Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99690 * 2 1 4 4 H 1.48505 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47438 * 300.00397 * 3 2 1 6 6 H 1.48494 * 109.47197 * 60.00357 * 3 2 1 7 7 C 1.37879 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99908 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46866 * 300.00133 * 9 7 2 12 12 C 1.53772 * 113.61475 * 277.49642 * 11 9 7 13 13 C 1.53781 * 87.08354 * 220.02318 * 12 11 9 14 14 C 1.53781 * 113.61135 * 179.97438 * 11 9 7 15 15 C 1.52997 * 109.47265 * 60.00115 * 9 7 2 16 16 H 1.09008 * 110.21771 * 299.29934 * 15 9 7 17 17 C 1.54481 * 110.24356 * 61.22654 * 15 9 7 18 18 C 1.54627 * 101.76012 * 93.58756 * 17 15 9 19 19 C 1.51280 * 104.19905 * 24.80011 * 18 17 15 20 20 O 1.21281 * 124.94185 * 163.75265 * 19 18 17 21 21 N 1.34622 * 110.14922 * 343.76405 * 19 18 17 22 22 H 0.96999 * 120.00396 * 359.97438 * 1 2 3 23 23 H 1.09000 * 112.84759 * 48.80639 * 11 9 7 24 24 H 1.09000 * 113.61922 * 334.57064 * 12 11 9 25 25 H 1.08999 * 113.61689 * 105.47008 * 12 11 9 26 26 H 1.09005 * 113.61134 * 270.88438 * 13 12 11 27 27 H 1.08994 * 113.69575 * 139.99585 * 13 12 11 28 28 H 1.09000 * 113.61578 * 254.52872 * 14 11 9 29 29 H 1.09003 * 113.61302 * 25.43614 * 14 11 9 30 30 H 1.09003 * 110.96662 * 211.70220 * 17 15 9 31 31 H 1.08994 * 110.97166 * 335.42954 * 17 15 9 32 32 H 1.09010 * 110.48434 * 143.47483 * 18 17 15 33 33 H 1.09001 * 110.48600 * 265.98461 * 18 17 15 34 34 H 0.96998 * 124.46994 * 179.54230 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 1.9595 -3.3276 -0.0005 11 6 0.3720 -2.5805 1.2491 12 6 1.1261 -3.0528 2.5032 13 6 -0.1257 -3.8759 2.8500 14 6 -0.4434 -3.8808 1.3450 15 6 0.3711 -2.5800 -1.2494 16 1 -0.3509 -1.7633 -1.2551 17 6 1.2443 -2.5304 -2.5228 18 6 1.4570 -4.0332 -2.8179 19 6 0.2702 -4.7105 -2.1686 20 8 -0.0940 -5.8442 -2.3985 21 7 -0.3234 -3.8720 -1.2986 22 1 -0.4851 0.8400 0.0004 23 1 -0.2218 -1.6803 1.4081 24 1 2.0022 -3.6625 2.2822 25 1 1.3341 -2.2535 3.2145 26 1 -0.8553 -3.3300 3.4482 27 1 0.0974 -4.8639 3.2526 28 1 -1.5022 -3.7497 1.1216 29 1 0.0034 -4.7170 0.8072 30 1 0.7135 -2.0435 -3.3410 31 1 2.1937 -2.0327 -2.3256 32 1 1.4586 -4.2145 -3.8928 33 1 2.3886 -4.3814 -2.3718 34 1 -1.1081 -4.0920 -0.7726 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260554488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = -25.332630 kcal Electronic energy + Delta-G solvation = -16247.780502 eV Core-core repulsion = 13759.735747 eV Total energy + Delta-G solvation = -2488.044755 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.78501 -37.79502 -35.63040 -33.12648 -30.52096 -29.41675 -25.59208 -24.75010 -24.41272 -21.78161 -19.94561 -19.47675 -18.39506 -16.64768 -16.24581 -15.21007 -14.89589 -14.35253 -14.08267 -13.64829 -13.01287 -12.64507 -12.37032 -12.08590 -11.74129 -11.55957 -11.28413 -11.04202 -10.97911 -10.76752 -10.58511 -10.24571 -9.87268 -9.66988 -9.36494 -9.28540 -9.06286 -8.92133 -8.36826 -7.92663 -6.14247 -4.21053 3.19963 3.30511 3.31070 3.33580 4.26219 4.35769 5.11940 5.25515 5.44556 5.52468 5.58395 5.67217 5.71242 5.94212 6.09255 6.26179 6.30771 6.46776 6.53712 6.54140 6.68532 6.79679 6.88755 6.91166 7.09513 7.29712 7.37250 7.43126 7.68928 7.72284 7.89211 8.01620 8.32123 8.78110 9.04019 9.45105 10.87862 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.012603 C = 0.009166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.245850 B = 2221.238275 C = 3053.988115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.057 0.943 9 C 0.052 3.948 10 H 0.019 0.981 11 C -0.082 4.082 12 C -0.129 4.129 13 C -0.146 4.146 14 C -0.151 4.151 15 C 0.128 3.872 16 H 0.117 0.883 17 C -0.116 4.116 18 C -0.156 4.156 19 C 0.510 3.490 20 O -0.573 6.573 21 N -0.719 5.719 22 H 0.262 0.738 23 H 0.114 0.886 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.591 -2.043 -0.055 2.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.032 3.968 10 H 0.037 0.963 11 C -0.101 4.101 12 C -0.167 4.167 13 C -0.184 4.184 14 C -0.189 4.189 15 C 0.025 3.975 16 H 0.135 0.865 17 C -0.154 4.154 18 C -0.196 4.196 19 C 0.296 3.704 20 O -0.455 6.455 21 N -0.372 5.372 22 H 0.072 0.928 23 H 0.132 0.868 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.351 -2.430 -0.236 2.467 hybrid contribution 0.104 0.926 0.364 1.001 sum 0.455 -1.504 0.128 1.577 Atomic orbital electron populations 1.69749 1.05765 1.26525 1.50596 1.24914 0.94821 0.98927 0.94605 0.86600 0.80288 0.83910 0.77639 1.19796 1.21010 1.21102 1.21076 0.92919 0.90138 1.50157 0.92456 1.19003 0.92390 0.95537 0.89844 0.96259 1.22587 0.96455 0.95985 0.95062 1.22791 0.95895 0.98470 0.99521 1.22831 0.99267 0.99165 0.97107 1.23212 0.99326 1.00934 0.95427 1.22215 0.95932 0.83485 0.95892 0.86547 1.22533 1.02418 0.93195 0.97279 1.22304 0.97957 0.97998 1.01354 1.21071 0.84707 0.84932 0.79659 1.90642 1.69548 1.18647 1.66644 1.47033 1.31049 1.17149 1.42007 0.92800 0.86772 0.91719 0.92844 0.91301 0.93201 0.93183 0.91058 0.92146 0.88411 0.89700 0.88759 0.75848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.62 9.45 55.43 0.52 -21.09 16 2 C 0.07 1.65 5.12 -17.82 -0.09 1.55 16 3 Si 0.89 19.24 29.54 -169.99 -5.02 14.22 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.50 -11.93 7.38 -34.44 -0.25 -12.19 16 8 H 0.06 1.38 7.81 -52.49 -0.41 0.97 16 9 C 0.05 1.12 1.72 -91.77 -0.16 0.97 16 10 H 0.02 0.42 7.94 -51.93 -0.41 0.01 16 11 C -0.08 -1.72 2.86 -89.81 -0.26 -1.97 16 12 C -0.13 -2.48 7.62 -25.92 -0.20 -2.67 16 13 C -0.15 -2.50 8.08 -25.90 -0.21 -2.71 16 14 C -0.15 -2.78 5.26 -25.90 -0.14 -2.92 16 15 C 0.13 2.60 2.77 -67.01 -0.19 2.42 16 16 H 0.12 2.65 6.15 -51.92 -0.32 2.33 16 17 C -0.12 -2.12 6.52 -25.10 -0.16 -2.28 16 18 C -0.16 -2.66 6.86 -26.74 -0.18 -2.84 16 19 C 0.51 10.15 8.44 -10.77 -0.09 10.06 16 20 O -0.57 -13.07 18.03 5.56 0.10 -12.97 16 21 N -0.72 -13.77 4.14 -52.71 -0.22 -13.99 16 22 H 0.26 6.24 8.31 -40.82 -0.34 5.90 16 23 H 0.11 2.70 6.17 -51.93 -0.32 2.38 16 24 H 0.06 1.23 7.96 -51.93 -0.41 0.81 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.88 7.53 -51.93 -0.39 0.49 16 29 H 0.07 1.35 7.02 -51.93 -0.36 0.99 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 1.84 6.90 -51.93 -0.36 1.48 16 32 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.40 7.40 6.46 -40.82 -0.26 7.14 16 LS Contribution 266.22 15.07 4.01 4.01 Total: -1.00 -25.46 266.22 -7.45 -32.92 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -4.92 Total: 9.49 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.93 Total: -12.59 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.31 Total: -35.08 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.10 Total: -12.97 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -25.46 -7.45 -32.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.584 kcal (2) G-P(sol) polarization free energy of solvation -25.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds