Wall clock time and date at job start Mon Mar 30 2020 03:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.34485 * 126.16685 * 2 1 4 4 C 1.30258 * 108.70349 * 179.73948 * 3 2 1 5 5 C 1.50693 * 125.61806 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47099 * 90.02504 * 5 4 3 7 7 H 1.08002 * 120.00106 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99960 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99706 * 180.02562 * 8 6 5 10 10 Si 1.86792 * 119.99965 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47132 * 89.99869 * 10 8 6 12 12 H 1.48501 * 109.47000 * 209.99731 * 10 8 6 13 13 H 1.48497 * 109.47308 * 329.99925 * 10 8 6 14 14 O 1.33971 * 108.75981 * 0.02562 * 4 3 2 15 15 C 1.34334 * 126.17109 * 179.69236 * 2 1 3 16 16 C 1.50703 * 126.43831 * 0.23940 * 15 2 1 17 17 C 1.53002 * 109.46962 * 89.99676 * 16 15 2 18 18 C 1.53003 * 109.47165 * 174.99964 * 17 16 15 19 19 C 1.52997 * 109.47475 * 294.99972 * 17 16 15 20 20 H 1.08997 * 109.47722 * 90.02277 * 1 2 3 21 21 H 1.09002 * 109.47017 * 210.02303 * 1 2 3 22 22 H 1.09000 * 109.47384 * 330.02178 * 1 2 3 23 23 H 1.09004 * 109.47057 * 210.02501 * 5 4 3 24 24 H 1.09001 * 109.47192 * 330.02360 * 5 4 3 25 25 H 0.96995 * 119.99847 * 180.02562 * 9 8 6 26 26 H 1.09000 * 109.47084 * 209.99993 * 16 15 2 27 27 H 1.09000 * 109.47303 * 330.00286 * 16 15 2 28 28 H 1.08998 * 109.46872 * 55.00297 * 17 16 15 29 29 H 1.09003 * 109.46862 * 59.99906 * 18 17 16 30 30 H 1.08993 * 109.47582 * 180.02562 * 18 17 16 31 31 H 1.09005 * 109.47141 * 300.00460 * 18 17 16 32 32 H 1.08998 * 109.47336 * 300.00041 * 19 17 16 33 33 H 1.09000 * 109.46892 * 60.00012 * 19 17 16 34 34 H 1.09003 * 109.46924 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 0.0056 5 6 4.7479 1.6000 0.0071 6 6 5.1448 1.9056 1.4283 7 1 4.5808 1.4867 2.2486 8 6 6.2281 2.7202 1.6816 9 7 6.5748 2.9865 2.9220 10 14 7.2032 3.4454 0.2630 11 1 6.6209 4.7572 -0.1184 12 1 8.6164 3.6332 0.6786 13 1 7.1474 2.5225 -0.8990 14 8 3.5734 -0.6446 0.0087 15 6 2.2997 -1.0844 0.0058 16 6 1.8493 -2.5225 0.0085 17 6 1.7017 -3.0134 -1.4331 18 6 1.3659 -4.5061 -1.4318 19 6 0.5774 -2.2384 -2.1232 20 1 -0.3634 -0.0004 -1.0276 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5135 23 1 5.5746 1.1053 -0.5027 24 1 4.5054 2.5283 -0.5102 25 1 7.3366 3.5598 3.1002 26 1 2.5883 -3.1338 0.5266 27 1 0.8897 -2.6018 0.5193 28 1 2.6367 -2.8518 -1.9695 29 1 0.4309 -4.6677 -0.8954 30 1 1.2612 -4.8559 -2.4588 31 1 2.1669 -5.0583 -0.9402 32 1 -0.3576 -2.4000 -1.5869 33 1 0.8166 -1.1750 -2.1242 34 1 0.4726 -2.5878 -3.1504 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260615794.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:28 Heat of formation + Delta-G solvation = -32.047374 kcal Electronic energy + Delta-G solvation = -15211.258332 eV Core-core repulsion = 12722.922404 eV Total energy + Delta-G solvation = -2488.335928 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.23901 -37.70269 -36.03478 -35.48012 -33.36354 -31.17352 -29.67842 -27.87212 -26.61853 -24.53342 -22.49266 -21.75051 -20.77911 -19.21868 -17.61933 -17.42893 -16.41775 -16.31714 -15.42470 -15.14590 -15.00638 -14.43312 -14.04202 -13.97685 -13.84092 -13.60529 -13.10324 -12.95761 -12.87223 -12.65675 -12.49671 -12.09254 -11.98904 -11.82353 -11.78102 -11.64905 -11.56666 -11.28904 -10.86930 -9.30334 -8.38300 -6.48632 0.57931 1.37698 1.39980 1.51106 1.76805 1.89671 2.31092 2.95039 3.29002 3.75392 3.90137 3.98779 4.00614 4.26250 4.45702 4.62372 4.68454 4.69949 4.74587 4.83884 4.87440 4.89228 4.98290 5.04431 5.06686 5.18842 5.24193 5.28779 5.35276 5.47499 5.48036 5.56693 6.08591 6.52785 6.95070 7.13981 8.78519 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.043810 B = 0.006261 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.963070 B = 4471.294001 C = 4635.075407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.032 4.032 3 N -0.523 5.523 4 C 0.215 3.785 5 C 0.081 3.919 6 C -0.538 4.538 7 H 0.021 0.979 8 C 0.017 3.983 9 N -0.942 5.942 10 Si 0.957 3.043 11 H -0.260 1.260 12 H -0.275 1.275 13 H -0.239 1.239 14 O -0.219 6.219 15 C -0.073 4.073 16 C -0.022 4.022 17 C -0.091 4.091 18 C -0.140 4.140 19 C -0.150 4.150 20 H 0.091 0.909 21 H 0.099 0.901 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.274 0.726 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.542 -12.870 -11.074 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.152 4.152 3 N -0.253 5.253 4 C 0.009 3.991 5 C 0.043 3.957 6 C -0.576 4.576 7 H 0.039 0.961 8 C -0.182 4.182 9 N -0.580 5.580 10 Si 0.777 3.223 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.162 1.162 14 O -0.107 6.107 15 C -0.125 4.125 16 C -0.060 4.060 17 C -0.110 4.110 18 C -0.197 4.197 19 C -0.207 4.207 20 H 0.109 0.891 21 H 0.117 0.883 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.137 0.863 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.585 -12.192 -10.964 20.076 hybrid contribution 1.044 0.098 0.240 1.076 sum -10.541 -12.093 -10.724 19.297 Atomic orbital electron populations 1.20302 0.83998 1.03822 1.03820 1.22180 0.99536 0.87244 1.06221 1.70351 1.01178 1.32747 1.21032 1.26637 0.95914 0.78974 0.97612 1.18184 0.87402 0.92424 0.97711 1.20848 1.14464 1.31813 0.90502 0.96098 1.25955 0.97521 0.95447 0.99232 1.70032 1.28465 1.37941 1.21603 0.85577 0.77648 0.79904 0.79135 1.18461 1.20024 1.16178 1.84375 1.31732 1.24379 1.70232 1.23885 0.80127 0.99607 1.08890 1.20382 1.02632 0.83652 0.99288 1.21114 0.99265 0.97093 0.93481 1.21790 1.02389 0.92727 1.02793 1.22000 0.98544 0.99259 1.00942 0.89092 0.88273 0.91726 0.92096 0.91450 0.91736 0.90056 0.86334 0.93096 0.90876 0.91562 0.92493 0.90351 0.94361 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 9.15 71.23 0.65 -0.93 16 2 C -0.03 -1.21 6.17 41.26 0.25 -0.95 16 3 N -0.52 -24.58 11.29 -291.98 -3.30 -27.88 16 4 C 0.21 10.54 7.53 88.34 0.67 11.21 16 5 C 0.08 4.09 4.67 29.10 0.14 4.23 16 6 C -0.54 -32.62 9.65 25.60 0.25 -32.37 16 7 H 0.02 1.43 7.98 -2.91 -0.02 1.41 16 8 C 0.02 1.00 5.47 84.66 0.46 1.46 16 9 N -0.94 -59.33 13.96 21.45 0.30 -59.03 16 10 Si 0.96 43.04 27.47 68.60 1.88 44.92 16 11 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 14 O -0.22 -9.89 10.78 -3.70 -0.04 -9.93 16 15 C -0.07 -2.60 6.10 24.79 0.15 -2.45 16 16 C -0.02 -0.53 5.03 29.85 0.15 -0.38 16 17 C -0.09 -1.79 2.91 -10.79 -0.03 -1.82 16 18 C -0.14 -1.92 9.19 71.98 0.66 -1.26 16 19 C -0.15 -2.70 7.90 71.98 0.57 -2.14 16 20 H 0.09 1.93 6.82 -2.39 -0.02 1.91 16 21 H 0.10 1.84 7.16 -2.39 -0.02 1.83 16 22 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.06 2.86 7.20 -2.39 -0.02 2.84 16 24 H 0.07 3.24 7.57 -2.39 -0.02 3.22 16 25 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.12 2.12 7.16 -2.39 -0.02 2.10 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.77 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 0.88 5.31 -2.39 -0.01 0.87 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -73.60 280.67 3.78 -69.82 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.02 Total: 7.50 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 3.92 Total: -25.40 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -3.00 Total: -86.91 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.04 Total: -9.93 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.92 kcal Total: -73.60 3.78 -69.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260615794.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.774 kcal (2) G-P(sol) polarization free energy of solvation -73.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds