Wall clock time and date at job start Mon Mar 30 2020 03:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99850 * 2 1 4 4 H 1.48506 * 109.46906 * 239.99813 * 3 2 1 5 5 H 1.48504 * 109.47075 * 120.00190 * 3 2 1 6 6 H 1.48499 * 109.47204 * 359.97438 * 3 2 1 7 7 C 1.37882 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47167 * 185.10287 * 9 7 2 11 11 H 1.09000 * 109.47123 * 53.72213 * 10 9 7 12 12 C 1.53001 * 109.47061 * 293.72010 * 10 9 7 13 13 C 1.53001 * 117.49806 * 4.60557 * 12 10 9 14 14 C 1.52991 * 60.00150 * 252.51280 * 13 12 10 15 15 C 1.53001 * 109.46973 * 173.72329 * 10 9 7 16 16 H 1.08994 * 110.43630 * 59.29479 * 15 10 9 17 17 C 1.54629 * 110.48508 * 181.84261 * 15 10 9 18 18 C 1.54473 * 101.76885 * 93.87862 * 17 15 10 19 19 N 1.46768 * 105.47561 * 25.41278 * 18 17 15 20 20 C 1.34743 * 111.34740 * 343.02115 * 19 18 17 21 21 O 1.21288 * 125.12098 * 180.36627 * 20 19 18 22 22 H 0.97007 * 119.99678 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47014 * 305.10102 * 9 7 2 24 24 H 1.08996 * 109.47011 * 65.09762 * 9 7 2 25 25 H 1.08995 * 115.54884 * 150.31397 * 12 10 9 26 26 H 1.09001 * 117.49978 * 0.02562 * 13 12 10 27 27 H 1.09000 * 117.49560 * 145.01612 * 13 12 10 28 28 H 1.08998 * 117.49820 * 252.51402 * 14 13 12 29 29 H 1.09002 * 117.50050 * 107.49325 * 14 13 12 30 30 H 1.09000 * 110.96636 * 211.99632 * 17 15 10 31 31 H 1.09003 * 110.96855 * 335.75686 * 17 15 10 32 32 H 1.09001 * 110.24731 * 144.41486 * 18 17 15 33 33 H 1.08999 * 110.24403 * 266.33169 * 18 17 15 34 34 H 0.96994 * 124.34988 * 162.97902 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2841 2.7465 -0.0006 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2404 -3.6592 0.1295 11 1 2.8727 -3.5021 1.0034 12 6 3.1128 -3.7274 -1.1256 13 6 2.9328 -2.6255 -2.1717 14 6 2.4180 -4.0385 -2.4528 15 6 1.4698 -4.9715 0.2868 16 1 0.8223 -5.1382 -0.5740 17 6 2.4481 -6.1555 0.4655 18 6 2.5355 -6.2626 2.0040 19 7 1.2791 -5.6957 2.5080 20 6 0.6596 -4.9599 1.5644 21 8 -0.3916 -4.3739 1.7150 22 1 -0.4850 -0.8401 0.0004 23 1 0.5574 -2.5182 0.8410 24 1 0.6951 -2.5977 -0.9317 25 1 4.1177 -4.1231 -0.9787 26 1 2.1933 -1.8517 -1.9656 27 1 3.8196 -2.2959 -2.7131 28 1 2.9660 -4.6386 -3.1791 29 1 1.3394 -4.1946 -2.4318 30 1 2.0385 -7.0686 0.0336 31 1 3.4224 -5.9249 0.0346 32 1 2.6258 -7.3064 2.3050 33 1 3.3850 -5.6889 2.3744 34 1 0.9376 -5.8333 3.4054 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260624822.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:56 Heat of formation + Delta-G solvation = -48.807703 kcal Electronic energy + Delta-G solvation = -15973.906574 eV Core-core repulsion = 13484.843864 eV Total energy + Delta-G solvation = -2489.062710 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63910 -39.06186 -37.30726 -35.17386 -33.34473 -30.80639 -28.46217 -26.30021 -24.44413 -23.02070 -22.68777 -21.30932 -19.78654 -18.74414 -18.28441 -17.50423 -16.68905 -15.78356 -15.62020 -15.22440 -15.01550 -14.67862 -14.43634 -13.99829 -13.63157 -13.16931 -13.10122 -12.74171 -12.45142 -12.01622 -11.98386 -11.85480 -11.82398 -11.45544 -10.88163 -10.81263 -10.66054 -10.40919 -10.38505 -10.00003 -8.57946 -6.22860 1.50798 1.56409 1.60626 1.78201 2.47992 2.60623 3.12045 3.25577 3.46741 3.62983 4.00176 4.08619 4.18013 4.28656 4.35921 4.50261 4.66014 4.71504 4.78594 4.90953 4.95691 4.99909 5.13789 5.23210 5.27197 5.45535 5.52446 5.60286 5.81136 5.94688 6.03779 6.11996 6.30372 6.66143 7.29648 7.54970 8.81046 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028589 B = 0.009762 C = 0.008276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.163613 B = 2867.623713 C = 3382.602637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.051 4.051 3 Si 1.113 2.887 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.292 1.292 7 C -0.577 4.577 8 H 0.059 0.941 9 C 0.013 3.987 10 C -0.021 4.021 11 H 0.059 0.941 12 C -0.127 4.127 13 C -0.195 4.195 14 C -0.172 4.172 15 C -0.115 4.115 16 H 0.085 0.915 17 C -0.116 4.116 18 C 0.100 3.900 19 N -0.727 5.727 20 C 0.507 3.493 21 O -0.588 6.588 22 H 0.249 0.751 23 H -0.019 1.019 24 H -0.020 1.020 25 H 0.126 0.874 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.236 -15.136 0.173 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.246 4.246 3 Si 0.935 3.065 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.218 1.218 7 C -0.615 4.615 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.040 4.040 11 H 0.078 0.922 12 C -0.145 4.145 13 C -0.232 4.232 14 C -0.208 4.208 15 C -0.137 4.137 16 H 0.103 0.897 17 C -0.153 4.153 18 C -0.023 4.023 19 N -0.382 5.382 20 C 0.294 3.706 21 O -0.468 6.468 22 H 0.058 0.942 23 H 0.000 1.000 24 H -0.002 1.002 25 H 0.144 0.856 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 10.580 -13.214 0.141 16.928 hybrid contribution -0.862 -1.289 0.562 1.649 sum 9.717 -14.502 0.704 17.471 Atomic orbital electron populations 1.70889 1.08341 1.29465 1.49894 1.27366 0.96501 1.06937 0.93843 0.83005 0.74090 0.71317 0.78125 1.18759 1.19587 1.21772 1.22279 0.94541 0.92388 1.52337 0.92274 1.19293 0.94612 0.94767 0.93687 1.20311 0.95179 0.91300 0.97198 0.92231 1.22060 0.99577 1.04070 0.88763 1.23383 1.03889 0.93235 1.02676 1.22903 0.99413 0.99273 0.99241 1.22033 0.98200 0.98349 0.95129 0.89681 1.22734 1.00650 0.96472 0.95454 1.22362 0.84851 1.00830 0.94267 1.46333 1.24844 1.51829 1.15225 1.21572 0.84113 0.76538 0.88343 1.90714 1.25629 1.46368 1.84072 0.94187 1.00044 1.00209 0.85576 0.89077 0.88786 0.86439 0.91495 0.88150 0.86962 0.86599 0.90243 0.74870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.25 13.65 21.45 0.29 -62.95 16 2 C -0.05 -3.06 5.46 84.66 0.46 -2.59 16 3 Si 1.11 52.30 29.90 68.60 2.05 54.35 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 7 C -0.58 -33.03 6.17 25.60 0.16 -32.87 16 8 H 0.06 3.22 7.23 -2.91 -0.02 3.20 16 9 C 0.01 0.73 3.17 29.85 0.09 0.82 16 10 C -0.02 -0.83 1.76 -10.79 -0.02 -0.85 16 11 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 12 C -0.13 -4.18 4.61 -10.79 -0.05 -4.23 16 13 C -0.20 -7.47 8.58 30.59 0.26 -7.21 16 14 C -0.17 -5.38 9.37 30.59 0.29 -5.09 16 15 C -0.12 -3.85 2.26 -10.80 -0.02 -3.87 16 16 H 0.08 3.03 7.14 -2.39 -0.02 3.01 16 17 C -0.12 -2.25 6.53 31.65 0.21 -2.04 16 18 C 0.10 1.73 7.78 86.83 0.68 2.40 16 19 N -0.73 -19.46 6.25 -459.36 -2.87 -22.33 16 20 C 0.51 19.72 7.28 87.85 0.64 20.36 16 21 O -0.59 -30.27 16.53 -3.05 -0.05 -30.32 16 22 H 0.25 17.39 7.19 -92.70 -0.67 16.72 16 23 H -0.02 -1.19 5.82 -2.39 -0.01 -1.21 16 24 H -0.02 -1.20 6.68 -2.39 -0.02 -1.22 16 25 H 0.13 3.22 7.77 -2.39 -0.02 3.20 16 26 H 0.09 4.52 4.62 -2.39 -0.01 4.51 16 27 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.07 2.36 7.09 -2.39 -0.02 2.35 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.11 1.79 6.72 -2.39 -0.02 1.78 16 32 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.41 9.58 8.96 -92.71 -0.83 8.75 16 Total: -1.00 -80.52 268.70 2.49 -78.02 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.38 Total: 18.39 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 2.69 Total: -35.16 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -2.58 Total: -85.29 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.05 Total: -30.32 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.05 Total: 54.35 kcal Total: -80.52 2.49 -78.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624822.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.216 kcal (2) G-P(sol) polarization free energy of solvation -80.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds