Wall clock time and date at job start Mon Mar 30 2020 02:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00150 * 2 1 4 4 H 1.48500 * 109.47186 * 240.00137 * 3 2 1 5 5 H 1.48498 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47244 * 120.00301 * 3 2 1 7 7 C 1.37875 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00141 * 187.50704 * 7 2 1 9 9 C 1.50705 * 119.99999 * 7.51489 * 7 2 1 10 10 H 1.08995 * 109.46912 * 335.43912 * 9 7 2 11 11 C 1.53008 * 109.46713 * 215.44268 * 9 7 2 12 12 C 1.53781 * 113.61191 * 174.81318 * 11 9 7 13 13 C 1.53778 * 87.08387 * 220.01915 * 12 11 9 14 14 C 1.53785 * 87.17112 * 25.39177 * 13 12 11 15 15 C 1.52996 * 109.47310 * 95.44170 * 9 7 2 16 16 H 1.09008 * 110.43286 * 172.41945 * 15 9 7 17 17 C 1.54628 * 110.48563 * 49.73851 * 15 9 7 18 18 C 1.54486 * 101.76147 * 266.11710 * 17 15 9 19 19 N 1.46767 * 105.47405 * 334.58376 * 18 17 15 20 20 C 1.34418 * 111.30029 * 17.02041 * 19 18 17 21 21 O 1.21281 * 124.94309 * 179.62799 * 20 19 18 22 22 H 0.97004 * 119.99638 * 4.94576 * 1 2 3 23 23 H 1.08991 * 112.85063 * 306.00665 * 11 9 7 24 24 H 1.08997 * 113.61122 * 105.46618 * 12 11 9 25 25 H 1.09006 * 113.61642 * 334.56816 * 12 11 9 26 26 H 1.08996 * 113.61654 * 139.98459 * 13 12 11 27 27 H 1.09001 * 113.61343 * 270.80640 * 13 12 11 28 28 H 1.08992 * 113.61568 * 89.15808 * 14 13 12 29 29 H 1.09005 * 113.61443 * 220.06740 * 14 13 12 30 30 H 1.08996 * 110.97117 * 24.23867 * 17 15 9 31 31 H 1.09000 * 110.96571 * 148.00297 * 17 15 9 32 32 H 1.08997 * 110.24205 * 215.58780 * 18 17 15 33 33 H 1.08999 * 110.24445 * 93.59103 * 18 17 15 34 34 H 0.96998 * 124.34579 * 196.99517 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0776 -1.1982 0.1217 9 6 1.2607 -2.4935 -0.1718 10 1 0.2270 -2.3655 0.1495 11 6 1.9277 -3.5785 0.6762 12 6 1.1698 -4.9166 0.6716 13 6 1.4993 -5.0184 2.1702 14 6 1.5932 -3.4834 2.1760 15 6 1.2895 -2.9074 -1.6444 16 1 0.8741 -3.9078 -1.7667 17 6 2.7330 -2.8468 -2.1954 18 6 2.7772 -1.4289 -2.8073 19 7 1.3846 -1.0996 -3.1333 20 6 0.5275 -1.9106 -2.4896 21 8 -0.6809 -1.8523 -2.5746 22 1 -0.4850 0.8370 -0.0724 23 1 2.9935 -3.6796 0.4721 24 1 1.6476 -5.6868 0.0661 25 1 0.1045 -4.8144 0.4646 26 1 0.6784 -5.4079 2.7722 27 1 2.4477 -5.5146 2.3760 28 1 0.6439 -2.9887 2.3811 29 1 2.4123 -3.0984 2.7833 30 1 3.4620 -2.9476 -1.3914 31 1 2.8907 -3.6069 -2.9606 32 1 3.3867 -1.4270 -3.7109 33 1 3.1734 -0.7176 -2.0826 34 1 1.1172 -0.3878 -3.7356 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260602037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:07 Heat of formation + Delta-G solvation = -27.946049 kcal Electronic energy + Delta-G solvation = -16387.093680 eV Core-core repulsion = 13898.935598 eV Total energy + Delta-G solvation = -2488.158081 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.50614 -37.74912 -35.20669 -32.99541 -31.11405 -27.98603 -26.11770 -24.76771 -24.30587 -21.59513 -20.52948 -18.88037 -18.18863 -16.41834 -16.08092 -15.16980 -14.78407 -14.43135 -13.90022 -13.55896 -12.71110 -12.37314 -12.22718 -12.11264 -11.73297 -11.64066 -11.33473 -11.04587 -10.91154 -10.67645 -10.46232 -10.36856 -9.82404 -9.68092 -9.29898 -9.12586 -8.75693 -8.41875 -8.27185 -7.95930 -5.97198 -3.99699 3.27022 3.34732 3.36600 3.97084 4.42822 4.51416 5.28199 5.42118 5.49634 5.52192 5.54839 5.66653 5.71736 5.89024 6.16839 6.21574 6.37299 6.43489 6.47812 6.58555 6.59982 6.71081 6.75862 6.87637 7.01887 7.11332 7.26247 7.41658 7.84465 7.88445 8.00923 8.16004 8.42155 9.05781 9.53117 9.61181 11.09878 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.014165 C = 0.011039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.952326 B = 1976.170944 C = 2535.866018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.075 3.925 3 Si 0.871 3.129 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.061 3.939 10 H 0.068 0.932 11 C -0.087 4.087 12 C -0.144 4.144 13 C -0.149 4.149 14 C -0.119 4.119 15 C -0.109 4.109 16 H 0.068 0.932 17 C -0.115 4.115 18 C 0.118 3.882 19 N -0.733 5.733 20 C 0.554 3.446 21 O -0.550 6.550 22 H 0.261 0.739 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -5.688 -1.882 8.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.129 4.129 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.042 3.958 10 H 0.086 0.914 11 C -0.105 4.105 12 C -0.181 4.181 13 C -0.186 4.186 14 C -0.157 4.157 15 C -0.131 4.131 16 H 0.086 0.914 17 C -0.152 4.152 18 C -0.007 4.007 19 N -0.387 5.387 20 C 0.342 3.658 21 O -0.427 6.427 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.610 -5.633 -1.765 8.144 hybrid contribution 0.500 1.486 -0.290 1.595 sum 6.110 -4.147 -2.055 7.665 Atomic orbital electron populations 1.69933 1.05595 1.26893 1.48086 1.24901 0.94544 0.98540 0.94866 0.87014 0.79904 0.84648 0.78523 1.20257 1.21605 1.20360 1.20860 0.93178 0.90270 1.50828 0.92841 1.18745 0.99083 0.92058 0.85926 0.91418 1.22545 0.98412 0.93999 0.95566 1.23003 1.00906 0.98798 0.95440 1.22868 1.00260 0.98130 0.97373 1.22750 1.01607 0.93731 0.97584 1.22204 0.93681 0.96802 1.00427 0.91409 1.22412 0.98485 0.94910 0.99440 1.21893 0.82681 0.97831 0.98288 1.45964 1.07849 1.36247 1.48634 1.20573 0.86141 0.81744 0.77378 1.90598 1.13803 1.73424 1.64900 0.92875 0.91093 0.92975 0.90613 0.92770 0.91394 0.90320 0.92767 0.89798 0.92956 0.93431 0.90274 0.77164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 12.45 55.43 0.69 -24.16 16 2 C 0.08 1.98 4.99 -17.82 -0.09 1.89 16 3 Si 0.87 20.46 29.37 -169.99 -4.99 15.46 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -12.58 4.76 -34.44 -0.16 -12.75 16 8 H 0.05 1.29 7.63 -52.48 -0.40 0.89 16 9 C 0.06 1.40 1.44 -91.77 -0.13 1.26 16 10 H 0.07 1.86 7.13 -51.93 -0.37 1.49 16 11 C -0.09 -1.67 2.77 -89.71 -0.25 -1.92 16 12 C -0.14 -2.45 6.83 -25.92 -0.18 -2.63 16 13 C -0.15 -2.34 8.08 -25.92 -0.21 -2.55 16 14 C -0.12 -2.22 7.57 -25.82 -0.20 -2.42 16 15 C -0.11 -2.31 2.81 -90.63 -0.25 -2.56 16 16 H 0.07 1.38 7.46 -51.92 -0.39 0.99 16 17 C -0.11 -1.99 6.15 -25.10 -0.15 -2.15 16 18 C 0.12 2.09 6.96 -3.12 -0.02 2.07 16 19 N -0.73 -14.94 6.23 -59.20 -0.37 -15.31 16 20 C 0.55 13.18 6.63 -10.86 -0.07 13.11 16 21 O -0.55 -15.29 18.03 5.56 0.10 -15.19 16 22 H 0.26 7.40 8.32 -40.82 -0.34 7.06 16 23 H 0.07 1.31 7.12 -51.93 -0.37 0.94 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.62 8.04 -51.93 -0.42 1.20 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.42 6.39 -51.93 -0.33 1.09 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.55 6.54 -51.93 -0.34 1.21 16 34 H 0.39 7.36 8.96 -40.82 -0.37 6.99 16 LS Contribution 270.92 15.07 4.08 4.08 Total: -1.00 -29.79 270.92 -7.28 -37.07 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.07 Total: 6.68 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.72 Total: -8.63 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.32 Total: -39.47 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.10 Total: -15.19 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.99 Total: 15.46 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.79 -7.28 -37.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.122 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds