Wall clock time and date at job start Mon Mar 30 2020 02:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00080 * 2 1 4 4 H 1.48497 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46805 * 300.00238 * 3 2 1 6 6 H 1.48504 * 109.46945 * 59.99838 * 3 2 1 7 7 C 1.37879 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99662 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47406 * 180.02562 * 9 7 2 11 11 N 1.28632 * 122.93614 * 0.02562 * 10 9 7 12 12 C 1.47606 * 108.54706 * 179.61652 * 11 10 9 13 13 C 1.54847 * 101.89390 * 345.04528 * 12 11 10 14 14 H 1.09000 * 111.08046 * 265.22620 * 13 12 11 15 15 C 1.52999 * 111.07623 * 141.21962 * 13 12 11 16 16 C 1.54257 * 110.03603 * 297.91379 * 15 13 12 17 17 C 1.54967 * 104.15929 * 217.13529 * 16 15 13 18 18 C 1.54889 * 102.78008 * 37.88545 * 17 16 15 19 19 C 1.53876 * 110.03122 * 180.69124 * 15 13 12 20 20 O 1.34591 * 122.94000 * 180.02562 * 10 9 7 21 21 H 0.97001 * 120.00421 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47302 * 59.99710 * 9 7 2 23 23 H 1.09001 * 109.46954 * 299.99852 * 9 7 2 24 24 H 1.09003 * 110.94588 * 103.20043 * 12 11 10 25 25 H 1.08992 * 110.94203 * 226.89521 * 12 11 10 26 26 H 1.09005 * 110.01233 * 59.30666 * 15 13 12 27 27 H 1.09002 * 110.48614 * 335.77946 * 16 15 13 28 28 H 1.08996 * 110.49452 * 98.42620 * 16 15 13 29 29 H 1.08996 * 110.71841 * 279.57045 * 17 16 15 30 30 H 1.08999 * 110.92780 * 156.29238 * 17 16 15 31 31 H 1.08997 * 110.49027 * 203.40414 * 18 17 16 32 32 H 1.09004 * 110.59713 * 80.81121 * 18 17 16 33 33 H 1.09001 * 110.03145 * 238.57374 * 19 15 13 34 34 H 1.08995 * 110.03409 * 359.95234 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2304 -3.6446 -0.0015 11 7 3.5055 -3.4747 0.0001 12 6 4.1558 -4.7997 0.0092 13 6 2.9814 -5.7288 0.4034 14 1 2.9685 -5.9100 1.4781 15 6 3.0375 -7.0461 -0.3729 16 6 2.8994 -6.7746 -1.8851 17 6 2.0502 -7.9612 -2.4072 18 6 1.0330 -8.1851 -1.2608 19 6 1.8517 -7.9428 0.0240 20 8 1.8475 -4.9349 -0.0028 21 1 -0.4851 0.8400 0.0004 22 1 0.6248 -2.5564 -0.8919 23 1 0.6242 -2.5575 0.8880 24 1 4.5381 -5.0530 -0.9797 25 1 4.9503 -4.8386 0.7542 26 1 3.9778 -7.5589 -0.1700 27 1 2.3823 -5.8307 -2.0576 28 1 3.8792 -6.7667 -2.3625 29 1 2.6708 -8.8455 -2.5512 30 1 1.5377 -7.6960 -3.3319 31 1 0.6515 -9.2059 -1.2833 32 1 0.2128 -7.4706 -1.3309 33 1 2.2164 -8.8911 0.4188 34 1 1.2367 -7.4399 0.7703 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260622541.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:29 Heat of formation + Delta-G solvation = -33.836506 kcal Electronic energy + Delta-G solvation = -15433.024544 eV Core-core repulsion = 12944.611033 eV Total energy + Delta-G solvation = -2488.413511 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.75837 -37.64181 -33.53084 -32.62136 -31.35849 -28.97351 -28.62577 -25.93919 -23.40293 -22.48436 -20.63169 -19.94245 -18.92886 -16.24828 -16.11772 -15.87711 -15.50391 -15.03486 -14.23910 -13.73138 -13.32391 -12.99600 -12.70429 -12.31600 -12.15535 -11.61482 -11.40214 -11.08986 -11.00013 -10.85353 -10.77148 -10.70172 -10.58438 -10.51180 -10.39753 -9.88223 -9.46920 -8.90026 -8.50675 -8.18509 -6.02928 -4.02486 3.09761 3.35665 3.42596 3.50457 3.89789 4.50036 4.51407 4.67679 4.72291 4.94184 5.18636 5.25822 5.35544 5.43719 5.49540 5.60027 5.66633 5.73569 5.75753 5.88642 5.94166 5.95536 6.07236 6.11589 6.27537 6.34086 6.44933 6.67994 7.21434 7.34479 7.38506 8.01906 8.20347 8.79000 9.10522 9.61502 11.09515 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.049559 B = 0.006234 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.844752 B = 4490.513815 C = 4706.414541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.082 0.918 9 C 0.083 3.917 10 C 0.322 3.678 11 N -0.541 5.541 12 C -0.010 4.010 13 C 0.049 3.951 14 H 0.082 0.918 15 C -0.084 4.084 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.118 4.118 20 O -0.346 6.346 21 H 0.261 0.739 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 -15.519 -1.423 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.100 0.900 9 C 0.046 3.954 10 C 0.098 3.902 11 N -0.276 5.276 12 C -0.139 4.139 13 C -0.009 4.009 14 H 0.100 0.900 15 C -0.102 4.102 16 C -0.158 4.158 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.155 4.155 20 O -0.250 6.250 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.511 -14.909 -1.475 15.646 hybrid contribution 0.216 0.106 0.134 0.276 sum 4.727 -14.803 -1.341 15.597 Atomic orbital electron populations 1.69972 1.06062 1.26842 1.51200 1.25012 0.94888 0.99475 0.95324 0.86359 0.80271 0.82988 0.77397 1.19464 1.21079 1.21103 1.21234 0.94563 0.88652 1.50017 0.89988 1.18188 0.91374 0.86196 0.99637 1.26922 0.93415 0.84097 0.85764 1.74973 1.05814 1.20061 1.26759 1.24117 0.98174 0.89654 1.01985 1.24070 0.85779 0.92487 0.98570 0.90037 1.21846 0.99239 0.93494 0.95668 1.22419 0.99890 0.99665 0.93867 1.22465 0.97473 0.97893 0.98135 1.22319 0.98262 1.00956 0.94412 1.22153 0.96418 0.98648 0.98305 1.86979 1.38191 1.17630 1.82230 0.92918 0.93089 0.93083 0.90241 0.89756 0.89752 0.90344 0.91978 0.91960 0.91673 0.92151 0.91172 0.92133 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.44 8.95 -34.44 -0.31 -14.75 16 8 H 0.08 2.39 6.77 -52.48 -0.36 2.03 16 9 C 0.08 2.18 5.60 -29.04 -0.16 2.02 16 10 C 0.32 7.42 7.68 -13.62 -0.10 7.32 16 11 N -0.54 -12.30 10.20 -56.98 -0.58 -12.88 16 12 C -0.01 -0.17 7.53 -2.46 -0.02 -0.18 16 13 C 0.05 0.78 3.23 -25.76 -0.08 0.70 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 15 C -0.08 -1.06 2.90 -89.51 -0.26 -1.32 16 16 C -0.12 -1.58 5.19 -25.03 -0.13 -1.71 16 17 C -0.12 -1.36 6.91 -24.70 -0.17 -1.53 16 18 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 19 C -0.12 -1.38 6.36 -25.61 -0.16 -1.54 16 20 O -0.35 -6.89 9.52 -15.55 -0.15 -7.04 16 21 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 22 H 0.05 1.38 8.14 -51.93 -0.42 0.95 16 23 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 24 H 0.08 1.28 6.98 -51.93 -0.36 0.92 16 25 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.27 6.89 -51.93 -0.36 0.92 16 28 H 0.06 0.74 8.03 -51.93 -0.42 0.32 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.90 7.66 -51.93 -0.40 0.50 16 LS Contribution 276.57 15.07 4.17 4.17 Total: -1.00 -30.06 276.57 -7.77 -37.83 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.25 Total: -2.09 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -1.67 Total: -11.13 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.15 Total: -38.72 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.15 Total: -7.04 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.06 -7.77 -37.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622541.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.990 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds