Wall clock time and date at job start Mon Mar 30 2020 02:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48501 * 109.47225 * 270.32470 * 3 2 1 5 5 H 1.48502 * 109.47427 * 30.32332 * 3 2 1 6 6 H 1.48501 * 109.47026 * 150.32725 * 3 2 1 7 7 C 1.37873 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00254 * 351.08721 * 7 2 1 9 9 C 1.50701 * 119.99677 * 171.08256 * 7 2 1 10 10 H 1.08994 * 109.47291 * 4.75191 * 9 7 2 11 11 C 1.53001 * 109.46990 * 124.74818 * 9 7 2 12 12 C 1.53785 * 113.61674 * 278.48117 * 11 9 7 13 13 C 1.53952 * 87.01789 * 220.04508 * 12 11 9 14 14 C 1.53783 * 87.11456 * 25.36400 * 13 12 11 15 15 C 1.52998 * 109.47211 * 244.74737 * 9 7 2 16 16 H 1.08999 * 110.43571 * 185.89486 * 15 9 7 17 17 C 1.54859 * 110.49040 * 308.55511 * 15 9 7 18 18 C 1.54483 * 101.65476 * 93.88307 * 17 15 9 19 19 N 1.46759 * 105.55270 * 25.43451 * 18 17 15 20 20 C 1.34413 * 111.30060 * 342.94015 * 19 18 17 21 21 O 1.21284 * 124.94316 * 180.39281 * 20 19 18 22 22 H 0.96997 * 119.99969 * 0.02562 * 1 2 3 23 23 H 1.09001 * 112.84783 * 49.67573 * 11 9 7 24 24 H 1.08994 * 113.60989 * 334.56558 * 12 11 9 25 25 H 1.08998 * 113.61037 * 105.46793 * 12 11 9 26 26 H 1.08992 * 113.54282 * 270.80407 * 13 12 11 27 27 H 1.09007 * 113.74104 * 139.94224 * 13 12 11 28 28 H 1.09001 * 113.61166 * 220.09291 * 14 13 12 29 29 H 1.08998 * 113.61264 * 89.18358 * 14 13 12 30 30 H 1.08994 * 111.04353 * 335.79386 * 17 15 9 31 31 H 1.09003 * 110.99636 * 211.94902 * 17 15 9 32 32 H 1.09003 * 110.24592 * 266.38410 * 18 17 15 33 33 H 1.09007 * 110.24594 * 144.48132 * 18 17 15 34 34 H 0.96998 * 124.34782 * 162.96792 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4898 2.0504 -1.4000 5 1 1.4501 2.6507 0.7069 6 1 3.5502 1.4382 0.6931 7 6 2.0045 -1.1940 0.0005 8 1 1.4743 -2.1236 0.1459 9 6 3.4979 -1.2020 -0.2018 10 1 3.8640 -0.1763 -0.2463 11 6 4.1667 -1.9320 0.9648 12 6 4.3503 -1.0563 2.2155 13 6 5.7284 -1.7223 2.3810 14 6 5.7006 -1.9776 0.8648 15 6 3.8314 -1.9199 -1.5111 16 1 4.9104 -2.0267 -1.6224 17 6 3.1393 -3.3043 -1.5618 18 6 1.8327 -2.9725 -2.3162 19 7 2.1348 -1.7842 -3.1227 20 6 3.2492 -1.1703 -2.6891 21 8 3.7197 -0.1622 -3.1722 22 1 -0.4850 0.8400 -0.0004 23 1 3.7136 -2.9013 1.1730 24 1 4.4041 0.0103 1.9976 25 1 3.6518 -1.2906 3.0188 26 1 5.7026 -2.6338 2.9779 27 1 6.5138 -1.0340 2.6935 28 1 6.0906 -2.9547 0.5794 29 1 6.1242 -1.1633 0.2770 30 1 2.9273 -3.6728 -0.5582 31 1 3.7408 -4.0214 -2.1203 32 1 1.0331 -2.7547 -1.6081 33 1 1.5481 -3.8039 -2.9614 34 1 1.5989 -1.4806 -3.8720 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260602021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:05 Heat of formation + Delta-G solvation = -27.008919 kcal Electronic energy + Delta-G solvation = -16370.056128 eV Core-core repulsion = 13881.938683 eV Total energy + Delta-G solvation = -2488.117444 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.77905 -37.94889 -35.49269 -33.03739 -31.43268 -28.40154 -26.32046 -24.90788 -24.33826 -21.63231 -20.59564 -19.09513 -18.27912 -17.00607 -16.46351 -15.14506 -14.87939 -14.54653 -13.87205 -13.79879 -12.77867 -12.64311 -12.54368 -12.34286 -11.93889 -11.87105 -11.52441 -11.22175 -10.91476 -10.73984 -10.58670 -10.08761 -9.97974 -9.72463 -9.50472 -9.15432 -8.90607 -8.75257 -8.39210 -8.11966 -6.10387 -4.07487 3.37447 3.42582 3.52306 3.59434 4.31931 4.47324 5.15754 5.25582 5.34640 5.37031 5.41275 5.49139 5.58494 5.76929 6.00224 6.11614 6.23414 6.31751 6.35631 6.41536 6.42797 6.54441 6.64823 6.74504 6.84022 6.91141 7.04755 7.10797 7.39166 7.68819 7.76190 7.90127 8.47045 8.92076 9.19814 9.56151 11.01298 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.016234 C = 0.011914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.510241 B = 1724.381556 C = 2349.545223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.083 3.917 3 Si 0.858 3.142 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.033 3.967 10 H 0.044 0.956 11 C -0.083 4.083 12 C -0.129 4.129 13 C -0.146 4.146 14 C -0.147 4.147 15 C -0.111 4.111 16 H 0.076 0.924 17 C -0.115 4.115 18 C 0.112 3.888 19 N -0.721 5.721 20 C 0.539 3.461 21 O -0.564 6.564 22 H 0.262 0.738 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 -6.936 -0.002 9.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.120 4.120 3 Si 0.686 3.314 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.544 4.544 8 H 0.098 0.902 9 C 0.014 3.986 10 H 0.062 0.938 11 C -0.101 4.101 12 C -0.166 4.166 13 C -0.184 4.184 14 C -0.185 4.185 15 C -0.133 4.133 16 H 0.094 0.906 17 C -0.153 4.153 18 C -0.012 4.012 19 N -0.373 5.373 20 C 0.327 3.673 21 O -0.444 6.444 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.510 -6.347 -0.147 9.093 hybrid contribution -0.006 1.124 -0.286 1.159 sum 6.503 -5.223 -0.433 8.353 Atomic orbital electron populations 1.69893 1.06181 1.26864 1.50332 1.24953 0.94516 0.98569 0.93928 0.87139 0.80381 0.84544 0.79353 1.19623 1.21933 1.18646 1.20873 0.89208 0.94624 1.49697 0.90224 1.19105 0.97207 0.94817 0.87499 0.93786 1.22533 0.92364 0.98982 0.96270 1.22869 0.95393 0.99641 0.98739 1.22872 0.98249 1.00247 0.97018 1.23043 0.98963 1.00701 0.95765 1.22217 0.98624 0.95594 0.96826 0.90594 1.22482 0.95517 0.96003 1.01271 1.22062 0.99352 0.85723 0.94111 1.45953 1.27691 1.29718 1.33957 1.20835 0.80301 0.83172 0.83011 1.90627 1.65783 1.25284 1.62699 0.92826 0.90090 0.90723 0.92062 0.91025 0.92701 0.92555 0.90850 0.89344 0.92494 0.88802 0.92976 0.76601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 13.96 55.43 0.77 -25.18 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 3 Si 0.86 22.23 27.16 -169.99 -4.62 17.61 16 4 H -0.27 -7.49 7.11 56.52 0.40 -7.09 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.26 -6.44 5.45 56.52 0.31 -6.14 16 7 C -0.51 -12.62 6.11 -34.44 -0.21 -12.83 16 8 H 0.08 2.07 6.33 -52.49 -0.33 1.74 16 9 C 0.03 0.73 1.31 -91.77 -0.12 0.60 16 10 H 0.04 1.08 4.44 -51.93 -0.23 0.85 16 11 C -0.08 -1.54 2.70 -89.80 -0.24 -1.78 16 12 C -0.13 -2.36 7.63 -25.83 -0.20 -2.55 16 13 C -0.15 -2.20 8.09 -25.83 -0.21 -2.41 16 14 C -0.15 -2.35 6.65 -25.92 -0.17 -2.53 16 15 C -0.11 -2.20 2.77 -90.51 -0.25 -2.45 16 16 H 0.08 1.41 7.35 -51.93 -0.38 1.03 16 17 C -0.11 -1.89 6.09 -24.97 -0.15 -2.04 16 18 C 0.11 1.92 6.92 -3.12 -0.02 1.90 16 19 N -0.72 -14.07 6.22 -59.20 -0.37 -14.44 16 20 C 0.54 12.15 7.26 -10.86 -0.08 12.07 16 21 O -0.56 -14.76 18.03 5.55 0.10 -14.66 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.08 1.45 7.15 -51.93 -0.37 1.08 16 24 H 0.07 1.49 6.90 -51.93 -0.36 1.14 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.23 8.10 -51.93 -0.42 0.80 16 30 H 0.09 1.44 6.23 -51.93 -0.32 1.11 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.89 6.20 -51.93 -0.32 1.56 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.40 7.08 8.96 -40.82 -0.37 6.71 16 LS Contribution 264.85 15.07 3.99 3.99 Total: -1.00 -30.50 264.85 -6.74 -37.24 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.87 Total: 5.27 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.75 Total: -9.84 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.41 Total: -39.62 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.10 Total: -14.66 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.62 Total: 17.61 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.50 -6.74 -37.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.234 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds