Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00226 * 2 1 4 4 H 1.48497 * 109.46940 * 95.17620 * 3 2 1 5 5 H 1.48501 * 109.46965 * 335.17450 * 3 2 1 6 6 H 1.48503 * 109.46877 * 215.17385 * 3 2 1 7 7 C 1.37880 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00202 * 6.99972 * 7 2 1 9 9 C 1.50695 * 119.99862 * 186.99736 * 7 2 1 10 10 H 1.09000 * 109.47466 * 1.52998 * 9 7 2 11 11 C 1.52998 * 109.47122 * 121.53373 * 9 7 2 12 12 C 1.53785 * 113.61289 * 282.55907 * 11 9 7 13 13 C 1.53775 * 87.08614 * 220.02108 * 12 11 9 14 14 C 1.53783 * 87.08196 * 25.42921 * 13 12 11 15 15 C 1.53003 * 109.47368 * 241.52833 * 9 7 2 16 16 H 1.08997 * 110.22187 * 186.93141 * 15 9 7 17 17 C 1.54484 * 110.24325 * 64.99786 * 15 9 7 18 18 C 1.54628 * 101.76381 * 215.58257 * 17 15 9 19 19 C 1.51282 * 104.19388 * 24.80406 * 18 17 15 20 20 O 1.21284 * 124.93770 * 163.77735 * 19 18 17 21 21 N 1.34413 * 110.11568 * 343.73986 * 19 18 17 22 22 H 0.96999 * 120.00182 * 0.02562 * 1 2 3 23 23 H 1.08998 * 112.85369 * 53.86608 * 11 9 7 24 24 H 1.09004 * 113.61244 * 334.56942 * 12 11 9 25 25 H 1.08998 * 113.61467 * 105.46696 * 12 11 9 26 26 H 1.09007 * 113.61327 * 270.88399 * 13 12 11 27 27 H 1.08994 * 113.69795 * 139.99204 * 13 12 11 28 28 H 1.08990 * 113.61704 * 220.02007 * 14 13 12 29 29 H 1.09002 * 113.68655 * 89.12428 * 14 13 12 30 30 H 1.08992 * 110.96974 * 333.70996 * 17 15 9 31 31 H 1.09004 * 110.96343 * 97.46703 * 17 15 9 32 32 H 1.09003 * 110.48131 * 143.47932 * 18 17 15 33 33 H 1.08991 * 110.48808 * 266.12283 * 18 17 15 34 34 H 0.97002 * 124.34370 * 179.57160 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6060 1.9832 1.3943 5 1 1.3962 2.6817 -0.5878 6 1 3.4878 1.4741 -0.8066 7 6 2.0044 -1.1941 0.0005 8 1 1.4704 -2.1260 -0.1130 9 6 3.5030 -1.1990 0.1595 10 1 3.8582 -0.1764 0.2872 11 6 3.8828 -2.0280 1.3881 12 6 3.6598 -1.2928 2.7203 13 6 4.9840 -1.9141 3.1946 14 6 5.3857 -1.9958 1.7124 15 6 4.1462 -1.8103 -1.0869 16 1 5.2187 -1.9327 -0.9358 17 6 3.8782 -0.9179 -2.3191 18 6 3.7129 -1.9699 -3.4402 19 6 3.2752 -3.2219 -2.7125 20 8 2.7731 -4.1920 -3.2396 21 7 3.5244 -3.1031 -1.3971 22 1 -0.4850 0.8400 -0.0004 23 1 3.4622 -3.0333 1.3669 24 1 3.6943 -0.2069 2.6308 25 1 2.7892 -1.6454 3.2732 26 1 4.8641 -2.8883 3.6688 27 1 5.6034 -1.2329 3.7779 28 1 5.9084 -2.9160 1.4517 29 1 5.8923 -1.1028 1.3461 30 1 2.9641 -0.3386 -2.1897 31 1 4.7273 -0.2645 -2.5194 32 1 2.9481 -1.6541 -4.1499 33 1 4.6618 -2.1368 -3.9497 34 1 3.3193 -3.7841 -0.7375 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260554486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = -30.671123 kcal Electronic energy + Delta-G solvation = -16072.595445 eV Core-core repulsion = 13584.319195 eV Total energy + Delta-G solvation = -2488.276249 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.78729 -38.17080 -35.81706 -32.79118 -30.65162 -30.31824 -25.91407 -24.97741 -24.39510 -21.69001 -20.00986 -19.80848 -18.55231 -17.09044 -16.30860 -15.65041 -14.91792 -14.47015 -14.24058 -13.68109 -13.04021 -12.86462 -12.66053 -12.47571 -11.97810 -11.90522 -11.73398 -11.51808 -11.13467 -10.95883 -10.48530 -10.16219 -10.11027 -9.75260 -9.49551 -9.40284 -9.17083 -9.02176 -8.62868 -8.14299 -6.13418 -4.11754 3.19090 3.26026 3.30491 3.31096 4.21727 4.32534 5.02384 5.04297 5.21159 5.27582 5.31879 5.34520 5.50240 5.67729 5.79858 6.01721 6.05738 6.14960 6.17626 6.25569 6.29272 6.40858 6.42112 6.66878 6.68211 6.81346 6.93399 7.04634 7.23469 7.56376 7.69373 7.82027 8.45756 8.94728 8.99908 9.48223 11.00007 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.014493 C = 0.010133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.558076 B = 1931.542098 C = 2762.508272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.865 3.135 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.497 4.497 8 H 0.075 0.925 9 C 0.012 3.988 10 H 0.048 0.952 11 C -0.089 4.089 12 C -0.123 4.123 13 C -0.147 4.147 14 C -0.147 4.147 15 C 0.138 3.862 16 H 0.056 0.944 17 C -0.127 4.127 18 C -0.153 4.153 19 C 0.522 3.478 20 O -0.565 6.565 21 N -0.697 5.697 22 H 0.263 0.737 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.039 0.181 1.050 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.693 3.307 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.534 4.534 8 H 0.093 0.907 9 C -0.007 4.007 10 H 0.066 0.934 11 C -0.108 4.108 12 C -0.160 4.160 13 C -0.184 4.184 14 C -0.185 4.185 15 C 0.033 3.967 16 H 0.074 0.926 17 C -0.165 4.165 18 C -0.193 4.193 19 C 0.308 3.692 20 O -0.445 6.445 21 N -0.349 5.349 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 10.636 -0.092 0.701 10.659 hybrid contribution 0.206 0.800 0.423 0.928 sum 10.842 0.708 1.123 10.923 Atomic orbital electron populations 1.69901 1.06305 1.26875 1.50258 1.25086 0.94588 0.98549 0.94603 0.87107 0.80353 0.84401 0.78872 1.20283 1.21740 1.18599 1.20776 0.88722 0.94642 1.49293 0.90738 1.19543 0.97340 0.94800 0.89045 0.93435 1.22564 0.92567 0.99556 0.96066 1.22740 0.96098 0.99767 0.97434 1.22852 0.98674 1.00475 0.96448 1.23054 0.98318 1.00880 0.96216 1.21898 0.94676 0.82647 0.97511 0.92570 1.22714 1.03746 0.97128 0.92936 1.22263 1.02864 0.95009 0.99187 1.20755 0.76909 0.88075 0.83458 1.90665 1.46069 1.35942 1.71847 1.46056 1.61444 1.19269 1.08119 0.92652 0.90544 0.90927 0.92013 0.91020 0.92607 0.92648 0.90813 0.88434 0.91091 0.88882 0.89180 0.75870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 13.96 55.43 0.77 -25.29 16 2 C 0.07 1.95 5.27 -17.82 -0.09 1.85 16 3 Si 0.86 19.64 25.77 -169.99 -4.38 15.26 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -5.40 6.53 56.52 0.37 -5.03 16 7 C -0.50 -12.33 7.25 -34.44 -0.25 -12.58 16 8 H 0.07 2.11 7.89 -52.48 -0.41 1.70 16 9 C 0.01 0.24 1.28 -91.77 -0.12 0.13 16 10 H 0.05 0.97 4.71 -51.93 -0.24 0.73 16 11 C -0.09 -1.57 2.89 -89.80 -0.26 -1.83 16 12 C -0.12 -2.15 7.56 -25.92 -0.20 -2.34 16 13 C -0.15 -2.09 8.08 -25.92 -0.21 -2.30 16 14 C -0.15 -2.15 6.82 -25.91 -0.18 -2.33 16 15 C 0.14 2.44 3.12 -67.01 -0.21 2.23 16 16 H 0.06 0.87 7.45 -51.93 -0.39 0.48 16 17 C -0.13 -2.20 6.35 -25.10 -0.16 -2.36 16 18 C -0.15 -2.52 6.86 -26.74 -0.18 -2.70 16 19 C 0.52 10.44 8.43 -10.86 -0.09 10.35 16 20 O -0.56 -13.23 18.03 5.55 0.10 -13.13 16 21 N -0.70 -12.99 5.01 -52.76 -0.26 -13.25 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.08 1.38 7.59 -51.93 -0.39 0.98 16 24 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 30 H 0.10 1.97 5.57 -51.93 -0.29 1.68 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.40 7.30 8.30 -40.82 -0.34 6.96 16 LS Contribution 270.39 15.07 4.07 4.07 Total: -1.00 -29.49 270.39 -6.68 -36.17 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.03 Total: 8.06 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.95 Total: -11.89 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.51 Total: -38.55 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.10 Total: -13.13 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.38 Total: 15.26 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.49 -6.68 -36.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.499 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds