Wall clock time and date at job start Mon Mar 30 2020 03:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.34485 * 126.16685 * 2 1 4 4 C 1.30258 * 108.70349 * 179.73948 * 3 2 1 5 5 C 1.50693 * 125.61806 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47099 * 90.02504 * 5 4 3 7 7 H 1.08002 * 120.00106 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99960 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99706 * 180.02562 * 8 6 5 10 10 Si 1.86792 * 119.99965 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47132 * 89.99869 * 10 8 6 12 12 H 1.48501 * 109.47000 * 209.99731 * 10 8 6 13 13 H 1.48497 * 109.47308 * 329.99925 * 10 8 6 14 14 O 1.33971 * 108.75981 * 0.02562 * 4 3 2 15 15 C 1.34334 * 126.17109 * 179.69236 * 2 1 3 16 16 C 1.50703 * 126.43831 * 0.23940 * 15 2 1 17 17 C 1.53002 * 109.46962 * 89.99676 * 16 15 2 18 18 C 1.53003 * 109.47165 * 174.99964 * 17 16 15 19 19 C 1.52997 * 109.47475 * 294.99972 * 17 16 15 20 20 H 1.08997 * 109.47722 * 90.02277 * 1 2 3 21 21 H 1.09002 * 109.47017 * 210.02303 * 1 2 3 22 22 H 1.09000 * 109.47384 * 330.02178 * 1 2 3 23 23 H 1.09004 * 109.47057 * 210.02501 * 5 4 3 24 24 H 1.09001 * 109.47192 * 330.02360 * 5 4 3 25 25 H 0.96995 * 119.99847 * 180.02562 * 9 8 6 26 26 H 1.09000 * 109.47084 * 209.99993 * 16 15 2 27 27 H 1.09000 * 109.47303 * 330.00286 * 16 15 2 28 28 H 1.08998 * 109.46872 * 55.00297 * 17 16 15 29 29 H 1.09003 * 109.46862 * 59.99906 * 18 17 16 30 30 H 1.08993 * 109.47582 * 180.02562 * 18 17 16 31 31 H 1.09005 * 109.47141 * 300.00460 * 18 17 16 32 32 H 1.08998 * 109.47336 * 300.00041 * 19 17 16 33 33 H 1.09000 * 109.46892 * 60.00012 * 19 17 16 34 34 H 1.09003 * 109.46924 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 0.0056 5 6 4.7479 1.6000 0.0071 6 6 5.1448 1.9056 1.4283 7 1 4.5808 1.4867 2.2486 8 6 6.2281 2.7202 1.6816 9 7 6.5748 2.9865 2.9220 10 14 7.2032 3.4454 0.2630 11 1 6.6209 4.7572 -0.1184 12 1 8.6164 3.6332 0.6786 13 1 7.1474 2.5225 -0.8990 14 8 3.5734 -0.6446 0.0087 15 6 2.2997 -1.0844 0.0058 16 6 1.8493 -2.5225 0.0085 17 6 1.7017 -3.0134 -1.4331 18 6 1.3659 -4.5061 -1.4318 19 6 0.5774 -2.2384 -2.1232 20 1 -0.3634 -0.0004 -1.0276 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5135 23 1 5.5746 1.1053 -0.5027 24 1 4.5054 2.5283 -0.5102 25 1 7.3366 3.5598 3.1002 26 1 2.5883 -3.1338 0.5266 27 1 0.8897 -2.6018 0.5193 28 1 2.6367 -2.8518 -1.9695 29 1 0.4309 -4.6677 -0.8954 30 1 1.2612 -4.8559 -2.4588 31 1 2.1669 -5.0583 -0.9402 32 1 -0.3576 -2.4000 -1.5869 33 1 0.8166 -1.1750 -2.1242 34 1 0.4726 -2.5878 -3.1504 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260615794.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:28 Heat of formation + Delta-G solvation = -9.495404 kcal Electronic energy + Delta-G solvation = -15210.280406 eV Core-core repulsion = 12722.922404 eV Total energy + Delta-G solvation = -2487.358001 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.62506 -36.71576 -34.41657 -33.46091 -31.64298 -29.45019 -28.56143 -27.11705 -24.98079 -22.80102 -20.81641 -20.47915 -19.50157 -17.06624 -16.03431 -15.82883 -15.28298 -14.48806 -14.16383 -13.87942 -13.57346 -12.95097 -12.81151 -12.70765 -12.25670 -12.18581 -12.12584 -11.94667 -11.49049 -11.19995 -10.93717 -10.83756 -10.73376 -10.64025 -10.31117 -9.98364 -9.68004 -9.52211 -8.67552 -7.78190 -6.16025 -4.18000 2.14806 3.24725 3.31700 3.33192 3.39811 3.45439 4.33224 4.74494 4.81679 4.85262 4.91405 5.16013 5.26341 5.34645 5.46305 5.53954 5.59436 5.71077 5.75039 5.83546 5.86086 5.94042 5.99580 6.08539 6.24690 6.26496 6.59615 6.65908 6.73048 6.91984 7.09915 7.46852 8.34999 8.60293 8.85414 9.39601 10.96632 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.043810 B = 0.006261 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.963070 B = 4471.294001 C = 4635.075407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.013 4.013 3 N -0.502 5.502 4 C 0.254 3.746 5 C 0.073 3.927 6 C -0.522 4.522 7 H 0.076 0.924 8 C 0.076 3.924 9 N -0.892 5.892 10 Si 0.878 3.122 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.263 1.263 14 O -0.202 6.202 15 C -0.082 4.082 16 C -0.021 4.021 17 C -0.094 4.094 18 C -0.146 4.146 19 C -0.152 4.152 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.268 0.732 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.439 -11.604 -9.126 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.132 4.132 3 N -0.231 5.231 4 C 0.048 3.952 5 C 0.035 3.965 6 C -0.560 4.560 7 H 0.094 0.906 8 C -0.127 4.127 9 N -0.530 5.530 10 Si 0.704 3.296 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.188 1.188 14 O -0.090 6.090 15 C -0.135 4.135 16 C -0.059 4.059 17 C -0.113 4.113 18 C -0.203 4.203 19 C -0.209 4.209 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.466 -10.898 -9.011 17.593 hybrid contribution 0.826 -0.191 -0.457 0.964 sum -9.640 -11.089 -9.468 17.480 Atomic orbital electron populations 1.20122 0.87622 1.02551 1.02072 1.21395 0.97359 0.88320 1.06175 1.70414 1.00814 1.30552 1.21342 1.26948 0.95794 0.78193 0.94259 1.18407 0.86203 0.91438 1.00450 1.20718 1.14372 1.31404 0.89535 0.90619 1.24886 0.96557 0.95433 0.95834 1.69877 1.27472 1.36919 1.18706 0.86803 0.79666 0.80281 0.82834 1.19689 1.20835 1.18771 1.84407 1.29441 1.25005 1.70131 1.22795 0.81686 0.97271 1.11726 1.20023 1.01387 0.87110 0.97383 1.21141 0.99771 0.95103 0.95273 1.21833 1.01571 0.95107 1.01776 1.22006 0.98002 1.01029 0.99853 0.91187 0.91464 0.91096 0.93496 0.92361 0.92251 0.90354 0.89308 0.90970 0.92548 0.92563 0.92563 0.92512 0.91900 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 9.15 36.00 0.33 -0.59 16 2 C -0.01 -0.24 6.17 -82.81 -0.51 -0.75 16 3 N -0.50 -11.60 11.29 -7.36 -0.08 -11.68 16 4 C 0.25 6.07 7.53 -12.95 -0.10 5.97 16 5 C 0.07 1.82 4.67 -29.04 -0.14 1.68 16 6 C -0.52 -15.16 9.65 -34.44 -0.33 -15.50 16 7 H 0.08 2.44 7.98 -52.49 -0.42 2.02 16 8 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 9 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 10 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 14 O -0.20 -4.46 10.78 5.37 0.06 -4.40 16 15 C -0.08 -1.49 6.10 -35.68 -0.22 -1.70 16 16 C -0.02 -0.28 5.03 -27.88 -0.14 -0.42 16 17 C -0.09 -1.05 2.91 -90.62 -0.26 -1.31 16 18 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 19 C -0.15 -1.59 7.90 37.16 0.29 -1.30 16 20 H 0.07 0.84 6.82 -51.93 -0.35 0.49 16 21 H 0.07 0.75 7.16 -51.93 -0.37 0.38 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.05 1.11 7.20 -51.93 -0.37 0.73 16 24 H 0.06 1.40 7.57 -51.93 -0.39 1.01 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.09 0.97 7.16 -51.93 -0.37 0.60 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.79 5.31 -51.93 -0.28 0.52 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 280.67 15.07 4.23 4.23 Total: -1.00 -32.09 280.67 -5.63 -37.72 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -5.11 Total: -2.92 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.83 Total: -12.74 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.69 Total: -38.14 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: 0.06 Total: -4.40 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.09 -5.63 -37.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260615794.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.228 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds