Wall clock time and date at job start Mon Mar 30 2020 03:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00023 * 2 1 4 4 H 1.48503 * 109.46738 * 269.99842 * 3 2 1 5 5 H 1.48502 * 109.47261 * 29.99294 * 3 2 1 6 6 H 1.48495 * 109.47193 * 149.99762 * 3 2 1 7 7 C 1.37875 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99828 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00179 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47030 * 184.10074 * 9 7 2 11 11 H 1.08996 * 109.47579 * 307.20418 * 10 9 7 12 12 C 1.53006 * 109.46985 * 67.20818 * 10 9 7 13 13 C 1.52991 * 117.49850 * 65.05533 * 12 10 9 14 14 C 1.52999 * 60.03120 * 252.47456 * 13 12 10 15 15 C 1.53010 * 109.47046 * 187.20435 * 10 9 7 16 16 H 1.08996 * 110.43101 * 302.54647 * 15 10 9 17 17 C 1.54625 * 110.48326 * 180.02562 * 15 10 9 18 18 C 1.54481 * 101.76155 * 216.52417 * 17 15 10 19 19 N 1.46757 * 105.47381 * 25.42077 * 18 17 15 20 20 C 1.34418 * 111.30122 * 342.98229 * 19 18 17 21 21 O 1.21284 * 124.94171 * 180.40935 * 20 19 18 22 22 H 0.96999 * 120.00085 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46547 * 64.10291 * 9 7 2 24 24 H 1.08998 * 109.46889 * 304.10766 * 9 7 2 25 25 H 1.09000 * 115.54893 * 210.72784 * 12 10 9 26 26 H 1.09004 * 117.50214 * 359.97167 * 13 12 10 27 27 H 1.08999 * 117.50052 * 144.97581 * 13 12 10 28 28 H 1.09004 * 117.49551 * 107.50573 * 14 13 12 29 29 H 1.08998 * 117.49754 * 252.52219 * 14 13 12 30 30 H 1.08994 * 110.97721 * 334.64445 * 17 15 10 31 31 H 1.09003 * 110.96772 * 98.40602 * 17 15 10 32 32 H 1.09000 * 110.24214 * 144.42040 * 18 17 15 33 33 H 1.08998 * 110.24559 * 266.32814 * 18 17 15 34 34 H 0.97001 * 124.34794 * 162.96362 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6328 -0.1015 11 1 3.5566 -3.2395 0.6755 12 6 3.6652 -3.2034 -1.4758 13 6 4.3209 -2.5603 -2.6993 14 6 2.8366 -2.3228 -2.4143 15 6 5.5408 -2.6495 0.0793 16 1 6.0194 -2.0109 -0.6632 17 6 6.0818 -4.0946 -0.0210 18 6 7.2146 -4.0803 1.0292 19 7 6.8466 -3.0318 1.9879 20 6 5.9123 -2.2106 1.4785 21 8 5.4364 -1.2565 2.0566 22 1 -0.4850 0.8400 -0.0004 23 1 3.8744 -0.7450 0.9257 24 1 3.8752 -0.6180 -0.8498 25 1 3.4874 -4.2784 -1.5067 26 1 5.0058 -1.7303 -2.5254 27 1 4.5748 -3.2121 -3.5352 28 1 2.5450 -1.3366 -2.0529 29 1 2.1140 -2.8187 -3.0624 30 1 5.3120 -4.8188 0.2453 31 1 6.4760 -4.2953 -1.0173 32 1 7.2756 -5.0459 1.5313 33 1 8.1663 -3.8420 0.5543 34 1 7.2283 -2.9431 2.8752 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260624825.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:59 Heat of formation + Delta-G solvation = -39.384021 kcal Electronic energy + Delta-G solvation = -15956.742521 eV Core-core repulsion = 13468.088452 eV Total energy + Delta-G solvation = -2488.654069 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.52947 -38.95271 -37.24025 -34.81800 -33.50383 -31.20656 -28.85337 -26.32294 -23.99167 -22.96240 -22.36981 -21.15625 -19.61221 -18.76899 -18.17407 -17.81233 -16.37086 -16.29096 -15.67125 -15.14559 -14.68992 -14.58378 -14.39221 -14.01475 -13.62329 -13.43382 -13.01347 -12.78992 -12.40981 -12.07343 -12.02550 -11.83940 -11.64090 -11.28702 -11.25633 -10.86283 -10.65041 -10.43038 -10.31680 -9.94463 -8.22563 -6.15724 1.28339 1.33325 1.49221 1.67300 2.38807 2.55242 3.12507 3.21471 3.54973 3.75256 3.98621 4.17045 4.26980 4.37943 4.42070 4.54503 4.73406 4.80496 4.86738 4.99974 5.04357 5.05239 5.21922 5.31373 5.35403 5.51092 5.60597 5.69753 5.79018 5.86852 6.03874 6.15757 6.39509 6.85702 7.40161 7.41773 8.94283 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028573 B = 0.010585 C = 0.008614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.726094 B = 2644.571395 C = 3249.850567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.006 3.994 3 Si 0.928 3.072 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.483 4.483 8 H 0.038 0.962 9 C -0.022 4.022 10 C -0.022 4.022 11 H 0.045 0.955 12 C -0.131 4.131 13 C -0.160 4.160 14 C -0.199 4.199 15 C -0.114 4.114 16 H 0.109 0.891 17 C -0.117 4.117 18 C 0.101 3.899 19 N -0.728 5.728 20 C 0.503 3.497 21 O -0.577 6.577 22 H 0.261 0.739 23 H 0.027 0.973 24 H 0.010 0.990 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.964 -10.968 -3.063 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.189 4.189 3 Si 0.753 3.247 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.521 4.521 8 H 0.056 0.944 9 C -0.059 4.059 10 C -0.041 4.041 11 H 0.064 0.936 12 C -0.149 4.149 13 C -0.197 4.197 14 C -0.236 4.236 15 C -0.136 4.136 16 H 0.127 0.873 17 C -0.154 4.154 18 C -0.022 4.022 19 N -0.383 5.383 20 C 0.290 3.710 21 O -0.457 6.457 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.028 0.972 25 H 0.130 0.870 26 H 0.103 0.897 27 H 0.134 0.866 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 17.554 -10.394 -2.882 20.603 hybrid contribution -0.401 1.224 0.723 1.477 sum 17.154 -9.170 -2.159 19.571 Atomic orbital electron populations 1.70042 1.07697 1.27350 1.54392 1.25708 0.95334 1.02275 0.95607 0.85979 0.79368 0.80305 0.79032 1.18723 1.21370 1.18996 1.21264 0.91489 0.92593 1.46797 0.94403 1.19874 0.94295 0.94914 0.96857 1.20278 0.91813 0.96333 0.95660 0.93608 1.22035 1.05123 0.97765 0.89967 1.22972 0.94798 1.02954 0.98972 1.23259 0.94169 1.03244 1.02912 1.22011 0.97186 1.00479 0.93903 0.87328 1.22714 0.97868 0.93217 1.01620 1.22357 0.98538 0.91290 0.90012 1.46299 1.41577 1.31336 1.19108 1.21504 0.78442 0.81415 0.89599 1.90714 1.56769 1.30710 1.67498 0.92999 0.95466 0.97173 0.87046 0.89678 0.86647 0.89066 0.90270 0.89943 0.86320 0.87759 0.88781 0.74833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.17 13.96 21.45 0.30 -61.87 16 2 C 0.01 0.38 5.47 84.65 0.46 0.85 16 3 Si 0.93 48.77 27.39 68.60 1.88 50.65 16 4 H -0.26 -12.93 7.11 99.48 0.71 -12.23 16 5 H -0.29 -14.87 7.11 99.48 0.71 -14.17 16 6 H -0.27 -14.14 6.66 99.48 0.66 -13.48 16 7 C -0.48 -28.69 6.63 25.60 0.17 -28.52 16 8 H 0.04 2.44 7.97 -2.91 -0.02 2.42 16 9 C -0.02 -1.12 2.91 29.85 0.09 -1.03 16 10 C -0.02 -0.85 1.63 -10.79 -0.02 -0.86 16 11 H 0.05 1.95 8.13 -2.39 -0.02 1.93 16 12 C -0.13 -4.40 5.10 -10.77 -0.05 -4.45 16 13 C -0.16 -4.64 9.38 30.59 0.29 -4.35 16 14 C -0.20 -7.84 8.80 30.62 0.27 -7.57 16 15 C -0.11 -3.37 2.22 -10.80 -0.02 -3.40 16 16 H 0.11 3.06 7.15 -2.39 -0.02 3.04 16 17 C -0.12 -2.04 6.04 31.65 0.19 -1.85 16 18 C 0.10 1.36 7.78 86.83 0.68 2.04 16 19 N -0.73 -16.46 6.24 -459.82 -2.87 -19.33 16 20 C 0.50 17.34 7.83 87.90 0.69 18.03 16 21 O -0.58 -27.02 15.30 -3.04 -0.05 -27.07 16 22 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 23 H 0.03 1.53 4.69 -2.39 -0.01 1.52 16 24 H 0.01 0.50 5.83 -2.39 -0.01 0.49 16 25 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 26 H 0.08 2.48 7.11 -2.38 -0.02 2.46 16 27 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.09 4.50 4.70 -2.39 -0.01 4.49 16 29 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.08 1.48 7.91 -2.39 -0.02 1.46 16 31 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.41 7.96 8.96 -92.71 -0.83 7.13 16 Total: -1.00 -78.85 267.19 2.22 -76.63 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.23 Total: 12.11 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 2.73 Total: -31.13 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -2.57 Total: -81.20 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 1.88 Total: 50.65 kcal Total: -78.85 2.22 -76.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624825.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.245 kcal (2) G-P(sol) polarization free energy of solvation -78.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds