Wall clock time and date at job start Mon Mar 30 2020 02:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48501 * 109.47225 * 270.32470 * 3 2 1 5 5 H 1.48502 * 109.47427 * 30.32332 * 3 2 1 6 6 H 1.48501 * 109.47026 * 150.32725 * 3 2 1 7 7 C 1.37873 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00254 * 351.08721 * 7 2 1 9 9 C 1.50701 * 119.99677 * 171.08256 * 7 2 1 10 10 H 1.08994 * 109.47291 * 4.75191 * 9 7 2 11 11 C 1.53001 * 109.46990 * 124.74818 * 9 7 2 12 12 C 1.53785 * 113.61674 * 278.48117 * 11 9 7 13 13 C 1.53952 * 87.01789 * 220.04508 * 12 11 9 14 14 C 1.53783 * 87.11456 * 25.36400 * 13 12 11 15 15 C 1.52998 * 109.47211 * 244.74737 * 9 7 2 16 16 H 1.08999 * 110.43571 * 185.89486 * 15 9 7 17 17 C 1.54859 * 110.49040 * 308.55511 * 15 9 7 18 18 C 1.54483 * 101.65476 * 93.88307 * 17 15 9 19 19 N 1.46759 * 105.55270 * 25.43451 * 18 17 15 20 20 C 1.34413 * 111.30060 * 342.94015 * 19 18 17 21 21 O 1.21284 * 124.94316 * 180.39281 * 20 19 18 22 22 H 0.96997 * 119.99969 * 0.02562 * 1 2 3 23 23 H 1.09001 * 112.84783 * 49.67573 * 11 9 7 24 24 H 1.08994 * 113.60989 * 334.56558 * 12 11 9 25 25 H 1.08998 * 113.61037 * 105.46793 * 12 11 9 26 26 H 1.08992 * 113.54282 * 270.80407 * 13 12 11 27 27 H 1.09007 * 113.74104 * 139.94224 * 13 12 11 28 28 H 1.09001 * 113.61166 * 220.09291 * 14 13 12 29 29 H 1.08998 * 113.61264 * 89.18358 * 14 13 12 30 30 H 1.08994 * 111.04353 * 335.79386 * 17 15 9 31 31 H 1.09003 * 110.99636 * 211.94902 * 17 15 9 32 32 H 1.09003 * 110.24592 * 266.38410 * 18 17 15 33 33 H 1.09007 * 110.24594 * 144.48132 * 18 17 15 34 34 H 0.96998 * 124.34782 * 162.96792 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4898 2.0504 -1.4000 5 1 1.4501 2.6507 0.7069 6 1 3.5502 1.4382 0.6931 7 6 2.0045 -1.1940 0.0005 8 1 1.4743 -2.1236 0.1459 9 6 3.4979 -1.2020 -0.2018 10 1 3.8640 -0.1763 -0.2463 11 6 4.1667 -1.9320 0.9648 12 6 4.3503 -1.0563 2.2155 13 6 5.7284 -1.7223 2.3810 14 6 5.7006 -1.9776 0.8648 15 6 3.8314 -1.9199 -1.5111 16 1 4.9104 -2.0267 -1.6224 17 6 3.1393 -3.3043 -1.5618 18 6 1.8327 -2.9725 -2.3162 19 7 2.1348 -1.7842 -3.1227 20 6 3.2492 -1.1703 -2.6891 21 8 3.7197 -0.1622 -3.1722 22 1 -0.4850 0.8400 -0.0004 23 1 3.7136 -2.9013 1.1730 24 1 4.4041 0.0103 1.9976 25 1 3.6518 -1.2906 3.0188 26 1 5.7026 -2.6338 2.9779 27 1 6.5138 -1.0340 2.6935 28 1 6.0906 -2.9547 0.5794 29 1 6.1242 -1.1633 0.2770 30 1 2.9273 -3.6728 -0.5582 31 1 3.7408 -4.0214 -2.1203 32 1 1.0331 -2.7547 -1.6081 33 1 1.5481 -3.8039 -2.9614 34 1 1.5989 -1.4806 -3.8720 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260602021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:04 Heat of formation + Delta-G solvation = -48.240762 kcal Electronic energy + Delta-G solvation = -16370.976809 eV Core-core repulsion = 13881.938683 eV Total energy + Delta-G solvation = -2489.038126 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.40152 -39.41377 -37.20753 -34.92959 -33.23156 -29.97965 -27.98428 -26.32017 -25.93988 -23.17115 -22.12761 -20.71257 -19.83044 -18.89395 -18.15493 -16.80211 -16.58691 -16.00145 -15.71245 -15.36242 -14.51608 -14.42092 -14.25970 -14.03566 -13.41703 -13.34608 -13.07378 -12.94662 -12.75739 -12.23353 -12.07628 -11.87864 -11.48039 -11.31542 -11.19556 -10.80207 -10.70418 -10.51429 -10.27396 -9.73955 -8.25606 -6.17445 1.23272 1.31309 1.37147 1.83743 2.34813 2.78481 3.13242 3.74751 3.91226 4.00185 4.07527 4.15937 4.21107 4.41026 4.57380 4.85283 4.89192 4.95314 4.96785 5.04702 5.07015 5.18444 5.19921 5.27479 5.33114 5.47887 5.57099 5.60963 5.76399 5.91751 6.15166 6.26836 6.40348 6.86384 7.45644 7.51010 8.88927 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.016234 C = 0.011914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.510241 B = 1724.381556 C = 2349.545223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.039 3.961 3 Si 0.887 3.113 4 H -0.302 1.302 5 H -0.294 1.294 6 H -0.246 1.246 7 C -0.470 4.470 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.014 0.986 11 C -0.086 4.086 12 C -0.145 4.145 13 C -0.128 4.128 14 C -0.138 4.138 15 C -0.111 4.111 16 H 0.095 0.905 17 C -0.104 4.104 18 C 0.108 3.892 19 N -0.716 5.716 20 C 0.521 3.479 21 O -0.612 6.612 22 H 0.257 0.743 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.105 -9.647 0.484 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.158 4.158 3 Si 0.716 3.284 4 H -0.229 1.229 5 H -0.221 1.221 6 H -0.170 1.170 7 C -0.508 4.508 8 H 0.090 0.910 9 C 0.010 3.990 10 H 0.032 0.968 11 C -0.105 4.105 12 C -0.183 4.183 13 C -0.165 4.165 14 C -0.176 4.176 15 C -0.133 4.133 16 H 0.113 0.887 17 C -0.141 4.141 18 C -0.015 4.015 19 N -0.367 5.367 20 C 0.309 3.691 21 O -0.495 6.495 22 H 0.066 0.934 23 H 0.113 0.887 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 8.239 -9.089 0.362 12.272 hybrid contribution -0.549 1.912 -0.476 2.046 sum 7.689 -7.176 -0.114 10.518 Atomic orbital electron populations 1.69964 1.06973 1.26655 1.53887 1.25344 0.94714 1.00147 0.95632 0.86699 0.80655 0.83580 0.77438 1.22939 1.22121 1.17027 1.21135 0.90864 0.93365 1.45426 0.90963 1.19126 0.95176 0.94353 0.90389 0.96821 1.22513 0.94426 0.99019 0.94524 1.22926 0.98134 0.98382 0.98808 1.22814 0.96003 1.00976 0.96723 1.22965 0.96237 1.01923 0.96446 1.22179 1.00114 0.96952 0.94006 0.88689 1.22544 0.94788 0.94522 1.02262 1.22199 0.99038 0.85979 0.94293 1.46099 1.26723 1.30011 1.33854 1.21469 0.81063 0.82910 0.83634 1.90592 1.67290 1.27394 1.64253 0.93402 0.88665 0.93334 0.92246 0.88548 0.91565 0.89637 0.91981 0.88664 0.88466 0.91967 0.88443 0.76010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 13.96 21.45 0.30 -55.13 16 2 C 0.04 2.19 5.47 84.65 0.46 2.65 16 3 Si 0.89 46.99 27.16 68.60 1.86 48.85 16 4 H -0.30 -17.44 7.11 99.48 0.71 -16.73 16 5 H -0.29 -15.45 7.11 99.48 0.71 -14.75 16 6 H -0.25 -12.25 5.45 99.48 0.54 -11.71 16 7 C -0.47 -23.23 6.11 25.60 0.16 -23.07 16 8 H 0.07 3.69 6.33 -2.91 -0.02 3.67 16 9 C 0.03 1.23 1.31 -11.54 -0.02 1.22 16 10 H 0.01 0.67 4.44 -2.39 -0.01 0.66 16 11 C -0.09 -2.96 2.70 -10.26 -0.03 -2.98 16 12 C -0.14 -5.02 7.63 31.18 0.24 -4.78 16 13 C -0.13 -3.34 8.09 31.18 0.25 -3.09 16 14 C -0.14 -3.87 6.65 31.12 0.21 -3.66 16 15 C -0.11 -4.14 2.77 -10.72 -0.03 -4.17 16 16 H 0.10 3.21 7.35 -2.39 -0.02 3.20 16 17 C -0.10 -2.98 6.09 31.73 0.19 -2.79 16 18 C 0.11 3.43 6.92 86.83 0.60 4.03 16 19 N -0.72 -27.10 6.22 -459.81 -2.86 -29.96 16 20 C 0.52 23.12 7.26 87.90 0.64 23.76 16 21 O -0.61 -32.47 18.03 -3.04 -0.05 -32.53 16 22 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 23 H 0.10 3.02 7.15 -2.39 -0.02 3.01 16 24 H 0.05 1.91 6.90 -2.39 -0.02 1.90 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.10 2.09 8.14 -2.39 -0.02 2.08 16 27 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.89 8.10 -2.39 -0.02 1.87 16 30 H 0.09 2.66 6.23 -2.39 -0.01 2.65 16 31 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 2.41 6.20 -2.39 -0.01 2.39 16 33 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.40 14.11 8.96 -92.71 -0.83 13.28 16 Total: -1.00 -68.16 264.85 2.03 -66.12 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.11 Total: 15.52 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 2.68 Total: -12.88 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -2.56 Total: -85.09 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.05 Total: -32.53 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.86 Total: 48.85 kcal Total: -68.16 2.03 -66.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.884 kcal (2) G-P(sol) polarization free energy of solvation -68.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds