Wall clock time and date at job start Mon Mar 30 2020 02:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99989 * 2 1 4 4 H 1.48497 * 109.47003 * 265.98418 * 3 2 1 5 5 H 1.48499 * 109.46764 * 25.98630 * 3 2 1 6 6 H 1.48497 * 109.47182 * 145.98489 * 3 2 1 7 7 C 1.37880 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99782 * 357.86502 * 7 2 1 9 9 C 1.50693 * 120.00339 * 177.87467 * 7 2 1 10 10 H 1.09000 * 109.47311 * 2.80892 * 9 7 2 11 11 C 1.52996 * 109.47311 * 242.81047 * 9 7 2 12 12 C 1.53780 * 113.61620 * 173.51331 * 11 9 7 13 13 C 1.53781 * 87.08161 * 219.93422 * 12 11 9 14 14 C 1.53779 * 87.17375 * 25.39116 * 13 12 11 15 15 C 1.53002 * 109.47170 * 122.80713 * 9 7 2 16 16 H 1.09001 * 110.21319 * 59.52724 * 15 9 7 17 17 C 1.54475 * 110.24612 * 297.50212 * 15 9 7 18 18 C 1.54635 * 101.76770 * 266.41465 * 17 15 9 19 19 C 1.51279 * 104.19107 * 335.20432 * 18 17 15 20 20 O 1.21288 * 124.93938 * 196.27079 * 19 18 17 21 21 N 1.34415 * 110.11987 * 16.24844 * 19 18 17 22 22 H 0.96995 * 120.00020 * 359.97438 * 1 2 3 23 23 H 1.09000 * 112.84950 * 304.71054 * 11 9 7 24 24 H 1.09008 * 113.61436 * 105.38582 * 12 11 9 25 25 H 1.08996 * 113.69203 * 334.49362 * 12 11 9 26 26 H 1.08999 * 113.61134 * 139.98398 * 13 12 11 27 27 H 1.09000 * 113.61382 * 270.80020 * 13 12 11 28 28 H 1.08992 * 113.61433 * 89.15482 * 14 13 12 29 29 H 1.09000 * 113.61269 * 220.06461 * 14 13 12 30 30 H 1.08998 * 110.97022 * 24.53354 * 17 15 9 31 31 H 1.09002 * 110.96845 * 148.29914 * 17 15 9 32 32 H 1.08998 * 110.48546 * 216.52921 * 18 17 15 33 33 H 1.08998 * 110.59476 * 93.93625 * 18 17 15 34 34 H 0.97002 * 124.35308 * 180.37870 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5815 1.9974 -1.3966 5 1 1.4067 2.6756 0.6135 6 1 3.5016 1.4662 0.7832 7 6 2.0046 -1.1940 -0.0005 8 1 1.4652 -2.1290 0.0339 9 6 3.5107 -1.1945 -0.0489 10 1 3.8752 -0.1674 -0.0289 11 6 3.9795 -1.8768 -1.3356 12 6 5.4984 -1.7910 -1.5603 13 6 5.1856 -1.5518 -3.0468 14 6 3.8226 -1.0029 -2.5933 15 6 4.0597 -1.9541 1.1604 16 1 3.6956 -2.9815 1.1568 17 6 3.6489 -1.2439 2.4693 18 6 4.8732 -0.3370 2.7337 19 6 6.0109 -1.0322 2.0188 20 8 7.1883 -0.8076 2.2042 21 7 5.5272 -1.9353 1.1487 22 1 -0.4850 0.8400 0.0004 23 1 3.5771 -2.8831 -1.4518 24 1 6.0217 -2.7280 -1.3694 25 1 5.9661 -0.9374 -1.0697 26 1 5.8253 -0.8020 -3.5124 27 1 5.1144 -2.4692 -3.6311 28 1 3.8301 0.0669 -2.3853 29 1 2.9950 -1.3047 -3.2353 30 1 2.7471 -0.6492 2.3240 31 1 3.5143 -1.9628 3.2775 32 1 5.0767 -0.2729 3.8025 33 1 4.7113 0.6569 2.3167 34 1 6.0772 -2.5016 0.5851 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260554489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:57 Heat of formation + Delta-G solvation = -28.687096 kcal Electronic energy + Delta-G solvation = -16243.685022 eV Core-core repulsion = 13755.494806 eV Total energy + Delta-G solvation = -2488.190215 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.06168 -38.07571 -35.90370 -32.95313 -30.76067 -30.28270 -25.88701 -25.03379 -24.37967 -21.91873 -20.05103 -19.49398 -18.84937 -17.36403 -16.46487 -15.51427 -14.82796 -14.43498 -14.40514 -13.94171 -13.07112 -12.92228 -12.70031 -12.41375 -11.94683 -11.88908 -11.69439 -11.51531 -11.03900 -10.87422 -10.60462 -10.23980 -10.07952 -9.72354 -9.65721 -9.37423 -9.25365 -9.03622 -8.71942 -8.25563 -6.19368 -4.18748 3.09180 3.18329 3.27321 3.30413 3.98912 4.29737 4.97114 5.09027 5.16893 5.27208 5.34704 5.36928 5.51828 5.65104 5.78971 6.06767 6.07703 6.15381 6.23739 6.28671 6.35119 6.38813 6.58253 6.69720 6.78910 6.80878 6.97194 7.02867 7.26682 7.36587 7.56769 7.68876 8.38969 8.77801 8.86259 9.43069 10.93413 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.014902 C = 0.010757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.230493 B = 1878.469502 C = 2602.309885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.078 3.922 3 Si 0.866 3.134 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.261 1.261 7 C -0.501 4.501 8 H 0.076 0.924 9 C 0.011 3.989 10 H 0.043 0.957 11 C -0.088 4.088 12 C -0.147 4.147 13 C -0.148 4.148 14 C -0.124 4.124 15 C 0.137 3.863 16 H 0.078 0.922 17 C -0.120 4.120 18 C -0.161 4.161 19 C 0.516 3.484 20 O -0.564 6.564 21 N -0.722 5.722 22 H 0.265 0.735 23 H 0.079 0.921 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 -2.476 -0.001 7.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.124 4.124 3 Si 0.694 3.306 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.540 4.540 8 H 0.094 0.906 9 C -0.009 4.009 10 H 0.061 0.939 11 C -0.107 4.107 12 C -0.184 4.184 13 C -0.185 4.185 14 C -0.161 4.161 15 C 0.033 3.967 16 H 0.096 0.904 17 C -0.158 4.158 18 C -0.201 4.201 19 C 0.303 3.697 20 O -0.444 6.444 21 N -0.376 5.376 22 H 0.075 0.925 23 H 0.097 0.903 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.968 -2.178 0.171 7.303 hybrid contribution 0.495 0.716 -0.413 0.963 sum 7.463 -1.462 -0.242 7.609 Atomic orbital electron populations 1.69874 1.06225 1.27037 1.50168 1.25029 0.94561 0.98537 0.94297 0.87094 0.80211 0.84251 0.79034 1.20162 1.21630 1.18624 1.20771 0.88044 0.94525 1.50618 0.90617 1.19647 0.96822 0.95251 0.89181 0.93851 1.22619 0.92214 0.99263 0.96558 1.23143 0.98601 1.00530 0.96150 1.22872 0.98579 1.00469 0.96612 1.22762 0.95727 0.99616 0.97998 1.22098 0.76588 1.00638 0.97375 0.90394 1.22580 0.98468 0.98581 0.96196 1.22411 0.95124 1.01095 1.01505 1.20980 0.89192 0.79712 0.79840 1.90667 1.18334 1.67398 1.68017 1.46759 1.09717 1.39942 1.41225 0.92522 0.90302 0.92885 0.90729 0.92696 0.90970 0.91161 0.91949 0.87514 0.91370 0.89130 0.88298 0.75863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 13.96 55.43 0.77 -24.37 16 2 C 0.08 2.02 5.33 -17.82 -0.09 1.92 16 3 Si 0.87 19.87 26.89 -169.99 -4.57 15.30 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -5.64 5.38 56.52 0.30 -5.33 16 7 C -0.50 -12.13 7.57 -34.44 -0.26 -12.39 16 8 H 0.08 2.02 8.06 -52.49 -0.42 1.59 16 9 C 0.01 0.22 1.29 -91.78 -0.12 0.10 16 10 H 0.04 0.94 4.49 -51.93 -0.23 0.71 16 11 C -0.09 -1.60 3.07 -89.72 -0.28 -1.87 16 12 C -0.15 -2.33 5.37 -25.92 -0.14 -2.47 16 13 C -0.15 -2.25 8.08 -25.92 -0.21 -2.46 16 14 C -0.12 -2.26 7.55 -25.83 -0.20 -2.45 16 15 C 0.14 2.42 3.03 -67.01 -0.20 2.21 16 16 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.12 -2.05 6.53 -25.10 -0.16 -2.22 16 18 C -0.16 -2.71 6.86 -26.74 -0.18 -2.89 16 19 C 0.52 9.58 8.43 -10.86 -0.09 9.49 16 20 O -0.56 -12.14 18.03 5.55 0.10 -12.04 16 21 N -0.72 -12.07 4.34 -52.76 -0.23 -12.30 16 22 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 23 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 24 H 0.05 0.74 7.36 -51.92 -0.38 0.36 16 25 H 0.07 1.28 7.64 -51.93 -0.40 0.89 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.39 7.85 -51.93 -0.41 0.98 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.11 2.05 6.77 -51.93 -0.35 1.70 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.10 1.73 7.06 -51.93 -0.37 1.37 16 34 H 0.40 6.11 6.80 -40.82 -0.28 5.84 16 LS Contribution 267.24 15.07 4.03 4.03 Total: -1.00 -27.99 267.24 -6.86 -34.86 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.03 Total: 7.54 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -1.94 Total: -13.02 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.54 Total: -36.67 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.10 Total: -12.04 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.57 Total: 15.30 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.99 -6.86 -34.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.171 kcal (2) G-P(sol) polarization free energy of solvation -27.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds