Wall clock time and date at job start Mon Mar 30 2020 02:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99989 * 2 1 4 4 H 1.48497 * 109.47003 * 265.98418 * 3 2 1 5 5 H 1.48499 * 109.46764 * 25.98630 * 3 2 1 6 6 H 1.48497 * 109.47182 * 145.98489 * 3 2 1 7 7 C 1.37880 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99782 * 357.86502 * 7 2 1 9 9 C 1.50693 * 120.00339 * 177.87467 * 7 2 1 10 10 H 1.09000 * 109.47311 * 2.80892 * 9 7 2 11 11 C 1.52996 * 109.47311 * 242.81047 * 9 7 2 12 12 C 1.53780 * 113.61620 * 173.51331 * 11 9 7 13 13 C 1.53781 * 87.08161 * 219.93422 * 12 11 9 14 14 C 1.53779 * 87.17375 * 25.39116 * 13 12 11 15 15 C 1.53002 * 109.47170 * 122.80713 * 9 7 2 16 16 H 1.09001 * 110.21319 * 59.52724 * 15 9 7 17 17 C 1.54475 * 110.24612 * 297.50212 * 15 9 7 18 18 C 1.54635 * 101.76770 * 266.41465 * 17 15 9 19 19 C 1.51279 * 104.19107 * 335.20432 * 18 17 15 20 20 O 1.21288 * 124.93938 * 196.27079 * 19 18 17 21 21 N 1.34415 * 110.11987 * 16.24844 * 19 18 17 22 22 H 0.96995 * 120.00020 * 359.97438 * 1 2 3 23 23 H 1.09000 * 112.84950 * 304.71054 * 11 9 7 24 24 H 1.09008 * 113.61436 * 105.38582 * 12 11 9 25 25 H 1.08996 * 113.69203 * 334.49362 * 12 11 9 26 26 H 1.08999 * 113.61134 * 139.98398 * 13 12 11 27 27 H 1.09000 * 113.61382 * 270.80020 * 13 12 11 28 28 H 1.08992 * 113.61433 * 89.15482 * 14 13 12 29 29 H 1.09000 * 113.61269 * 220.06461 * 14 13 12 30 30 H 1.08998 * 110.97022 * 24.53354 * 17 15 9 31 31 H 1.09002 * 110.96845 * 148.29914 * 17 15 9 32 32 H 1.08998 * 110.48546 * 216.52921 * 18 17 15 33 33 H 1.08998 * 110.59476 * 93.93625 * 18 17 15 34 34 H 0.97002 * 124.35308 * 180.37870 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5815 1.9974 -1.3966 5 1 1.4067 2.6756 0.6135 6 1 3.5016 1.4662 0.7832 7 6 2.0046 -1.1940 -0.0005 8 1 1.4652 -2.1290 0.0339 9 6 3.5107 -1.1945 -0.0489 10 1 3.8752 -0.1674 -0.0289 11 6 3.9795 -1.8768 -1.3356 12 6 5.4984 -1.7910 -1.5603 13 6 5.1856 -1.5518 -3.0468 14 6 3.8226 -1.0029 -2.5933 15 6 4.0597 -1.9541 1.1604 16 1 3.6956 -2.9815 1.1568 17 6 3.6489 -1.2439 2.4693 18 6 4.8732 -0.3370 2.7337 19 6 6.0109 -1.0322 2.0188 20 8 7.1883 -0.8076 2.2042 21 7 5.5272 -1.9353 1.1487 22 1 -0.4850 0.8400 0.0004 23 1 3.5771 -2.8831 -1.4518 24 1 6.0217 -2.7280 -1.3694 25 1 5.9661 -0.9374 -1.0697 26 1 5.8253 -0.8020 -3.5124 27 1 5.1144 -2.4692 -3.6311 28 1 3.8301 0.0669 -2.3853 29 1 2.9950 -1.3047 -3.2353 30 1 2.7471 -0.6492 2.3240 31 1 3.5143 -1.9628 3.2775 32 1 5.0767 -0.2729 3.8025 33 1 4.7113 0.6569 2.3167 34 1 6.0772 -2.5016 0.5851 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260554489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:57 Heat of formation + Delta-G solvation = -45.920739 kcal Electronic energy + Delta-G solvation = -16244.432329 eV Core-core repulsion = 13755.494806 eV Total energy + Delta-G solvation = -2488.937522 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.52049 -39.51173 -37.39158 -34.84200 -32.23858 -31.89445 -27.41415 -26.44451 -26.00457 -23.36671 -21.51201 -21.01474 -20.29752 -19.08717 -18.09151 -16.93020 -16.50328 -15.96008 -15.87059 -15.48107 -14.62411 -14.56350 -14.21025 -14.02955 -13.41388 -13.34434 -13.24290 -12.94820 -12.73677 -12.35909 -12.08573 -11.79601 -11.67430 -11.36406 -11.06011 -10.99108 -10.82168 -10.73631 -10.51684 -9.76400 -8.21612 -6.21096 1.32964 1.38540 1.43554 1.64426 2.36788 2.58813 3.15570 3.59063 3.79202 3.92516 3.97215 4.03085 4.16153 4.25477 4.39145 4.62918 4.79718 4.81946 4.87636 4.94290 4.99154 5.08922 5.18015 5.23211 5.32920 5.33912 5.49571 5.54574 5.69192 5.81753 6.00724 6.18521 6.41019 6.85802 7.37039 7.43131 8.94781 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.014902 C = 0.010757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.230493 B = 1878.469502 C = 2602.309885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.031 3.969 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.239 1.239 7 C -0.481 4.481 8 H 0.044 0.956 9 C 0.011 3.989 10 H 0.032 0.968 11 C -0.095 4.095 12 C -0.135 4.135 13 C -0.131 4.131 14 C -0.138 4.138 15 C 0.142 3.858 16 H 0.090 0.910 17 C -0.120 4.120 18 C -0.158 4.158 19 C 0.514 3.486 20 O -0.593 6.593 21 N -0.707 5.707 22 H 0.262 0.738 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.647 -3.154 0.117 9.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.166 4.166 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.163 1.163 7 C -0.520 4.520 8 H 0.063 0.937 9 C -0.008 4.008 10 H 0.050 0.950 11 C -0.114 4.114 12 C -0.172 4.172 13 C -0.169 4.169 14 C -0.176 4.176 15 C 0.037 3.963 16 H 0.108 0.892 17 C -0.158 4.158 18 C -0.197 4.197 19 C 0.302 3.698 20 O -0.476 6.476 21 N -0.361 5.361 22 H 0.071 0.929 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.010 -2.878 0.280 9.462 hybrid contribution -0.167 0.843 -0.479 0.984 sum 8.842 -2.035 -0.199 9.076 Atomic orbital electron populations 1.70002 1.07892 1.27486 1.53260 1.25595 0.94872 1.01379 0.94775 0.86345 0.79938 0.80958 0.78926 1.20576 1.22309 1.16324 1.20923 0.90173 0.92817 1.48051 0.93733 1.19598 0.94105 0.95467 0.91672 0.95005 1.22604 0.94517 0.99058 0.95175 1.23014 0.96435 1.01374 0.96426 1.22820 0.96119 1.01405 0.96533 1.22819 0.97713 0.98579 0.98489 1.21900 0.77038 1.00920 0.96417 0.89162 1.22563 0.97551 0.98924 0.96726 1.22422 0.94058 1.00301 1.02956 1.21198 0.88990 0.79714 0.79928 1.90660 1.19591 1.68319 1.69031 1.46596 1.09152 1.39535 1.40805 0.92878 0.89999 0.90232 0.91855 0.91520 0.88892 0.93089 0.92852 0.89821 0.88750 0.86621 0.89011 0.74764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.65 13.96 21.45 0.30 -54.35 16 2 C 0.03 1.64 5.33 84.66 0.45 2.09 16 3 Si 0.91 41.18 26.89 68.60 1.84 43.02 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.24 -9.84 5.38 99.48 0.54 -9.30 16 7 C -0.48 -23.40 7.57 25.60 0.19 -23.21 16 8 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 9 C 0.01 0.45 1.29 -11.54 -0.01 0.43 16 10 H 0.03 1.33 4.49 -2.39 -0.01 1.32 16 11 C -0.09 -3.28 3.07 -10.21 -0.03 -3.31 16 12 C -0.13 -3.84 5.37 31.12 0.17 -3.68 16 13 C -0.13 -3.59 8.08 31.12 0.25 -3.34 16 14 C -0.14 -4.89 7.55 31.18 0.24 -4.65 16 15 C 0.14 4.67 3.03 45.44 0.14 4.81 16 16 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 17 C -0.12 -3.81 6.53 31.65 0.21 -3.60 16 18 C -0.16 -4.86 6.86 30.59 0.21 -4.65 16 19 C 0.51 17.69 8.43 87.90 0.74 18.43 16 20 O -0.59 -24.15 18.03 -3.05 -0.06 -24.20 16 21 N -0.71 -21.52 4.34 -439.44 -1.91 -23.43 16 22 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 23 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 24 H 0.08 1.87 7.36 -2.38 -0.02 1.85 16 25 H 0.06 1.98 7.64 -2.39 -0.02 1.96 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 1.98 7.85 -2.39 -0.02 1.96 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 3.11 6.77 -2.39 -0.02 3.09 16 31 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.09 3.00 7.06 -2.39 -0.02 2.98 16 34 H 0.41 11.05 6.80 -92.71 -0.63 10.42 16 Total: -1.00 -60.36 267.24 3.02 -57.34 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.29 Total: 22.30 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 2.55 Total: -20.67 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.61 Total: -77.78 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.84 Total: 43.02 kcal Total: -60.36 3.02 -57.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.418 kcal (2) G-P(sol) polarization free energy of solvation -60.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds