Wall clock time and date at job start Mon Mar 30 2020 03:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00023 * 2 1 4 4 H 1.48503 * 109.46738 * 269.99842 * 3 2 1 5 5 H 1.48502 * 109.47261 * 29.99294 * 3 2 1 6 6 H 1.48495 * 109.47193 * 149.99762 * 3 2 1 7 7 C 1.37875 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99828 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00179 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47030 * 184.10074 * 9 7 2 11 11 H 1.08996 * 109.47579 * 307.20418 * 10 9 7 12 12 C 1.53006 * 109.46985 * 67.20818 * 10 9 7 13 13 C 1.52991 * 117.49850 * 65.05533 * 12 10 9 14 14 C 1.52999 * 60.03120 * 252.47456 * 13 12 10 15 15 C 1.53010 * 109.47046 * 187.20435 * 10 9 7 16 16 H 1.08996 * 110.43101 * 302.54647 * 15 10 9 17 17 C 1.54625 * 110.48326 * 180.02562 * 15 10 9 18 18 C 1.54481 * 101.76155 * 216.52417 * 17 15 10 19 19 N 1.46757 * 105.47381 * 25.42077 * 18 17 15 20 20 C 1.34418 * 111.30122 * 342.98229 * 19 18 17 21 21 O 1.21284 * 124.94171 * 180.40935 * 20 19 18 22 22 H 0.96999 * 120.00085 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46547 * 64.10291 * 9 7 2 24 24 H 1.08998 * 109.46889 * 304.10766 * 9 7 2 25 25 H 1.09000 * 115.54893 * 210.72784 * 12 10 9 26 26 H 1.09004 * 117.50214 * 359.97167 * 13 12 10 27 27 H 1.08999 * 117.50052 * 144.97581 * 13 12 10 28 28 H 1.09004 * 117.49551 * 107.50573 * 14 13 12 29 29 H 1.08998 * 117.49754 * 252.52219 * 14 13 12 30 30 H 1.08994 * 110.97721 * 334.64445 * 17 15 10 31 31 H 1.09003 * 110.96772 * 98.40602 * 17 15 10 32 32 H 1.09000 * 110.24214 * 144.42040 * 18 17 15 33 33 H 1.08998 * 110.24559 * 266.32814 * 18 17 15 34 34 H 0.97001 * 124.34794 * 162.96362 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6328 -0.1015 11 1 3.5566 -3.2395 0.6755 12 6 3.6652 -3.2034 -1.4758 13 6 4.3209 -2.5603 -2.6993 14 6 2.8366 -2.3228 -2.4143 15 6 5.5408 -2.6495 0.0793 16 1 6.0194 -2.0109 -0.6632 17 6 6.0818 -4.0946 -0.0210 18 6 7.2146 -4.0803 1.0292 19 7 6.8466 -3.0318 1.9879 20 6 5.9123 -2.2106 1.4785 21 8 5.4364 -1.2565 2.0566 22 1 -0.4850 0.8400 -0.0004 23 1 3.8744 -0.7450 0.9257 24 1 3.8752 -0.6180 -0.8498 25 1 3.4874 -4.2784 -1.5067 26 1 5.0058 -1.7303 -2.5254 27 1 4.5748 -3.2121 -3.5352 28 1 2.5450 -1.3366 -2.0529 29 1 2.1140 -2.8187 -3.0624 30 1 5.3120 -4.8188 0.2453 31 1 6.4760 -4.2953 -1.0173 32 1 7.2756 -5.0459 1.5313 33 1 8.1663 -3.8420 0.5543 34 1 7.2283 -2.9431 2.8752 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624825.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:59 Heat of formation + Delta-G solvation = -14.767619 kcal Electronic energy + Delta-G solvation = -15955.675074 eV Core-core repulsion = 13468.088452 eV Total energy + Delta-G solvation = -2487.586622 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.26836 -37.45538 -35.97034 -32.73841 -31.99832 -29.61354 -27.48981 -24.76482 -22.42891 -21.51783 -21.04930 -19.84385 -18.10922 -17.06347 -16.59020 -16.36331 -15.10635 -14.42550 -14.16118 -13.64351 -13.44672 -13.02457 -12.92529 -12.45808 -12.22506 -11.76376 -11.60921 -11.19517 -10.86085 -10.54702 -10.43832 -10.14791 -9.80019 -9.53149 -9.34631 -9.21694 -8.96145 -8.90683 -8.72403 -8.31514 -5.89912 -3.81680 3.00546 3.41874 3.50641 3.57023 3.63550 4.60026 4.61228 4.65231 4.74085 4.97061 5.27383 5.42966 5.47564 5.57334 5.66467 5.78830 5.81425 5.92739 6.08555 6.16937 6.26445 6.32592 6.62746 6.77791 6.84309 7.02404 7.10047 7.18126 7.41815 7.56705 7.78185 7.98436 8.63896 8.70112 9.17157 9.73465 11.23347 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028573 B = 0.010585 C = 0.008614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.726094 B = 2644.571395 C = 3249.850567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.867 3.133 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.072 0.928 9 C -0.029 4.029 10 C -0.025 4.025 11 H 0.067 0.933 12 C -0.134 4.134 13 C -0.201 4.201 14 C -0.160 4.160 15 C -0.116 4.116 16 H 0.102 0.898 17 C -0.126 4.126 18 C 0.103 3.897 19 N -0.744 5.744 20 C 0.518 3.482 21 O -0.510 6.510 22 H 0.260 0.740 23 H 0.051 0.949 24 H 0.009 0.991 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.138 0.862 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.716 -9.171 -1.815 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.136 4.136 3 Si 0.694 3.306 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.535 4.535 8 H 0.090 0.910 9 C -0.066 4.066 10 C -0.044 4.044 11 H 0.085 0.915 12 C -0.153 4.153 13 C -0.238 4.238 14 C -0.196 4.196 15 C -0.137 4.137 16 H 0.120 0.880 17 C -0.164 4.164 18 C -0.022 4.022 19 N -0.401 5.401 20 C 0.305 3.695 21 O -0.384 6.384 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.027 0.973 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.155 0.845 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 14.252 -8.541 -1.624 16.694 hybrid contribution 0.610 0.765 0.312 1.026 sum 14.861 -7.777 -1.311 16.824 Atomic orbital electron populations 1.69913 1.06186 1.26537 1.52088 1.24945 0.94613 0.98796 0.95208 0.86946 0.81150 0.84139 0.78335 1.20554 1.21671 1.18342 1.21056 0.89360 0.94165 1.48884 0.90979 1.20011 0.97170 0.91217 0.98206 1.20452 0.88838 1.00230 0.94851 0.91456 1.22019 1.05569 0.96891 0.90793 1.22914 0.98280 1.03345 0.99272 1.23485 0.91009 1.04801 1.00326 1.22083 1.00273 0.96669 0.94717 0.87996 1.22652 0.97429 0.97206 0.99114 1.22013 0.98221 0.91049 0.90950 1.46291 1.43580 1.31966 1.18263 1.21065 0.77967 0.81696 0.88815 1.90755 1.54101 1.27674 1.65889 0.93031 0.93111 0.97316 0.89626 0.89766 0.90511 0.84460 0.90754 0.89978 0.89520 0.90913 0.91687 0.75887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.87 22.81 27.39 -169.99 -4.66 18.16 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.26 -6.89 6.66 56.52 0.38 -6.51 16 7 C -0.50 -14.09 6.63 -34.44 -0.23 -14.31 16 8 H 0.07 2.20 7.97 -52.48 -0.42 1.78 16 9 C -0.03 -0.71 2.91 -27.88 -0.08 -0.79 16 10 C -0.02 -0.49 1.63 -90.61 -0.15 -0.63 16 11 H 0.07 1.41 8.13 -51.93 -0.42 0.98 16 12 C -0.13 -2.39 5.10 -90.59 -0.46 -2.85 16 13 C -0.20 -3.26 9.38 -26.74 -0.25 -3.51 16 14 C -0.16 -3.17 8.80 -26.70 -0.24 -3.41 16 15 C -0.12 -1.84 2.22 -90.63 -0.20 -2.04 16 16 H 0.10 1.59 7.15 -51.93 -0.37 1.22 16 17 C -0.13 -1.40 6.04 -25.10 -0.15 -1.56 16 18 C 0.10 0.96 7.78 -3.13 -0.02 0.93 16 19 N -0.74 -9.43 6.24 -59.21 -0.37 -9.80 16 20 C 0.52 9.15 7.83 -10.86 -0.09 9.07 16 21 O -0.51 -11.62 15.30 5.55 0.08 -11.53 16 22 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 23 H 0.05 1.37 4.69 -51.93 -0.24 1.13 16 24 H 0.01 0.21 5.83 -51.93 -0.30 -0.09 16 25 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.08 1.38 7.11 -51.93 -0.37 1.01 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.14 3.28 4.70 -51.93 -0.24 3.03 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.40 4.37 8.96 -40.82 -0.37 4.01 16 LS Contribution 267.19 15.07 4.03 4.03 Total: -1.00 -33.53 267.19 -6.95 -40.48 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.84 Total: 3.62 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.96 Total: -17.30 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.40 Total: -37.46 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.66 Total: 18.16 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.53 -6.95 -40.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624825.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.713 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds