Wall clock time and date at job start Mon Mar 30 2020 03:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34517 * 125.78995 * 2 1 4 4 C 1.41386 * 106.84179 * 180.02562 * 3 2 1 5 5 C 1.34510 * 106.83962 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.79119 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46943 * 59.99900 * 6 5 4 8 8 C 1.50705 * 109.47141 * 300.00237 * 6 5 4 9 9 H 1.07997 * 120.00102 * 5.21204 * 8 6 5 10 10 C 1.37881 * 119.99860 * 185.20418 * 8 6 5 11 11 N 1.31512 * 120.00065 * 355.29160 * 10 8 6 12 12 Si 1.86803 * 119.99586 * 175.01081 * 10 8 6 13 13 H 1.48498 * 109.46780 * 90.00540 * 12 10 8 14 14 H 1.48496 * 109.46848 * 210.00354 * 12 10 8 15 15 H 1.48500 * 109.47313 * 330.00549 * 12 10 8 16 16 N 1.46898 * 109.47637 * 180.02562 * 6 5 4 17 17 C 1.46909 * 110.99299 * 297.81115 * 16 6 5 18 18 C 1.46898 * 111.00181 * 61.76246 * 16 6 5 19 19 O 1.34303 * 108.42258 * 0.26032 * 5 4 3 20 20 H 1.09002 * 109.47410 * 89.97537 * 1 2 3 21 21 H 1.09004 * 109.47218 * 209.97237 * 1 2 3 22 22 H 1.08999 * 109.47355 * 329.97553 * 1 2 3 23 23 H 1.08000 * 126.57607 * 0.02562 * 3 2 1 24 24 H 1.07994 * 126.57661 * 180.02562 * 4 3 2 25 25 H 1.08996 * 109.47130 * 300.00161 * 7 6 5 26 26 H 1.09002 * 109.46923 * 60.00230 * 7 6 5 27 27 H 1.08993 * 109.46841 * 180.02562 * 7 6 5 28 28 H 0.96999 * 119.99575 * 179.97438 * 11 10 8 29 29 H 1.09000 * 109.46990 * 60.00301 * 17 16 6 30 30 H 1.08999 * 109.46618 * 179.97438 * 17 16 6 31 31 H 1.08996 * 109.46818 * 299.99762 * 17 16 6 32 32 H 1.09000 * 109.46945 * 55.08696 * 18 16 6 33 33 H 1.08997 * 109.47089 * 175.09058 * 18 16 6 34 34 H 1.09002 * 109.47361 * 295.09125 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7705 -1.6378 -0.0030 7 6 5.6168 -1.3828 1.2460 8 6 5.6025 -1.3849 -1.2338 9 1 5.3481 -0.5742 -1.9003 10 6 6.6886 -2.1886 -1.5088 11 7 7.0542 -3.1162 -0.6512 12 14 7.6360 -1.9649 -3.1032 13 1 8.7299 -0.9824 -2.8952 14 1 8.2134 -3.2671 -3.5227 15 1 6.7178 -1.4674 -4.1590 16 7 4.3063 -3.0315 -0.0042 17 6 3.5333 -3.3299 1.2089 18 6 3.5238 -3.3247 -1.2124 19 8 2.2924 -1.0894 -0.0073 20 1 -0.3634 0.0004 -1.0277 21 1 -0.3634 -0.8903 0.5134 22 1 -0.3634 0.8897 0.5142 23 1 1.9664 2.1204 0.0004 24 1 4.5211 1.2434 -0.0004 25 1 5.9614 -0.3487 1.2464 26 1 5.0151 -1.5657 2.1362 27 1 6.4771 -2.0520 1.2447 28 1 7.8181 -3.6818 -0.8450 29 1 2.6653 -2.6724 1.2575 30 1 3.2014 -4.3678 1.1820 31 1 4.1593 -3.1708 2.0868 32 1 4.1134 -3.0787 -2.0956 33 1 3.2665 -4.3837 -1.2306 34 1 2.6109 -2.7291 -1.2076 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260595684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:40 Heat of formation + Delta-G solvation = 28.333784 kcal Electronic energy + Delta-G solvation = -16352.672713 eV Core-core repulsion = 13866.955109 eV Total energy + Delta-G solvation = -2485.717605 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.82469 -36.95951 -32.81105 -32.13387 -31.45715 -29.31445 -27.02667 -25.30447 -24.57093 -22.91473 -20.94692 -20.15125 -18.89988 -16.41642 -15.75212 -15.35141 -14.56082 -14.18606 -13.53164 -13.44345 -13.03719 -12.77917 -12.74926 -12.10418 -11.87818 -11.59059 -11.30663 -11.16555 -11.02374 -10.93680 -10.75481 -10.54150 -10.28525 -10.05443 -9.91865 -9.17367 -9.00383 -8.39740 -7.32833 -6.87364 -5.94116 -4.08601 2.55846 3.30281 3.37960 3.40205 3.50489 3.72073 4.44034 5.16551 5.32214 5.52779 5.64071 5.68634 5.74280 5.93392 6.02184 6.25140 6.41819 6.51535 6.58774 6.65431 6.70468 6.82071 6.85329 6.92559 7.08067 7.13517 7.29829 7.38985 7.75702 7.86931 7.90940 8.20483 8.55833 8.65203 8.99160 9.56890 11.06919 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032602 B = 0.010618 C = 0.009669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.635055 B = 2636.396837 C = 2895.062599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.067 4.067 3 C -0.208 4.208 4 C -0.235 4.235 5 C 0.023 3.977 6 C 0.314 3.686 7 C -0.122 4.122 8 C -0.526 4.526 9 H 0.059 0.941 10 C 0.088 3.912 11 N -0.840 5.840 12 Si 0.886 3.114 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.274 1.274 16 N -0.496 5.496 17 C 0.018 3.982 18 C 0.040 3.960 19 O -0.171 6.171 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.133 0.867 24 H 0.139 0.861 25 H 0.037 0.963 26 H 0.016 0.984 27 H 0.097 0.903 28 H 0.258 0.742 29 H 0.018 0.982 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.942 3.151 1.905 8.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.116 4.116 3 C -0.227 4.227 4 C -0.255 4.255 5 C -0.029 4.029 6 C 0.224 3.776 7 C -0.179 4.179 8 C -0.564 4.564 9 H 0.078 0.922 10 C -0.119 4.119 11 N -0.474 5.474 12 Si 0.713 3.287 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.199 1.199 16 N -0.217 5.217 17 C -0.131 4.131 18 C -0.108 4.108 19 O -0.069 6.069 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.096 0.904 23 H 0.151 0.849 24 H 0.157 0.843 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.115 0.885 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -7.494 2.355 1.950 8.094 hybrid contribution -0.170 0.937 -0.916 1.321 sum -7.665 3.292 1.035 8.406 Atomic orbital electron populations 1.20095 0.86522 1.02846 1.02426 1.22260 0.93667 0.85556 1.10146 1.21426 0.93494 0.98295 1.09529 1.21398 0.96938 0.94618 1.12518 1.25110 0.82539 0.96756 0.98527 1.17802 0.83551 0.79603 0.96609 1.21861 1.01295 1.00926 0.93863 1.20714 1.11519 1.16507 1.07672 0.92249 1.24843 0.96241 0.94648 0.96177 1.70024 1.24668 1.18831 1.33845 0.86717 0.80191 0.77477 0.84325 1.20645 1.21096 1.19928 1.62103 1.35976 1.23860 0.99755 1.22512 0.96141 0.99090 0.95351 1.22196 0.95360 0.97744 0.95516 1.84220 1.17143 1.34001 1.71494 0.91182 0.91435 0.90428 0.84948 0.84336 0.94379 0.96527 0.88484 0.93159 0.96367 0.93601 0.92285 0.90712 0.94418 0.96784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 10.42 36.00 0.37 -0.45 16 2 C -0.07 -1.25 7.32 -35.63 -0.26 -1.51 16 3 C -0.21 -3.93 10.81 -39.70 -0.43 -4.36 16 4 C -0.24 -5.09 10.19 -39.70 -0.40 -5.50 16 5 C 0.02 0.54 4.77 -35.63 -0.17 0.37 16 6 C 0.31 7.72 0.23 -133.90 -0.03 7.69 16 7 C -0.12 -2.89 7.87 37.16 0.29 -2.60 16 8 C -0.53 -13.97 6.37 -34.44 -0.22 -14.18 16 9 H 0.06 1.62 7.66 -52.49 -0.40 1.22 16 10 C 0.09 2.33 5.12 -17.82 -0.09 2.24 16 11 N -0.84 -22.78 10.90 55.43 0.60 -22.18 16 12 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 N -0.50 -11.96 3.95 -238.11 -0.94 -12.90 16 17 C 0.02 0.38 8.83 60.07 0.53 0.91 16 18 C 0.04 0.92 8.97 60.06 0.54 1.46 16 19 O -0.17 -3.73 5.97 5.70 0.03 -3.70 16 20 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 24 H 0.14 2.91 8.06 -52.49 -0.42 2.49 16 25 H 0.04 0.86 7.99 -51.93 -0.41 0.45 16 26 H 0.02 0.35 6.37 -51.93 -0.33 0.02 16 27 H 0.10 2.50 6.31 -51.93 -0.33 2.17 16 28 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.02 0.39 5.60 -51.93 -0.29 0.10 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.23 6.26 -51.93 -0.33 0.91 16 32 H 0.07 1.84 6.77 -51.93 -0.35 1.49 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.01 0.32 5.67 -51.93 -0.29 0.02 16 LS Contribution 270.34 15.07 4.07 4.07 Total: -1.00 -28.41 270.34 -5.95 -34.37 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.83 Total: 0.64 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 0.13 Total: -15.93 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.34 Total: -35.08 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: 0.03 Total: -3.70 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.41 -5.95 -34.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.699 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds