Wall clock time and date at job start Mon Mar 30 2020 02:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99568 * 2 1 4 4 H 1.48497 * 109.47096 * 269.99963 * 3 2 1 5 5 H 1.48491 * 109.47029 * 30.00455 * 3 2 1 6 6 H 1.48499 * 109.46826 * 150.00438 * 3 2 1 7 7 C 1.37880 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99544 * 184.60398 * 7 2 1 9 9 C 1.50695 * 120.00331 * 4.60616 * 7 2 1 10 10 H 1.09004 * 109.46642 * 354.73723 * 9 7 2 11 11 C 1.52995 * 109.47298 * 114.73802 * 9 7 2 12 12 C 1.53780 * 113.69087 * 200.93439 * 11 9 7 13 13 C 1.53779 * 87.08165 * 139.99365 * 12 11 9 14 14 C 1.53781 * 113.61438 * 298.47003 * 11 9 7 15 15 C 1.52999 * 109.46942 * 234.74007 * 9 7 2 16 16 H 1.09000 * 110.43454 * 300.66773 * 15 9 7 17 17 C 1.54625 * 110.48714 * 178.12785 * 15 9 7 18 18 C 1.54479 * 101.76775 * 216.52393 * 17 15 9 19 19 N 1.46769 * 105.47148 * 25.41613 * 18 17 15 20 20 C 1.34414 * 111.30323 * 342.98380 * 19 18 17 21 21 O 1.21274 * 124.94968 * 180.44545 * 20 19 18 22 22 H 0.96992 * 120.00138 * 354.99618 * 1 2 3 23 23 H 1.09003 * 112.84662 * 69.66896 * 11 9 7 24 24 H 1.09003 * 113.61733 * 254.54457 * 12 11 9 25 25 H 1.09002 * 113.61244 * 25.44556 * 12 11 9 26 26 H 1.08999 * 113.61260 * 220.01868 * 13 12 11 27 27 H 1.09003 * 113.69269 * 89.12630 * 13 12 11 28 28 H 1.09000 * 113.61549 * 334.48417 * 14 11 9 29 29 H 1.09004 * 113.61143 * 105.38849 * 14 11 9 30 30 H 1.09007 * 110.97235 * 334.63972 * 17 15 9 31 31 H 1.08995 * 110.97044 * 98.36500 * 17 15 9 32 32 H 1.09001 * 110.24618 * 144.41462 * 18 17 15 33 33 H 1.08995 * 110.24684 * 266.41583 * 18 17 15 34 34 H 0.97000 * 124.34668 * 162.98524 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0820 -1.1955 0.0745 9 6 1.2548 -2.4970 -0.1059 10 1 0.1827 -2.3025 -0.0782 11 6 1.6141 -3.1871 -1.4233 12 6 0.5755 -4.2248 -1.8806 13 6 0.7968 -3.7008 -3.3093 14 6 1.2323 -2.3717 -2.6700 15 6 1.6393 -3.4028 1.0657 16 1 2.7116 -3.5980 1.0599 17 6 0.8474 -4.7296 1.0065 18 6 0.5914 -5.0107 2.5038 19 7 0.6307 -3.6989 3.1608 20 6 1.2189 -2.7781 2.3780 21 8 1.3888 -1.6159 2.6798 22 1 -0.4850 0.8368 0.0733 23 1 2.6390 -3.5580 -1.4410 24 1 0.8975 -5.2566 -1.7391 25 1 -0.4274 -4.0370 -1.4971 26 1 -0.1204 -3.6245 -3.8933 27 1 1.5978 -4.2113 -3.8439 28 1 0.4091 -1.6773 -2.5023 29 1 2.0848 -1.9073 -3.1659 30 1 -0.0914 -4.5999 0.4680 31 1 1.4463 -5.5216 0.5571 32 1 -0.3872 -5.4712 2.6392 33 1 1.3720 -5.6571 2.9050 34 1 0.2776 -3.5195 4.0463 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260602003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:02 Heat of formation + Delta-G solvation = -45.411623 kcal Electronic energy + Delta-G solvation = -16167.635820 eV Core-core repulsion = 13678.720375 eV Total energy + Delta-G solvation = -2488.915445 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13348 -39.28631 -36.89712 -35.03283 -32.93477 -29.93344 -27.42873 -26.35492 -25.82906 -23.15272 -22.02447 -20.38511 -19.91892 -18.43695 -17.88477 -16.91169 -16.53344 -16.01988 -15.34672 -15.15044 -14.53064 -14.30290 -14.03492 -13.57041 -13.33681 -13.08872 -12.92211 -12.82265 -12.54323 -12.42254 -12.36032 -11.78962 -11.26228 -11.12009 -10.99060 -10.71029 -10.54094 -10.37910 -10.02286 -9.73870 -7.97512 -5.95426 1.34175 1.37493 1.44921 2.06939 2.51467 2.79098 3.35306 3.93375 3.97750 4.09893 4.14829 4.24591 4.36558 4.48110 4.59399 4.82791 4.86679 4.99650 5.08042 5.17662 5.20568 5.24987 5.29493 5.40396 5.42944 5.62409 5.74987 5.82835 5.93886 6.12945 6.31521 6.34109 6.53524 7.12910 7.66084 7.75035 9.11223 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.014975 C = 0.009311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.102411 B = 1869.355495 C = 3006.358724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.035 3.965 3 Si 0.922 3.078 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.484 4.484 8 H 0.031 0.969 9 C 0.060 3.940 10 H 0.033 0.967 11 C -0.092 4.092 12 C -0.123 4.123 13 C -0.134 4.134 14 C -0.128 4.128 15 C -0.113 4.113 16 H 0.086 0.914 17 C -0.123 4.123 18 C 0.104 3.896 19 N -0.744 5.744 20 C 0.508 3.492 21 O -0.561 6.561 22 H 0.250 0.750 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 -14.620 -0.573 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.162 4.162 3 Si 0.750 3.250 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.523 4.523 8 H 0.050 0.950 9 C 0.041 3.959 10 H 0.051 0.949 11 C -0.111 4.111 12 C -0.160 4.160 13 C -0.171 4.171 14 C -0.166 4.166 15 C -0.135 4.135 16 H 0.104 0.896 17 C -0.160 4.160 18 C -0.019 4.019 19 N -0.401 5.401 20 C 0.295 3.705 21 O -0.437 6.437 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.375 -13.905 -0.605 13.923 hybrid contribution 0.234 1.882 0.721 2.029 sum 0.609 -12.022 0.116 12.038 Atomic orbital electron populations 1.69941 1.06755 1.26113 1.53693 1.25241 0.95140 1.00956 0.94913 0.86129 0.79022 0.82078 0.77772 1.19799 1.22121 1.20475 1.21049 0.92041 0.92128 1.47044 0.95029 1.18712 0.96941 0.90999 0.89292 0.94869 1.22530 0.98004 0.95716 0.94816 1.22933 0.98651 0.98897 0.95549 1.22846 1.01198 0.96376 0.96680 1.22638 0.99583 0.96499 0.97871 1.22066 1.00549 0.96682 0.94185 0.89635 1.22817 1.01144 0.96190 0.95878 1.22242 1.03615 0.83545 0.92499 1.46380 1.62162 1.11706 1.19834 1.21467 0.76440 0.84993 0.87615 1.90680 1.56991 1.18636 1.77421 0.94104 0.90597 0.89381 0.91859 0.91969 0.88942 0.93612 0.93859 0.90684 0.86976 0.88596 0.89290 0.75721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.41 12.61 21.45 0.27 -57.14 16 2 C 0.03 2.08 5.30 84.66 0.45 2.53 16 3 Si 0.92 48.53 29.54 68.60 2.03 50.56 16 4 H -0.27 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.29 -15.62 7.11 99.48 0.71 -14.91 16 6 H -0.28 -14.69 7.11 99.48 0.71 -13.99 16 7 C -0.48 -27.48 6.24 25.60 0.16 -27.32 16 8 H 0.03 1.84 7.82 -2.91 -0.02 1.81 16 9 C 0.06 2.84 1.42 -11.54 -0.02 2.82 16 10 H 0.03 1.83 6.76 -2.39 -0.02 1.82 16 11 C -0.09 -3.55 2.96 -10.27 -0.03 -3.58 16 12 C -0.12 -3.72 5.58 31.12 0.17 -3.55 16 13 C -0.13 -4.00 8.08 31.12 0.25 -3.75 16 14 C -0.13 -5.19 7.15 31.12 0.22 -4.96 16 15 C -0.11 -4.48 2.49 -10.80 -0.03 -4.50 16 16 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 17 C -0.12 -3.29 5.18 31.65 0.16 -3.12 16 18 C 0.10 2.34 7.78 86.83 0.68 3.02 16 19 N -0.74 -24.14 6.24 -459.80 -2.87 -27.00 16 20 C 0.51 22.89 7.83 87.90 0.69 23.57 16 21 O -0.56 -32.11 16.32 -3.01 -0.05 -32.16 16 22 H 0.25 15.22 8.32 -92.71 -0.77 14.44 16 23 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 24 H 0.09 2.04 7.97 -2.39 -0.02 2.02 16 25 H 0.06 2.08 7.32 -2.39 -0.02 2.06 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.05 2.20 8.10 -2.39 -0.02 2.18 16 29 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.07 2.13 6.30 -2.38 -0.02 2.11 16 31 H 0.11 2.22 8.06 -2.39 -0.02 2.20 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.40 11.65 8.96 -92.71 -0.83 10.81 16 Total: -1.00 -74.31 272.65 2.34 -71.97 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.25 Total: 12.61 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 2.71 Total: -18.84 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.60 Total: -84.15 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.05 Total: -32.16 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -74.31 2.34 -71.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.557 kcal (2) G-P(sol) polarization free energy of solvation -74.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds