1.0188 -5.2946 1.7033 26 1 1.6280 -4.2469 3.8335 27 1 -0.1190 -3.7509 3.8635 28 1 2.0034 -1.9097 3.1983 29 1 0.3293 -1.7580 2.5088 30 1 0.8659 -3.5641 -3.1033 31 1 0.2902 -2.1143 -2.2151 32 1 2.4762 -2.0540 -3.9396 33 1 2.3260 -0.9669 -2.5249 34 1 3.6497 -4.0493 -0.6288 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260554485.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:50 Heat of formation + Delta-G solvation = -31.829235 kcal Electronic energy + Delta-G solvation = -16209.818443 eV Core-core repulsion = 13721.491974 eV Total energy + Delta-G solvation = -2488.326469 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.66322 -37.87806 -35.65968 -32.72393 -30.35899 -29.58699 -25.98469 -24.73091 -24.23623 -21.65055 -19.95369 -19.52191 -18.32620 -16.91010 -15.99624 -15.24467 -14.70564 -14.47046 -14.05069 -13.64743 -12.93018 -12.63760 -12.30480 -12.12340 -11.66008 -11.60713 -11.40635 -11.04848 -10.96007 -10.64472 -10.54577 -10.30750 -9.90269 -9.69637 -9.33878 -9.16295 -8.99299 -8.81039 -8.56116 -7.94541 -6.09197 -4.06948 3.26890 3.35498 3.42191 3.52742 4.32572 4.41291 5.18858 5.33547 5.43497 5.47975 5.54303 5.58567 5.72692 5.91243 6.07636 6.21817 6.35977 6.39864 6.43692 6.45805 6.60498 6.72311 6.81608 6.90966 7.01791 7.10120 7.23987 7.43830 7.60936 7.78908 7.87512 7.96015 8.38424 9.01836 9.15834 9.54811 10.99502 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.015698 C = 0.010263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.475572 B = 1783.289712 C = 2727.685791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.495 4.495 8 H 0.051 0.949 9 C 0.029 3.971 10 H 0.082 0.918 11 C -0.090 4.090 12 C -0.143 4.143 13 C -0.151 4.151 14 C -0.113 4.113 15 C 0.137 3.863 16 H 0.057 0.943 17 C -0.113 4.113 18 C -0.141 4.141 19 C 0.532 3.468 20 O -0.574 6.574 21 N -0.711 5.711 22 H 0.261 0.739 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 -6.317 0.561 6.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.533 4.533 8 H 0.069 0.931 9 C 0.010 3.990 10 H 0.100 0.900 11 C -0.109 4.109 12 C -0.181 4.181 13 C -0.189 4.189 14 C -0.150 4.150 15 C 0.032 3.968 16 H 0.075 0.925 17 C -0.151 4.151 18 C -0.181 4.181 19 C 0.319 3.681 20 O -0.455 6.455 21 N -0.363 5.363 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.132 0.868 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -1.368 -6.053 0.328 6.214 hybrid contribution 0.721 0.792 0.486 1.176 sum -0.647 -5.261 0.814 5.363 Atomic orbital electron populations 1.69855 1.05651 1.26558 1.50962 1.24841 0.94695 0.98674 0.94752 0.86845 0.80223 0.84196 0.78356 1.20584 1.21278 1.19981 1.20871 0.93078 0.89957 1.49417 0.93075 1.19423 1.00097 0.92307 0.87181 0.89986 1.22574 0.96456 0.94306 0.97544 1.23021 1.00691 0.97970 0.96399 1.22883 1.00116 0.99433 0.96422 1.22651 1.01080 0.94783 0.96497 1.21982 0.78549 0.98327 0.97929 0.92527 1.22405 0.98480 0.98893 0.95333 1.22194 0.93794 1.02710 0.99391 1.20817 0.89147 0.78051 0.80035 1.90630 1.19867 1.66364 1.68680 1.46136 1.09832 1.45925 1.34385 0.92935 0.91966 0.90608 0.93368 0.91666 0.92855 0.93262 0.89654 0.92761 0.88533 0.90739 0.86817 0.76785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.91 12.62 55.43 0.70 -22.21 16 2 C 0.07 1.81 5.45 -17.82 -0.10 1.71 16 3 Si 0.88 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.50 -11.89 5.05 -34.44 -0.17 -12.07 16 8 H 0.05 1.33 6.91 -52.49 -0.36 0.97 16 9 C 0.03 0.61 1.54 -91.77 -0.14 0.47 16 10 H 0.08 1.91 6.78 -51.93 -0.35 1.56 16 11 C -0.09 -1.70 2.99 -89.80 -0.27 -1.97 16 12 C -0.14 -2.33 7.40 -25.92 -0.19 -2.52 16 13 C -0.15 -2.41 8.08 -25.92 -0.21 -2.62 16 14 C -0.11 -2.16 7.26 -25.92 -0.19 -2.35 16 15 C 0.14 2.50 3.38 -67.01 -0.23 2.28 16 16 H 0.06 0.93 7.94 -51.93 -0.41 0.52 16 17 C -0.11 -2.01 6.49 -25.09 -0.16 -2.17 16 18 C -0.14 -2.71 6.12 -26.74 -0.16 -2.88 16 19 C 0.53 11.26 7.31 -10.86 -0.08 11.18 16 20 O -0.57 -13.98 18.03 5.56 0.10 -13.88 16 21 N -0.71 -13.36 5.09 -52.77 -0.27 -13.63 16 22 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 23 H 0.06 1.19 7.88 -51.93 -0.41 0.78 16 24 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.83 8.10 -51.93 -0.42 1.41 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.87 7.85 -51.93 -0.41 1.46 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.11 2.44 7.18 -51.93 -0.37 2.07 16 34 H 0.40 6.82 8.85 -40.82 -0.36 6.46 16 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -27.05 274.35 -7.45 -34.49 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.19 Total: 6.49 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -1.90 Total: -10.94 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.43 Total: -35.84 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.10 Total: -13.88 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.05 -7.45 -34.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554485.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.665 kcal (2) G-P(sol) polarization free energy of solvation -27.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds