Wall clock time and date at job start Mon Mar 30 2020 02:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99690 * 2 1 4 4 H 1.48505 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47438 * 300.00397 * 3 2 1 6 6 H 1.48494 * 109.47197 * 60.00357 * 3 2 1 7 7 C 1.37879 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99908 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46866 * 300.00133 * 9 7 2 12 12 C 1.53772 * 113.61475 * 277.49642 * 11 9 7 13 13 C 1.53781 * 87.08354 * 220.02318 * 12 11 9 14 14 C 1.53781 * 113.61135 * 179.97438 * 11 9 7 15 15 C 1.52997 * 109.47265 * 60.00115 * 9 7 2 16 16 H 1.09008 * 110.21771 * 299.29934 * 15 9 7 17 17 C 1.54481 * 110.24356 * 61.22654 * 15 9 7 18 18 C 1.54627 * 101.76012 * 93.58756 * 17 15 9 19 19 C 1.51280 * 104.19905 * 24.80011 * 18 17 15 20 20 O 1.21281 * 124.94185 * 163.75265 * 19 18 17 21 21 N 1.34622 * 110.14922 * 343.76405 * 19 18 17 22 22 H 0.96999 * 120.00396 * 359.97438 * 1 2 3 23 23 H 1.09000 * 112.84759 * 48.80639 * 11 9 7 24 24 H 1.09000 * 113.61922 * 334.57064 * 12 11 9 25 25 H 1.08999 * 113.61689 * 105.47008 * 12 11 9 26 26 H 1.09005 * 113.61134 * 270.88438 * 13 12 11 27 27 H 1.08994 * 113.69575 * 139.99585 * 13 12 11 28 28 H 1.09000 * 113.61578 * 254.52872 * 14 11 9 29 29 H 1.09003 * 113.61302 * 25.43614 * 14 11 9 30 30 H 1.09003 * 110.96662 * 211.70220 * 17 15 9 31 31 H 1.08994 * 110.97166 * 335.42954 * 17 15 9 32 32 H 1.09010 * 110.48434 * 143.47483 * 18 17 15 33 33 H 1.09001 * 110.48600 * 265.98461 * 18 17 15 34 34 H 0.96998 * 124.46994 * 179.54230 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 1.9595 -3.3276 -0.0005 11 6 0.3720 -2.5805 1.2491 12 6 1.1261 -3.0528 2.5032 13 6 -0.1257 -3.8759 2.8500 14 6 -0.4434 -3.8808 1.3450 15 6 0.3711 -2.5800 -1.2494 16 1 -0.3509 -1.7633 -1.2551 17 6 1.2443 -2.5304 -2.5228 18 6 1.4570 -4.0332 -2.8179 19 6 0.2702 -4.7105 -2.1686 20 8 -0.0940 -5.8442 -2.3985 21 7 -0.3234 -3.8720 -1.2986 22 1 -0.4851 0.8400 0.0004 23 1 -0.2218 -1.6803 1.4081 24 1 2.0022 -3.6625 2.2822 25 1 1.3341 -2.2535 3.2145 26 1 -0.8553 -3.3300 3.4482 27 1 0.0974 -4.8639 3.2526 28 1 -1.5022 -3.7497 1.1216 29 1 0.0034 -4.7170 0.8072 30 1 0.7135 -2.0435 -3.3410 31 1 2.1937 -2.0327 -2.3256 32 1 1.4586 -4.2145 -3.8928 33 1 2.3886 -4.3814 -2.3718 34 1 -1.1081 -4.0920 -0.7726 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260554488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:54 Heat of formation + Delta-G solvation = -38.697083 kcal Electronic energy + Delta-G solvation = -16248.360028 eV Core-core repulsion = 13759.735747 eV Total energy + Delta-G solvation = -2488.624281 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.37428 -39.37568 -37.24655 -34.91240 -32.02792 -31.12380 -27.21918 -26.29602 -26.06896 -23.33596 -21.54775 -21.06345 -19.95192 -18.28696 -18.03607 -16.76387 -16.61800 -15.91200 -15.67623 -15.23948 -14.66660 -14.18195 -14.00982 -13.70961 -13.25765 -13.07685 -12.86549 -12.77150 -12.64414 -12.40170 -12.11293 -11.87443 -11.44892 -11.32710 -10.97583 -10.93347 -10.72875 -10.62132 -10.09175 -9.56304 -7.97866 -6.08438 1.45783 1.53445 1.59550 1.73465 2.50592 2.75121 3.28869 3.73636 3.97106 4.05445 4.11693 4.17334 4.29506 4.42300 4.59129 4.87666 4.91552 4.98939 5.00792 5.05081 5.11162 5.26610 5.32340 5.40252 5.50592 5.65874 5.74830 5.76824 5.89866 6.07582 6.19866 6.37416 6.53532 6.93317 7.45989 7.58615 9.02131 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.012603 C = 0.009166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.245850 B = 2221.238275 C = 3053.988115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.038 3.962 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.291 1.291 7 C -0.513 4.513 8 H 0.048 0.952 9 C 0.053 3.947 10 H 0.012 0.988 11 C -0.092 4.092 12 C -0.132 4.132 13 C -0.132 4.132 14 C -0.142 4.142 15 C 0.134 3.866 16 H 0.094 0.906 17 C -0.113 4.113 18 C -0.145 4.145 19 C 0.506 3.494 20 O -0.603 6.603 21 N -0.712 5.712 22 H 0.260 0.740 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 -2.401 -0.187 2.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.217 1.217 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.034 3.966 10 H 0.031 0.969 11 C -0.111 4.111 12 C -0.169 4.169 13 C -0.169 4.169 14 C -0.180 4.180 15 C 0.030 3.970 16 H 0.112 0.888 17 C -0.151 4.151 18 C -0.185 4.185 19 C 0.293 3.707 20 O -0.487 6.487 21 N -0.365 5.365 22 H 0.069 0.931 23 H 0.105 0.895 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.643 -2.780 -0.364 2.876 hybrid contribution 0.013 1.055 0.429 1.139 sum 0.656 -1.725 0.066 1.846 Atomic orbital electron populations 1.69856 1.06372 1.26683 1.50979 1.25333 0.95331 1.00781 0.94712 0.85877 0.79357 0.81427 0.77133 1.19792 1.20928 1.21745 1.21203 0.92602 0.91222 1.50108 0.93383 1.18959 0.92434 0.94302 0.90923 0.96944 1.22480 0.96985 0.96099 0.95522 1.22792 0.96778 0.98708 0.98633 1.22769 0.97982 0.99913 0.96272 1.23083 0.99213 0.99128 0.96546 1.21984 0.95485 0.83073 0.96450 0.88818 1.22487 1.01776 0.94255 0.96537 1.22300 0.97030 0.96354 1.02798 1.21496 0.85203 0.84514 0.79441 1.90629 1.70532 1.19909 1.67596 1.46977 1.30962 1.16705 1.41818 0.93055 0.89482 0.91664 0.93416 0.90369 0.91187 0.92533 0.91489 0.91054 0.88930 0.87167 0.87609 0.75629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -43.87 9.45 21.45 0.20 -43.67 16 2 C 0.04 1.83 5.12 84.66 0.43 2.26 16 3 Si 0.93 39.21 29.54 68.60 2.03 41.24 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.51 -24.13 7.38 25.60 0.19 -23.95 16 8 H 0.05 2.31 7.81 -2.91 -0.02 2.28 16 9 C 0.05 2.29 1.72 -11.54 -0.02 2.27 16 10 H 0.01 0.53 7.94 -2.39 -0.02 0.51 16 11 C -0.09 -3.80 2.86 -10.27 -0.03 -3.83 16 12 C -0.13 -4.91 7.62 31.12 0.24 -4.67 16 13 C -0.13 -4.23 8.08 31.13 0.25 -3.98 16 14 C -0.14 -5.03 5.26 31.13 0.16 -4.86 16 15 C 0.13 5.35 2.77 45.44 0.13 5.47 16 16 H 0.09 4.25 6.15 -2.38 -0.01 4.24 16 17 C -0.11 -3.93 6.52 31.65 0.21 -3.72 16 18 C -0.15 -4.61 6.86 30.59 0.21 -4.40 16 19 C 0.51 19.34 8.44 87.87 0.74 20.08 16 20 O -0.60 -26.68 18.03 -3.03 -0.05 -26.73 16 21 N -0.71 -26.56 4.14 -439.16 -1.82 -28.38 16 22 H 0.26 12.39 8.31 -92.71 -0.77 11.62 16 23 H 0.09 4.13 6.17 -2.39 -0.01 4.12 16 24 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 1.91 7.53 -2.39 -0.02 1.89 16 29 H 0.07 2.44 7.02 -2.39 -0.02 2.42 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.09 3.35 6.90 -2.39 -0.02 3.34 16 32 H 0.11 2.98 8.14 -2.38 -0.02 2.97 16 33 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.40 14.52 6.46 -92.71 -0.60 13.93 16 Total: -1.00 -52.50 266.22 3.36 -49.15 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.49 Total: 27.72 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 2.51 Total: -19.33 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.62 Total: -72.05 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -52.50 3.36 -49.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.448 kcal (2) G-P(sol) polarization free energy of solvation -52.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds