Wall clock time and date at job start Mon Mar 30 2020 02:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00080 * 2 1 4 4 H 1.48497 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46805 * 300.00238 * 3 2 1 6 6 H 1.48504 * 109.46945 * 59.99838 * 3 2 1 7 7 C 1.37879 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99662 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47406 * 180.02562 * 9 7 2 11 11 N 1.28632 * 122.93614 * 0.02562 * 10 9 7 12 12 C 1.47606 * 108.54706 * 179.61652 * 11 10 9 13 13 C 1.54847 * 101.89390 * 345.04528 * 12 11 10 14 14 H 1.09000 * 111.08046 * 265.22620 * 13 12 11 15 15 C 1.52999 * 111.07623 * 141.21962 * 13 12 11 16 16 C 1.54257 * 110.03603 * 297.91379 * 15 13 12 17 17 C 1.54967 * 104.15929 * 217.13529 * 16 15 13 18 18 C 1.54889 * 102.78008 * 37.88545 * 17 16 15 19 19 C 1.53876 * 110.03122 * 180.69124 * 15 13 12 20 20 O 1.34591 * 122.94000 * 180.02562 * 10 9 7 21 21 H 0.97001 * 120.00421 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47302 * 59.99710 * 9 7 2 23 23 H 1.09001 * 109.46954 * 299.99852 * 9 7 2 24 24 H 1.09003 * 110.94588 * 103.20043 * 12 11 10 25 25 H 1.08992 * 110.94203 * 226.89521 * 12 11 10 26 26 H 1.09005 * 110.01233 * 59.30666 * 15 13 12 27 27 H 1.09002 * 110.48614 * 335.77946 * 16 15 13 28 28 H 1.08996 * 110.49452 * 98.42620 * 16 15 13 29 29 H 1.08996 * 110.71841 * 279.57045 * 17 16 15 30 30 H 1.08999 * 110.92780 * 156.29238 * 17 16 15 31 31 H 1.08997 * 110.49027 * 203.40414 * 18 17 16 32 32 H 1.09004 * 110.59713 * 80.81121 * 18 17 16 33 33 H 1.09001 * 110.03145 * 238.57374 * 19 15 13 34 34 H 1.08995 * 110.03409 * 359.95234 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2304 -3.6446 -0.0015 11 7 3.5055 -3.4747 0.0001 12 6 4.1558 -4.7997 0.0092 13 6 2.9814 -5.7288 0.4034 14 1 2.9685 -5.9100 1.4781 15 6 3.0375 -7.0461 -0.3729 16 6 2.8994 -6.7746 -1.8851 17 6 2.0502 -7.9612 -2.4072 18 6 1.0330 -8.1851 -1.2608 19 6 1.8517 -7.9428 0.0240 20 8 1.8475 -4.9349 -0.0028 21 1 -0.4851 0.8400 0.0004 22 1 0.6248 -2.5564 -0.8919 23 1 0.6242 -2.5575 0.8880 24 1 4.5381 -5.0530 -0.9797 25 1 4.9503 -4.8386 0.7542 26 1 3.9778 -7.5589 -0.1700 27 1 2.3823 -5.8307 -2.0576 28 1 3.8792 -6.7667 -2.3625 29 1 2.6708 -8.8455 -2.5512 30 1 1.5377 -7.6960 -3.3319 31 1 0.6515 -9.2059 -1.2833 32 1 0.2128 -7.4706 -1.3309 33 1 2.2164 -8.8911 0.4188 34 1 1.2367 -7.4399 0.7703 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260622541.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:28 Heat of formation + Delta-G solvation = -54.229393 kcal Electronic energy + Delta-G solvation = -15433.908846 eV Core-core repulsion = 12944.611033 eV Total energy + Delta-G solvation = -2489.297813 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.25559 -38.70729 -35.55117 -34.31091 -32.89383 -30.61111 -29.62637 -27.42034 -25.43131 -23.80002 -21.60247 -21.39470 -20.25188 -18.34178 -17.54492 -17.37466 -16.65171 -16.47127 -16.13167 -15.04753 -14.58745 -14.28632 -14.21197 -13.99943 -13.61850 -13.44093 -12.99205 -12.68212 -12.61321 -12.05649 -11.99649 -11.95503 -11.86356 -11.74799 -11.56778 -11.48073 -11.34270 -10.66489 -10.62795 -9.87116 -8.22112 -6.29579 1.34035 1.43497 1.43799 1.58943 2.32860 2.54817 3.13665 3.34882 3.49508 3.68107 3.76919 3.94479 4.12635 4.32787 4.46459 4.52347 4.60530 4.68285 4.74819 4.78513 4.86964 4.95038 5.05897 5.08836 5.13989 5.23040 5.24487 5.29953 5.46001 5.49424 5.51861 5.80545 6.07700 6.83309 7.09741 7.38792 8.91208 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.049559 B = 0.006234 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.844752 B = 4490.513815 C = 4706.414541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.074 0.926 9 C 0.088 3.912 10 C 0.315 3.685 11 N -0.567 5.567 12 C -0.010 4.010 13 C 0.047 3.953 14 H 0.092 0.908 15 C -0.079 4.079 16 C -0.125 4.125 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.117 4.117 20 O -0.354 6.354 21 H 0.266 0.734 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.093 0.907 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.805 -16.883 -1.383 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.092 0.908 9 C 0.050 3.950 10 C 0.090 3.910 11 N -0.304 5.304 12 C -0.139 4.139 13 C -0.010 4.010 14 H 0.110 0.890 15 C -0.097 4.097 16 C -0.162 4.162 17 C -0.154 4.154 18 C -0.162 4.162 19 C -0.155 4.155 20 O -0.258 6.258 21 H 0.075 0.925 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.111 0.889 25 H 0.125 0.875 26 H 0.136 0.864 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.146 -16.296 -1.434 17.476 hybrid contribution -0.271 0.456 0.120 0.544 sum 5.875 -15.840 -1.314 16.946 Atomic orbital electron populations 1.70075 1.07497 1.28042 1.51620 1.25886 0.95785 1.03052 0.94656 0.85298 0.78769 0.78466 0.77892 1.19292 1.20143 1.20096 1.21428 0.94318 0.89958 1.50446 0.90806 1.17859 0.91697 0.87469 0.97960 1.26160 0.93036 0.84618 0.87139 1.74850 1.05893 1.23915 1.25722 1.24266 0.98740 0.87361 1.03544 1.24405 0.83600 0.93161 0.99837 0.88979 1.21955 1.01278 0.91848 0.94624 1.22411 1.00481 0.98635 0.94712 1.22466 0.97296 0.97908 0.97739 1.22338 0.97715 1.01559 0.94595 1.22173 0.95813 0.99539 0.97932 1.86956 1.40051 1.16610 1.82212 0.92479 0.95046 0.94795 0.88901 0.87538 0.86440 0.94328 0.90623 0.89412 0.91945 0.89938 0.93663 0.89255 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.52 -30.62 8.95 25.60 0.23 -30.39 16 8 H 0.07 4.37 6.77 -2.91 -0.02 4.35 16 9 C 0.09 4.81 5.60 29.10 0.16 4.97 16 10 C 0.32 14.94 7.68 88.58 0.68 15.62 16 11 N -0.57 -25.91 10.20 -449.44 -4.59 -30.50 16 12 C -0.01 -0.33 7.53 86.80 0.65 0.32 16 13 C 0.05 1.44 3.23 31.22 0.10 1.54 16 14 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 15 C -0.08 -1.78 2.90 -10.07 -0.03 -1.81 16 16 C -0.12 -3.06 5.19 31.69 0.16 -2.90 16 17 C -0.12 -2.34 6.91 31.91 0.22 -2.12 16 18 C -0.12 -2.62 6.83 31.67 0.22 -2.40 16 19 C -0.12 -2.45 6.36 31.32 0.20 -2.25 16 20 O -0.35 -14.38 9.52 -78.57 -0.75 -15.13 16 21 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 22 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.03 1.93 8.14 -2.39 -0.02 1.92 16 24 H 0.09 2.82 6.98 -2.39 -0.02 2.80 16 25 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 26 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.04 1.26 6.89 -2.39 -0.02 1.24 16 28 H 0.08 1.62 8.03 -2.39 -0.02 1.60 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.27 7.66 -2.39 -0.02 1.25 16 Total: -1.00 -65.74 276.57 1.10 -64.63 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.07 Total: 8.01 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 3.06 Total: -18.73 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -4.30 Total: -86.18 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.75 Total: -15.13 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -65.74 1.10 -64.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622541.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.404 kcal (2) G-P(sol) polarization free energy of solvation -65.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds