Wall clock time and date at job start Mon Mar 30 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99850 * 2 1 4 4 H 1.48506 * 109.46906 * 239.99813 * 3 2 1 5 5 H 1.48504 * 109.47075 * 120.00190 * 3 2 1 6 6 H 1.48499 * 109.47204 * 359.97438 * 3 2 1 7 7 C 1.37882 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47167 * 185.10287 * 9 7 2 11 11 H 1.09000 * 109.47123 * 53.72213 * 10 9 7 12 12 C 1.53001 * 109.47061 * 293.72010 * 10 9 7 13 13 C 1.53001 * 117.49806 * 4.60557 * 12 10 9 14 14 C 1.52991 * 60.00150 * 252.51280 * 13 12 10 15 15 C 1.53001 * 109.46973 * 173.72329 * 10 9 7 16 16 H 1.08994 * 110.43630 * 59.29479 * 15 10 9 17 17 C 1.54629 * 110.48508 * 181.84261 * 15 10 9 18 18 C 1.54473 * 101.76885 * 93.87862 * 17 15 10 19 19 N 1.46768 * 105.47561 * 25.41278 * 18 17 15 20 20 C 1.34743 * 111.34740 * 343.02115 * 19 18 17 21 21 O 1.21288 * 125.12098 * 180.36627 * 20 19 18 22 22 H 0.97007 * 119.99678 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47014 * 305.10102 * 9 7 2 24 24 H 1.08996 * 109.47011 * 65.09762 * 9 7 2 25 25 H 1.08995 * 115.54884 * 150.31397 * 12 10 9 26 26 H 1.09001 * 117.49978 * 0.02562 * 13 12 10 27 27 H 1.09000 * 117.49560 * 145.01612 * 13 12 10 28 28 H 1.08998 * 117.49820 * 252.51402 * 14 13 12 29 29 H 1.09002 * 117.50050 * 107.49325 * 14 13 12 30 30 H 1.09000 * 110.96636 * 211.99632 * 17 15 10 31 31 H 1.09003 * 110.96855 * 335.75686 * 17 15 10 32 32 H 1.09001 * 110.24731 * 144.41486 * 18 17 15 33 33 H 1.08999 * 110.24403 * 266.33169 * 18 17 15 34 34 H 0.96994 * 124.34988 * 162.97902 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2841 2.7465 -0.0006 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2404 -3.6592 0.1295 11 1 2.8727 -3.5021 1.0034 12 6 3.1128 -3.7274 -1.1256 13 6 2.9328 -2.6255 -2.1717 14 6 2.4180 -4.0385 -2.4528 15 6 1.4698 -4.9715 0.2868 16 1 0.8223 -5.1382 -0.5740 17 6 2.4481 -6.1555 0.4655 18 6 2.5355 -6.2626 2.0040 19 7 1.2791 -5.6957 2.5080 20 6 0.6596 -4.9599 1.5644 21 8 -0.3916 -4.3739 1.7150 22 1 -0.4850 -0.8401 0.0004 23 1 0.5574 -2.5182 0.8410 24 1 0.6951 -2.5977 -0.9317 25 1 4.1177 -4.1231 -0.9787 26 1 2.1933 -1.8517 -1.9656 27 1 3.8196 -2.2959 -2.7131 28 1 2.9660 -4.6386 -3.1791 29 1 1.3394 -4.1946 -2.4318 30 1 2.0385 -7.0686 0.0336 31 1 3.4224 -5.9249 0.0346 32 1 2.6258 -7.3064 2.3050 33 1 3.3850 -5.6889 2.3744 34 1 0.9376 -5.8333 3.4054 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624822.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:57 Heat of formation + Delta-G solvation = -24.624499 kcal Electronic energy + Delta-G solvation = -15972.857912 eV Core-core repulsion = 13484.843864 eV Total energy + Delta-G solvation = -2488.014048 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.25691 -37.49182 -35.89256 -33.07770 -31.87305 -29.25468 -26.95851 -24.55017 -22.61270 -21.51588 -21.44690 -19.91135 -18.25589 -17.08959 -16.46359 -16.00379 -15.36214 -14.43454 -13.77640 -13.65688 -13.44790 -13.07476 -12.97582 -12.55373 -12.07315 -11.83578 -11.43153 -11.03530 -10.75296 -10.55069 -10.47134 -10.11675 -10.04456 -9.70606 -9.35184 -9.13609 -9.03991 -8.85917 -8.35624 -8.18379 -6.21971 -3.88251 3.05038 3.48946 3.50954 3.63523 3.69719 4.56336 4.62986 4.67712 4.76999 5.01766 5.30643 5.48726 5.53012 5.58856 5.67430 5.75031 5.82532 5.88879 6.11890 6.16171 6.26587 6.29090 6.57980 6.74567 6.77251 7.02566 7.15083 7.26034 7.43858 7.64912 7.71441 8.35086 8.60255 8.67472 9.01609 9.79962 11.17986 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028589 B = 0.009762 C = 0.008276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.163613 B = 2867.623713 C = 3382.602637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.064 2.936 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.588 4.588 8 H 0.051 0.949 9 C 0.005 3.995 10 C -0.028 4.028 11 H 0.063 0.937 12 C -0.136 4.136 13 C -0.167 4.167 14 C -0.196 4.196 15 C -0.115 4.115 16 H 0.098 0.902 17 C -0.130 4.130 18 C 0.105 3.895 19 N -0.743 5.743 20 C 0.525 3.475 21 O -0.519 6.519 22 H 0.272 0.728 23 H 0.026 0.974 24 H 0.007 0.993 25 H 0.085 0.915 26 H 0.144 0.856 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.562 -12.982 0.430 15.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.893 3.107 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.627 4.627 8 H 0.069 0.931 9 C -0.032 4.032 10 C -0.047 4.047 11 H 0.082 0.918 12 C -0.154 4.154 13 C -0.203 4.203 14 C -0.233 4.233 15 C -0.137 4.137 16 H 0.116 0.884 17 C -0.168 4.168 18 C -0.020 4.020 19 N -0.400 5.400 20 C 0.311 3.689 21 O -0.394 6.394 22 H 0.083 0.917 23 H 0.044 0.956 24 H 0.025 0.975 25 H 0.103 0.897 26 H 0.161 0.839 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.840 -10.993 0.379 12.953 hybrid contribution 0.285 -1.897 0.472 1.975 sum 7.125 -12.890 0.851 14.752 Atomic orbital electron populations 1.70725 1.06903 1.30977 1.46247 1.25746 0.96576 1.02430 0.94425 0.83623 0.74910 0.75841 0.76370 1.21481 1.21696 1.20972 1.21953 0.94188 0.91652 1.54879 0.93120 1.19458 0.94322 0.92356 0.97044 1.20499 0.96242 0.92067 0.95859 0.91839 1.21991 0.98214 1.05172 0.90056 1.23620 1.03861 0.92947 0.99852 1.22890 1.00003 1.01364 0.99084 1.22116 0.97517 0.97538 0.96495 0.88396 1.22670 1.01361 0.98309 0.94421 1.21980 0.86621 0.98298 0.95063 1.46293 1.24326 1.53796 1.15561 1.21047 0.84577 0.76705 0.86551 1.90756 1.22527 1.43335 1.82743 0.91724 0.95602 0.97469 0.89719 0.83883 0.90964 0.90523 0.89574 0.90726 0.89044 0.91014 0.91409 0.75891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.76 13.65 55.43 0.76 -28.01 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 3 Si 1.06 25.69 29.90 -169.99 -5.08 20.61 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.59 -16.34 6.17 -34.44 -0.21 -16.55 16 8 H 0.05 1.38 7.23 -52.49 -0.38 1.00 16 9 C 0.01 0.13 3.17 -27.88 -0.09 0.04 16 10 C -0.03 -0.56 1.76 -90.62 -0.16 -0.72 16 11 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 12 C -0.14 -2.44 4.61 -90.62 -0.42 -2.85 16 13 C -0.17 -3.28 8.58 -26.74 -0.23 -3.51 16 14 C -0.20 -3.32 9.37 -26.74 -0.25 -3.57 16 15 C -0.12 -1.97 2.26 -90.63 -0.20 -2.17 16 16 H 0.10 1.72 7.14 -51.93 -0.37 1.35 16 17 C -0.13 -1.56 6.53 -25.10 -0.16 -1.72 16 18 C 0.11 1.15 7.78 -3.12 -0.02 1.13 16 19 N -0.74 -10.57 6.25 -59.12 -0.37 -10.94 16 20 C 0.52 10.01 7.28 -10.71 -0.08 9.94 16 21 O -0.52 -12.47 16.53 5.55 0.09 -12.38 16 22 H 0.27 8.76 7.19 -40.82 -0.29 8.47 16 23 H 0.03 0.75 5.82 -51.93 -0.30 0.45 16 24 H 0.01 0.19 6.68 -51.93 -0.35 -0.15 16 25 H 0.08 1.33 7.77 -51.93 -0.40 0.93 16 26 H 0.14 3.44 4.62 -51.93 -0.24 3.20 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.53 7.09 -51.93 -0.37 1.17 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.02 6.72 -51.93 -0.35 0.67 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.40 4.97 8.96 -40.82 -0.37 4.60 16 LS Contribution 268.70 15.07 4.05 4.05 Total: -1.00 -33.30 268.70 -7.23 -40.53 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.75 Total: 5.87 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.93 Total: -19.72 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.39 Total: -38.95 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.30 -7.23 -40.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624822.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.908 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds