Wall clock time and date at job start Mon Mar 30 2020 02:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00150 * 2 1 4 4 H 1.48500 * 109.47186 * 240.00137 * 3 2 1 5 5 H 1.48498 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47244 * 120.00301 * 3 2 1 7 7 C 1.37875 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00141 * 187.50704 * 7 2 1 9 9 C 1.50705 * 119.99999 * 7.51489 * 7 2 1 10 10 H 1.08995 * 109.46912 * 335.43912 * 9 7 2 11 11 C 1.53008 * 109.46713 * 215.44268 * 9 7 2 12 12 C 1.53781 * 113.61191 * 174.81318 * 11 9 7 13 13 C 1.53778 * 87.08387 * 220.01915 * 12 11 9 14 14 C 1.53785 * 87.17112 * 25.39177 * 13 12 11 15 15 C 1.52996 * 109.47310 * 95.44170 * 9 7 2 16 16 H 1.09008 * 110.43286 * 172.41945 * 15 9 7 17 17 C 1.54628 * 110.48563 * 49.73851 * 15 9 7 18 18 C 1.54486 * 101.76147 * 266.11710 * 17 15 9 19 19 N 1.46767 * 105.47405 * 334.58376 * 18 17 15 20 20 C 1.34418 * 111.30029 * 17.02041 * 19 18 17 21 21 O 1.21281 * 124.94309 * 179.62799 * 20 19 18 22 22 H 0.97004 * 119.99638 * 4.94576 * 1 2 3 23 23 H 1.08991 * 112.85063 * 306.00665 * 11 9 7 24 24 H 1.08997 * 113.61122 * 105.46618 * 12 11 9 25 25 H 1.09006 * 113.61642 * 334.56816 * 12 11 9 26 26 H 1.08996 * 113.61654 * 139.98459 * 13 12 11 27 27 H 1.09001 * 113.61343 * 270.80640 * 13 12 11 28 28 H 1.08992 * 113.61568 * 89.15808 * 14 13 12 29 29 H 1.09005 * 113.61443 * 220.06740 * 14 13 12 30 30 H 1.08996 * 110.97117 * 24.23867 * 17 15 9 31 31 H 1.09000 * 110.96571 * 148.00297 * 17 15 9 32 32 H 1.08997 * 110.24205 * 215.58780 * 18 17 15 33 33 H 1.08999 * 110.24445 * 93.59103 * 18 17 15 34 34 H 0.96998 * 124.34579 * 196.99517 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0776 -1.1982 0.1217 9 6 1.2607 -2.4935 -0.1718 10 1 0.2270 -2.3655 0.1495 11 6 1.9277 -3.5785 0.6762 12 6 1.1698 -4.9166 0.6716 13 6 1.4993 -5.0184 2.1702 14 6 1.5932 -3.4834 2.1760 15 6 1.2895 -2.9074 -1.6444 16 1 0.8741 -3.9078 -1.7667 17 6 2.7330 -2.8468 -2.1954 18 6 2.7772 -1.4289 -2.8073 19 7 1.3846 -1.0996 -3.1333 20 6 0.5275 -1.9106 -2.4896 21 8 -0.6809 -1.8523 -2.5746 22 1 -0.4850 0.8370 -0.0724 23 1 2.9935 -3.6796 0.4721 24 1 1.6476 -5.6868 0.0661 25 1 0.1045 -4.8144 0.4646 26 1 0.6784 -5.4079 2.7722 27 1 2.4477 -5.5146 2.3760 28 1 0.6439 -2.9887 2.3811 29 1 2.4123 -3.0984 2.7833 30 1 3.4620 -2.9476 -1.3914 31 1 2.8907 -3.6069 -2.9606 32 1 3.3867 -1.4270 -3.7109 33 1 3.1734 -0.7176 -2.0826 34 1 1.1172 -0.3878 -3.7356 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260602037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:07 Heat of formation + Delta-G solvation = -48.024655 kcal Electronic energy + Delta-G solvation = -16387.964353 eV Core-core repulsion = 13898.935598 eV Total energy + Delta-G solvation = -2489.028755 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.19210 -39.28232 -37.01947 -34.86916 -32.89082 -29.59511 -27.84949 -26.27046 -25.97219 -23.16629 -22.10208 -20.58763 -19.74199 -18.24401 -17.89108 -16.85831 -16.53115 -15.89695 -15.66354 -15.13464 -14.49259 -14.10977 -13.94530 -13.77010 -13.27450 -13.13111 -12.92991 -12.85357 -12.57127 -12.39304 -12.06274 -11.95826 -11.33554 -11.18082 -11.03598 -10.86136 -10.48827 -10.34100 -10.09422 -9.63097 -7.99202 -6.04403 1.39720 1.42895 1.47534 2.13305 2.47991 2.92482 3.31607 3.94225 4.03644 4.05547 4.13383 4.22259 4.29508 4.46178 4.73445 4.93606 4.95556 5.02880 5.04881 5.11249 5.18055 5.23468 5.27368 5.33658 5.53313 5.59721 5.69498 5.71889 5.87485 6.10782 6.32326 6.44319 6.49227 7.08602 7.59143 7.75338 9.07165 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.014165 C = 0.011039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.952326 B = 1976.170944 C = 2535.866018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.028 3.972 3 Si 0.919 3.081 4 H -0.256 1.256 5 H -0.308 1.308 6 H -0.273 1.273 7 C -0.494 4.494 8 H 0.065 0.935 9 C 0.062 3.938 10 H 0.009 0.991 11 C -0.089 4.089 12 C -0.139 4.139 13 C -0.128 4.128 14 C -0.131 4.131 15 C -0.111 4.111 16 H 0.073 0.927 17 C -0.103 4.103 18 C 0.112 3.888 19 N -0.727 5.727 20 C 0.538 3.462 21 O -0.605 6.605 22 H 0.248 0.752 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.623 -7.161 -2.412 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.171 4.171 3 Si 0.746 3.254 4 H -0.180 1.180 5 H -0.235 1.235 6 H -0.198 1.198 7 C -0.532 4.532 8 H 0.083 0.917 9 C 0.043 3.957 10 H 0.028 0.972 11 C -0.107 4.107 12 C -0.177 4.177 13 C -0.165 4.165 14 C -0.168 4.168 15 C -0.133 4.133 16 H 0.092 0.908 17 C -0.140 4.140 18 C -0.012 4.012 19 N -0.379 5.379 20 C 0.327 3.673 21 O -0.487 6.487 22 H 0.057 0.943 23 H 0.110 0.890 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.924 -7.105 -2.308 11.638 hybrid contribution -0.491 1.934 -0.114 1.999 sum 8.433 -5.171 -2.421 10.184 Atomic orbital electron populations 1.70146 1.07401 1.26465 1.51241 1.25505 0.94747 1.01441 0.95429 0.86227 0.78676 0.81058 0.79417 1.18040 1.23533 1.19833 1.21177 0.93506 0.90635 1.47922 0.91676 1.18608 0.95993 0.93189 0.87899 0.97232 1.22547 0.99346 0.93977 0.94866 1.22915 0.99521 0.98098 0.97151 1.22799 1.02056 0.95436 0.96255 1.22740 1.00052 0.96400 0.97625 1.22151 0.96362 0.96217 0.98600 0.90847 1.22454 0.95379 0.95648 1.00566 1.22126 0.81300 0.97578 1.00175 1.46051 1.08792 1.35477 1.47569 1.21169 0.85821 0.82768 0.77572 1.90552 1.16286 1.75093 1.66750 0.94264 0.88957 0.90250 0.92848 0.91869 0.88455 0.93790 0.92202 0.88672 0.89396 0.88741 0.91916 0.76556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.65 12.45 21.45 0.27 -54.39 16 2 C 0.03 1.47 4.99 84.65 0.42 1.90 16 3 Si 0.92 41.94 29.37 68.60 2.01 43.95 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.31 -14.91 7.11 99.48 0.71 -14.21 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.49 -23.91 4.76 25.60 0.12 -23.79 16 8 H 0.07 2.97 7.63 -2.91 -0.02 2.95 16 9 C 0.06 2.87 1.44 -11.54 -0.02 2.85 16 10 H 0.01 0.54 7.13 -2.39 -0.02 0.52 16 11 C -0.09 -3.26 2.77 -10.20 -0.03 -3.29 16 12 C -0.14 -4.44 6.83 31.12 0.21 -4.23 16 13 C -0.13 -3.66 8.08 31.12 0.25 -3.41 16 14 C -0.13 -4.77 7.57 31.18 0.24 -4.53 16 15 C -0.11 -4.58 2.81 -10.80 -0.03 -4.62 16 16 H 0.07 2.91 7.46 -2.38 -0.02 2.89 16 17 C -0.10 -3.16 6.15 31.65 0.19 -2.96 16 18 C 0.11 3.56 6.96 86.83 0.60 4.17 16 19 N -0.73 -28.71 6.23 -459.79 -2.86 -31.57 16 20 C 0.54 25.78 6.63 87.90 0.58 26.36 16 21 O -0.61 -35.05 18.03 -3.03 -0.05 -35.11 16 22 H 0.25 14.89 8.32 -92.71 -0.77 14.12 16 23 H 0.09 3.02 7.12 -2.39 -0.02 3.01 16 24 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.05 1.93 8.10 -2.38 -0.02 1.91 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.04 1.88 8.04 -2.39 -0.02 1.86 16 29 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.09 2.74 6.39 -2.39 -0.02 2.73 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.24 6.54 -2.39 -0.02 2.23 16 34 H 0.40 14.60 8.96 -92.71 -0.83 13.77 16 Total: -1.00 -68.10 270.92 2.17 -65.93 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.26 Total: 22.73 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 2.55 Total: -11.55 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.60 Total: -85.96 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.05 Total: -35.11 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.01 Total: 43.95 kcal Total: -68.10 2.17 -65.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.907 kcal (2) G-P(sol) polarization free energy of solvation -68.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds