Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00226 * 2 1 4 4 H 1.48497 * 109.46940 * 95.17620 * 3 2 1 5 5 H 1.48501 * 109.46965 * 335.17450 * 3 2 1 6 6 H 1.48503 * 109.46877 * 215.17385 * 3 2 1 7 7 C 1.37880 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00202 * 6.99972 * 7 2 1 9 9 C 1.50695 * 119.99862 * 186.99736 * 7 2 1 10 10 H 1.09000 * 109.47466 * 1.52998 * 9 7 2 11 11 C 1.52998 * 109.47122 * 121.53373 * 9 7 2 12 12 C 1.53785 * 113.61289 * 282.55907 * 11 9 7 13 13 C 1.53775 * 87.08614 * 220.02108 * 12 11 9 14 14 C 1.53783 * 87.08196 * 25.42921 * 13 12 11 15 15 C 1.53003 * 109.47368 * 241.52833 * 9 7 2 16 16 H 1.08997 * 110.22187 * 186.93141 * 15 9 7 17 17 C 1.54484 * 110.24325 * 64.99786 * 15 9 7 18 18 C 1.54628 * 101.76381 * 215.58257 * 17 15 9 19 19 C 1.51282 * 104.19388 * 24.80406 * 18 17 15 20 20 O 1.21284 * 124.93770 * 163.77735 * 19 18 17 21 21 N 1.34413 * 110.11568 * 343.73986 * 19 18 17 22 22 H 0.96999 * 120.00182 * 0.02562 * 1 2 3 23 23 H 1.08998 * 112.85369 * 53.86608 * 11 9 7 24 24 H 1.09004 * 113.61244 * 334.56942 * 12 11 9 25 25 H 1.08998 * 113.61467 * 105.46696 * 12 11 9 26 26 H 1.09007 * 113.61327 * 270.88399 * 13 12 11 27 27 H 1.08994 * 113.69795 * 139.99204 * 13 12 11 28 28 H 1.08990 * 113.61704 * 220.02007 * 14 13 12 29 29 H 1.09002 * 113.68655 * 89.12428 * 14 13 12 30 30 H 1.08992 * 110.96974 * 333.70996 * 17 15 9 31 31 H 1.09004 * 110.96343 * 97.46703 * 17 15 9 32 32 H 1.09003 * 110.48131 * 143.47932 * 18 17 15 33 33 H 1.08991 * 110.48808 * 266.12283 * 18 17 15 34 34 H 0.97002 * 124.34370 * 179.57160 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6060 1.9832 1.3943 5 1 1.3962 2.6817 -0.5878 6 1 3.4878 1.4741 -0.8066 7 6 2.0044 -1.1941 0.0005 8 1 1.4704 -2.1260 -0.1130 9 6 3.5030 -1.1990 0.1595 10 1 3.8582 -0.1764 0.2872 11 6 3.8828 -2.0280 1.3881 12 6 3.6598 -1.2928 2.7203 13 6 4.9840 -1.9141 3.1946 14 6 5.3857 -1.9958 1.7124 15 6 4.1462 -1.8103 -1.0869 16 1 5.2187 -1.9327 -0.9358 17 6 3.8782 -0.9179 -2.3191 18 6 3.7129 -1.9699 -3.4402 19 6 3.2752 -3.2219 -2.7125 20 8 2.7731 -4.1920 -3.2396 21 7 3.5244 -3.1031 -1.3971 22 1 -0.4850 0.8400 -0.0004 23 1 3.4622 -3.0333 1.3669 24 1 3.6943 -0.2069 2.6308 25 1 2.7892 -1.6454 3.2732 26 1 4.8641 -2.8883 3.6688 27 1 5.6034 -1.2329 3.7779 28 1 5.9084 -2.9160 1.4517 29 1 5.8923 -1.1028 1.3461 30 1 2.9641 -0.3386 -2.1897 31 1 4.7273 -0.2645 -2.5194 32 1 2.9481 -1.6541 -4.1499 33 1 4.6618 -2.1368 -3.9497 34 1 3.3193 -3.7841 -0.7375 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260554486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = -50.757770 kcal Electronic energy + Delta-G solvation = -16073.466467 eV Core-core repulsion = 13584.319195 eV Total energy + Delta-G solvation = -2489.147272 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.28148 -39.56733 -37.37193 -34.71399 -32.11269 -31.95389 -27.48491 -26.32901 -25.93581 -23.09862 -21.53158 -21.29787 -19.93667 -18.93275 -17.90474 -17.14957 -16.43469 -16.04963 -15.60854 -15.32694 -14.68155 -14.56246 -14.12052 -14.06219 -13.35843 -13.22775 -13.12736 -13.00446 -12.68860 -12.43486 -11.91096 -11.78435 -11.57929 -11.36402 -11.07131 -10.85637 -10.75450 -10.70233 -10.44855 -9.69006 -8.18350 -6.19086 1.39648 1.40987 1.50437 1.75484 2.41671 2.75303 3.16271 3.61508 3.89673 3.97041 4.02045 4.05964 4.20225 4.34325 4.45408 4.70547 4.77614 4.84604 4.90634 5.00679 5.03715 5.13220 5.19225 5.24829 5.27845 5.36780 5.58740 5.59569 5.78803 5.84478 6.08334 6.28272 6.45943 6.88670 7.44535 7.44632 8.99487 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.014493 C = 0.010133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.558076 B = 1931.542098 C = 2762.508272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C 0.011 3.989 3 Si 0.923 3.077 4 H -0.273 1.273 5 H -0.304 1.304 6 H -0.218 1.218 7 C -0.477 4.477 8 H 0.023 0.977 9 C 0.013 3.987 10 H 0.054 0.946 11 C -0.100 4.100 12 C -0.138 4.138 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.138 3.862 16 H 0.098 0.902 17 C -0.130 4.130 18 C -0.143 4.143 19 C 0.506 3.494 20 O -0.610 6.610 21 N -0.697 5.697 22 H 0.259 0.741 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.057 1.132 0.997 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.185 4.185 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.232 1.232 6 H -0.140 1.140 7 C -0.516 4.516 8 H 0.041 0.959 9 C -0.007 4.007 10 H 0.072 0.928 11 C -0.118 4.118 12 C -0.176 4.176 13 C -0.169 4.169 14 C -0.167 4.167 15 C 0.034 3.966 16 H 0.116 0.884 17 C -0.168 4.168 18 C -0.182 4.182 19 C 0.294 3.706 20 O -0.494 6.494 21 N -0.347 5.347 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.149 0.851 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 14.710 0.860 0.665 14.750 hybrid contribution -1.122 0.398 0.494 1.288 sum 13.589 1.258 1.159 13.696 Atomic orbital electron populations 1.70096 1.08697 1.27479 1.53778 1.25929 0.95089 1.02647 0.94814 0.86150 0.80403 0.79120 0.79531 1.19845 1.23192 1.14017 1.20944 0.91561 0.92221 1.46831 0.95894 1.19531 0.93718 0.95967 0.91442 0.92837 1.22532 0.95932 0.98489 0.94890 1.22820 0.97625 0.99313 0.97836 1.22785 0.96211 1.01016 0.96879 1.22977 0.95355 1.02560 0.95841 1.22022 0.96382 0.81881 0.96365 0.88399 1.22779 1.03875 0.97376 0.92735 1.22288 1.04724 0.92421 0.98801 1.21500 0.76315 0.88746 0.84057 1.90633 1.48107 1.37914 1.72722 1.46214 1.60862 1.19698 1.07928 0.93221 0.91754 0.91865 0.94073 0.90024 0.90624 0.90662 0.89335 0.91834 0.86823 0.88950 0.85139 0.76160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.71 13.96 21.45 0.30 -58.41 16 2 C 0.01 0.59 5.27 84.66 0.45 1.03 16 3 Si 0.92 40.03 25.77 68.60 1.77 41.80 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.22 -7.84 6.53 99.48 0.65 -7.19 16 7 C -0.48 -24.25 7.25 25.60 0.19 -24.07 16 8 H 0.02 1.37 7.89 -2.91 -0.02 1.35 16 9 C 0.01 0.48 1.28 -11.54 -0.01 0.47 16 10 H 0.05 1.99 4.71 -2.39 -0.01 1.98 16 11 C -0.10 -3.33 2.89 -10.26 -0.03 -3.36 16 12 C -0.14 -4.65 7.56 31.12 0.24 -4.41 16 13 C -0.13 -3.27 8.08 31.12 0.25 -3.02 16 14 C -0.13 -3.19 6.82 31.12 0.21 -2.98 16 15 C 0.14 4.41 3.12 45.45 0.14 4.55 16 16 H 0.10 2.44 7.45 -2.39 -0.02 2.43 16 17 C -0.13 -3.98 6.35 31.65 0.20 -3.78 16 18 C -0.14 -4.28 6.86 30.59 0.21 -4.07 16 19 C 0.51 19.84 8.43 87.90 0.74 20.58 16 20 O -0.61 -28.89 18.03 -3.04 -0.05 -28.94 16 21 N -0.70 -25.24 5.01 -439.43 -2.20 -27.44 16 22 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 23 H 0.06 2.29 7.59 -2.39 -0.02 2.27 16 24 H 0.06 2.23 8.04 -2.38 -0.02 2.21 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.09 1.97 8.10 -2.39 -0.02 1.95 16 30 H 0.06 2.42 5.57 -2.39 -0.01 2.40 16 31 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.40 14.56 8.30 -92.71 -0.77 13.79 16 Total: -1.00 -68.44 270.39 2.65 -65.79 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.26 Total: 26.26 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 2.58 Total: -19.05 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -1.90 Total: -85.85 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.05 Total: -28.94 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.77 Total: 41.80 kcal Total: -68.44 2.65 -65.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.028 kcal (2) G-P(sol) polarization free energy of solvation -68.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds